ID   JN054635; SV 1; linear; genomic RNA; STD; VRL; 2219 BP.
XX
AC   JN054635;
XX
DT   02-NOV-2011 (Rel. 110, Created)
DT   02-NOV-2011 (Rel. 110, Last updated, Version 1)
XX
DE   Cucumber mosaic virus strain CLW2 movement protein and coat protein genes,
DE   complete cds.
XX
KW   .
XX
OS   Cucumber mosaic virus (cucumber mosaic cucumovirus)
OC   Viruses; Riboviria; Bromoviridae; Cucumovirus.
XX
RN   [1]
RP   1-2219
RA   Lee W.W., Roff M., Othman R.Y.;
RT   "Genomic analysis of Cucumber mosaic virus strain CLW2 from Malaysia
RT   suggests a subgroup IB virus with a unique deletion in the
RT   methyltransferase domain of the 1a replicase protein that does not affect
RT   replication";
RL   Unpublished.
XX
RN   [2]
RP   1-2219
RA   Lee W.W., Roff M., Othman R.Y.;
RT   ;
RL   Submitted (03-JUN-2011) to the INSDC.
RL   Centre for Research in Biological for Agriculture (CEBAR), University of
RL   Malaya, Level 5, Block B, Institute of Postgraduate Studies Building, Kuala
RL   Lumpur, Kuala Lumpur 50603, Malaysia
XX
DR   MD5; bae309301ecfc99c8d16e26b6473e88c.
DR   EuropePMC; PMC3889230; 24426321.
DR   EuropePMC; PMC4188193; 25674612.
DR   RFAM; RF01084; TLS-PK3.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2219
FT                   /organism="Cucumber mosaic virus"
FT                   /host="cucumber"
FT                   /strain="CLW2"
FT                   /mol_type="genomic RNA"
FT                   /country="Malaysia"
FT                   /note="acronym: CMV"
FT                   /db_xref="taxon:12305"
FT   CDS             121..960
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /note="3a"
FT                   /db_xref="InterPro:IPR000603"
FT                   /db_xref="UniProtKB/TrEMBL:G8FVJ4"
FT                   /protein_id="AER35118.1"
FT                   /translation="MAFQGTSRTLTQQSSAATSDDLQKILFSPEAIKKMATECDLGRHH
FT                   WMRADNAISVRPLVPEVTHGRIASFFKSGYDVGELCSKGYMSVPQVLCAVTRTVSTDAE
FT                   GSLRIYLADLGDKELSPIDGQCVSLHNHDLPALVSFQPTYDCPMESVGNRKRCFAVVIE
FT                   RHGYIGYTGTTASVCSNWQARFSSKNNNYTHIAAGKTLVLPFNRLAEQTKPSAIARLLK
FT                   SQLNNIESSQYVLTDSKINQNARSESEDLNVESPPVAIGSSSASRSETFRPQVVNGL"
FT   CDS             1261..1917
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="3b"
FT                   /db_xref="GOA:G8FVJ5"
FT                   /db_xref="InterPro:IPR000247"
FT                   /db_xref="InterPro:IPR023800"
FT                   /db_xref="InterPro:IPR037137"
FT                   /db_xref="UniProtKB/TrEMBL:G8FVJ5"
FT                   /protein_id="AER35119.1"
FT                   /translation="MDKSESTSAGRNRRRRPRRGSRSASSSADATFRVLSQQLSRLNKT
FT                   LAAGRPTINHPTFVGSDRCKPGYTFTSITLKPPKIDKGSYYGKRLLLPDSVTEFDKKLV
FT                   SRIQIRVNPLPKFDSTVWVTVRKVPASSDLSVSAISAMFADGASPVLVYQYAASGVQAN
FT                   NKLLYDLSVVRADIGDMRKYAVLVYSKDDALETDELVLHVDIEHQRIPTSGVLPV"
XX
SQ   Sequence 2219 BP; 506 A; 518 C; 536 G; 659 T; 0 other;
