Dbfetch
ID JN053450; SV 1; circular; genomic DNA; STD; VRL; 2799 BP. XX AC JN053450; XX DT 14-SEP-2011 (Rel. 110, Created) DT 14-SEP-2011 (Rel. 110, Last updated, Version 1) XX DE East African cassava mosaic virus-Uganda2 Severe isolate B5J15 segment DE DNA-A, complete sequence. XX KW . XX OS East African cassava mosaic virus-Uganda2 Severe OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RC Publication Status: Online-Only RP 1-2799 RX PUBMED; 21812981. RA Ramkat R.C., Calari A., Maghuly F., Laimer M.; RT "Biotechnological approaches to determine the impact of viruses in the RT energy crop plant Jatropha curcas"; RL Virol J 8:386-386(2011). XX RN [2] RP 1-2799 RA Ramkat R.C., Calari A., Maghuly F., Laimer M.; RT ; RL Submitted (03-JUN-2011) to the INSDC. RL Plant Biotechnology, Institute of Applied Microbiology, Muthgasse, Wien RL A1190, Austria XX DR MD5; 16f58968a8c2c6a9a55dc257dacdaabe. DR EuropePMC; PMC3163225; 21812981. XX FH Key Location/Qualifiers FH FT source 1..2799 FT /organism="East African cassava mosaic virus-Uganda2 FT Severe" FT /segment="DNA-A" FT /host="Jatropha curcas" FT /isolate="B5J15" FT /mol_type="genomic DNA" FT /country="Kenya" FT /collected_by="Rose C. Ramkat" FT /collection_date="29-Aug-2009" FT /db_xref="taxon:223272" FT gene 172..528 FT /gene="AV2" FT CDS 172..528 FT /codon_start=1 FT /gene="AV2" FT /product="AV2" FT /db_xref="GOA:Q9ICG0" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q9ICG0" FT /protein_id="AEO18101.1" FT /translation="MWDPLVNDFPETVHGFRSMLAVKYLLHLEQEYDRGTVGAEYIRDL FT IGVLRCKNYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQAHVS FT ETQDVQNVSKPRCP" FT gene 332..1105 FT /gene="AV1" FT CDS 332..1105 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:G3K0L1" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:G3K0L1" FT /protein_id="AEO18102.1" FT /translation="MSKPPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKIWA FT NRPMYRKPKMYRMYRSPDVPKGCEGPCKVQSFEQRDDVKHLGICKVISDVTRGPGLTHR FT VGKRFCIKSIYILGKIWMDENIKKQNHNNNVMFYLLRDRRPYGNAPQDFGQIFNMFDNE FT PSTATIKNDLRDRFQVLRKFHATVVGGPSGMKEQALVKRFYKLNHHVTYNHQEAGKYEN FT HTENVLLLYMACTHASNPVYATLKIRIYFYDAVTN" FT gene complement(362..973) FT /gene="AC5" FT CDS complement(362..973) FT /codon_start=1 FT /gene="AC5" FT /product="AC5" FT /db_xref="InterPro:IPR006892" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:G3K0L2" FT /protein_id="AEO18103.1" FT /translation="MIICHVMIQLVKPFHQRLLLHARWTTNNSGMKFPQHLKPIPQIVL FT NCCSTGLIIKHVKYLPKVLGRIAIRPSIPKQVKHHIIIVILLLNIFIHPNLTKNVNGLD FT TKPLSDPVCQPRPTRHITNHLTDTKVLHIIPLLKRLDLTWAFTALRDIWASIHSVHLGF FT PIHGPVGPYFASGDADSGGNNTVRVWAVEVQPPPHLGYGC" FT gene complement(1102..1506) FT /gene="AC3" FT CDS complement(1102..1506) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:G3K0P8" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:G3K0P8" FT /protein_id="AEO18104.1" FT /translation="MDSRTGELITAPQARNGVFTWDITNPLYFEITDHDKRPGNMNHDI FT ITLQIRFNHNLRKALGIHKCFLNFKVWTTLRPQTGRFLRVFRYQVLKYLDMIGVISINT FT VLQAVDHVVYDVLLNTLQVTEQHAIKFNLY" FT gene complement(1247..1654) FT /gene="AC2" FT CDS complement(1247..1654) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /db_xref="GOA:G3K0S0" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:G3K0S0" FT /protein_id="AEO18105.1" FT /translation="MPPSSPSTSHCSQVPIKVQHRTAKTRAVRRRRVDLECGCSFYLHI FT DCINHGFSHRGTHHCASSKEWRFYLGHNKSPLFRNHRPRQEAREHEPRHHHTPDTVQPQ FT PSEGIGDSQVFSQLQGLDDLTASDWSFLKSI" FT gene complement(1563..2642) FT /gene="AC1" FT CDS complement(1563..2642) FT /codon_start=1 FT /gene="AC1" FT /product="replication-associated protein" FT /db_xref="GOA:G3K0L5" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:G3K0L5" FT /protein_id="AEO18106.1" FT /translation="MPRAGRFQINAKNYFITYPRCSLTKEEALSQLQALSFPTIIKFIR FT