     gtaatcttac cactgtgtgt gtgcgtgtgt gtgtgtcgcg tcgtgtcgag tcgtgttgtc        60
     cgcacatttg agtcgtgctg tccgcacatt ctttatttca gtgtgttaga ttcccgaggc       120
     atggctttcc aaggtaccag taggacttta actcaacagt cctcagcggc tacgtctgac       180
     gatcttcaga agatattatt tagccctgaa gccattaaga aaatggctac tgagtgtgac       240
     ctaggccggc atcattggat gcgtgctgat aatgcgatat cagtccggcc cctcgttccc       300
     gaagtaaccc atggtcgtat tgcttctttc tttaagtctg gatatgatgt cggtgaattg       360
     tgctctaaag gatatatgag cgttcctcaa gtgttgtgtg ctgttactcg aacagtttcc       420
     accgatgctg agggatcttt gagaatttac ctggctgatc taggcgacaa ggagttgtct       480
     cctatagatg ggcaatgcgt ttcattacat aaccatgatc tccccgcttt agtgtctttc       540
     caaccgacgt atgactgtcc catggaaagt gttgggaacc gtaagcggtg ttttgctgtc       600
     gttatcgaga gacatggtta tattgggtat accggcacca cagcaagcgt gtgtagtaat       660
     tggcaagcac gattttcttc taagaataac aactacactc atatcgctgc tgggaagact       720
     ctagtactgc cattcaacag attagctgag caaacgaaac cgtcagccat tgctcgtctg       780
     ttgaagtcgc aattgaataa catagaatct tcgcaatacg ttttaacgga ttcgaagatt       840
     aatcaaaatg cgcgcagtga gtccgaggat ttgaatgttg aaagccctcc cgtcgcaatc       900
     gggagttctt ccgcgtcccg ctccgaaacc tttagaccgc aggtggttaa cggtctttag       960
     tgttttcgtt gcgtattaga ttatatgtat gtgtgagtct atacataata ctatacctat      1020
     agtgtcctgt gtgagttgat acagtagaca actgtgacgc gatgctgtgt tgagaagaaa      1080
     gcacatctgg tctagtaaaa cccacatcat tagctttgag gttcaattcc tcttgctccc      1140
     tgatgggctc cctttacttt tcatggatgc ttctccacga gattgcgttt cgtctactta      1200
     tcataagagt attgtgctgt gattttctct tttgtgttgt agattgagtc gagtcgagtc      1260
     atggacaaat ctgaatcaac cagtgccggt cgtaatcgtc gacgtcgtcc gcgtcgcggt      1320
     tcccgctccg cttcctcctc cgcggatgct acatttagag tcctgtcgca acagctttcg      1380
     cgacttaata agacgttagc agctggtcgt cctactatta accacccaac ctttgtgggt      1440
     agtgatcgtt gtaaacctgg gtacacgttc acctcgatta ccctgaagcc accgaaaata      1500
     gacaaaggtt cttattatgg caaaaggttg ttacttcctg attcagtcac tgagttcgat      1560
     aagaagcttg tttcgcgcat tcaaattcga gttaatcctt tgccgaaatt tgattctacc      1620
     gtgtgggtga cggtccgtaa agttcctgcc tcctcggacc tgtccgtttc cgccatctct      1680
     gctatgttcg cggacggagc ctcaccggta ctggtttatc agtacgctgc atctggcgtt      1740
     caagccaaca acaaattgtt gtatgatctt tcagtggtgc gcgctgatat tggtgacatg      1800
     agaaagtacg ccgtgctcgt gtattcaaaa gacgatgcgc tcgagacgga tgagctagta      1860
     cttcatgttg acatcgagca ccaacgcatt cccacgtctg gggtgctccc agtttgaact      1920
     cgtgttttcc aggatcctcc ctccgttttc tgtggcggga gctgagttgg tagtgttgct      1980
     ataaactacc tgaagtcact aaacgcttcg cggtgaacgg gttgtccatc cagctaacgg      2040
     ctaaaatggt cagtcgtgga gaaatccacg ccagtagact tacaagtctc tgaggtgcct      2100
     ttgaaaccat ctcctaggtt tcttcggaag gacttcggtc cgtgtacttc cagcacaaga      2160
     tgctggtatt agggtacggg catcccccca ctttagtggg ggtctctcaa aggagacca       2219
//