VCRELHQDGVPHLHVLIQFEGKFQCTNPRFFDLISPSRSTHFHPNIQGAKSCSDVKAYI FT EKGGEFLDPGLFQVDARSARGEGQHLAQVYAEALNASSKSEGVQVIKEKDPKSFFLQFH FT NITANADRIFQAPPQPYVSPFLSSSFTQVPEEIEVWVSENICGPAARPWRPISIVLEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLDEEKNQSLKAWALKNATFITLHEPL FT FSSAHQSPTPHSEDQGRQT" FT gene complement(2252..2485) FT /gene="AC4" FT CDS complement(2252..2485) FT /codon_start=1 FT /gene="AC4" FT /product="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:G3K0L6" FT /protein_id="AEO18107.1" FT /translation="MGCLISMFSSNSKASSNVPTRDSSISFPHPDQPISIQTFRELNHV FT PMSKLTLKREGNFWTLDFSKSMPEVQGGRASI" XX SQ Sequence 2799 BP; 733 A; 556 C; 729 G; 781 T; 0 other; accggatggc cgcgcccgaa aaagcaggtg gaccccacaa tgaccgcgcc cgcgaaagaa 60 agtggtccct gcgcacttgt tttggtcggc cagtcatatt cacgcgtgaa agtctagata 120 tttgttgttt gtctttatag acttcgtcgc gaagtagtag agcgcgtcaa catgtgggat 180 ccattggtga acgattttcc cgaaaccgtt cacggtttcc gttctatgct tgcggttaaa 240 tacctgttac atctggaaca ggaatacgat cgcggtactg tcggggctga gtatatacgg 300 gatctaatag gggttctacg gtgtaagaat tatgtcgaag ccaccaggag atataataat 360 ctcaacaccc gtatccaagg tgcggaggag gctgaacttc gacagcccat acacgaaccg 420 tgttgttgcc cccactgtcc gcgtcaccag aagcaaaata tgggccaaca ggcccatgta 480 tcggaaaccc aagatgtaca gaatgtatcg aagcccagat gtccctaagg gctgtgaagg 540 cccatgtaag gtccagtcgt ttgagcagag ggatgatgtg aagcaccttg gtatctgtaa 600 ggtgattagt gatgtgacgc gtgggcctgg gctgacacac agggtcggaa agaggttttg 660 tatcaagtcc atttacattc ttggtaagat ttggatggat gaaaatatta agaagcagaa 720 tcacaataat aatgtgatgt tttacctgct tagggataga aggccgtatg gcaatgcgcc 780 ccaagacttt gggcagatat ttaacatgtt tgataatgag cccagtactg caacaattaa 840 gaacgatttg agggataggt ttcaggtgtt gaggaaattt catgccactg ttgttggtgg 900 tccatcgggc atgaaggagc aggcgttggt gaaaaggttt tacaagctga atcatcacgt 960 gacatataat catcaggagg cagggaagta tgagaatcac acagagaatg tgttgttatt 1020 gtatatggca tgtacacatg cctcgaatcc tgtgtatgct acgctgaaaa tacgcatcta 1080 tttttatgat gcagtgacaa attaataaag gttgaatttt attgcatgtt gctccgtaac 1140 ttggagtgtg tttagtaata catcgtacac aacatgatca acagcttgaa ggacagtgtt 1200 aatggaaata acgcctatca tatctaaata cttgagcact tgatatctaa atactcttaa 1260 gaaacgacca gtctgaggcc gtaaggtcgt ccagaccttg aagttgagaa aacacttgtg 1320 aatccccaat gccttccgaa ggttgtggtt gaaccgtatc tggagtgtga tgatgtcgtg 1380 gttcatgttc cctggcctct tgtcgtggtc ggtgatttcg aaatagaggg gatttgttat 1440 gtcccaggta aaaacgccat tccttgcttg aggcgcagtg atgagttccc ctgtgcgaga 1500 atccatggtt gatgcagtcg atatggagat agaacgagca gccgcattca aggtctaccc 1560 gcctacgtct gacggccctg gtcttcgctg tgcggtgttg gactttgatg ggcacttgag 1620 aacaatggct cgtggagggt gatgaaggtg gcattcttta aagcccaggc tttaagggat 1680 tggttctttt cctcgtccag aaattcttta tatgatgatg ttggtcctgg attgcagagg 1740 aagatagtgg gaatgccgcc tttaatttga attggcttcc cgtattttgt attgctttgc 1800 cagtcccttt gggcccccat gaattccttg aagtgcttga gatagtgggg gtcgacgtca 1860 tcaatgacgt tgtaccaggc gtcgtttgaa tataccttgg gagacagatc caggtgtcca 1920 caaagataat tatggggtcc cagtgaacga gcccacattg ttttgccggt tcggctatca 1980 ccttctagaa caatactgat cggtctccat ggccgcgcag cgggaccgca tatattttca 2040 gatacccata cctctatttc ttctgggact tgtgtaaaag aggatgataa gaacggacta 2100 acgtaaggtt gtggcggagc ctggaagatt ctatctgcgt ttgcagttat gttatggaac 2160 tgtaaaaaaa aggactttgg atctttttct ttaataactt gaacaccctc ggatttagac 2220 gaagcattca acgcttcggc atatacctga gctaaatgct ggccctcccc ccttgcactt 2280 ctggcatcga cttggaaaag tccagggtcc agaaattccc ctcccttttc aatgtaagct 2340 ttgacatcgg aacatgattt agctccctga atgtttggat ggaaatgggt tgatcgggat 2400 ggggaaatga gatcgaagaa tctcgggttg gtacattgga acttgccttc gaattggatg 2460 agaacatgga gatgaggcac cccatcctga tgtagttctc tgcaaaccct aatgaatttg 2520 ataatcgtcg ggaacgaaag ggcttgtaat tgggaaaggg cctcttcttt tgttaatgag 2580 catcggggat aggttatgaa ataatttttg gcatttattt gaaaacgacc ggctcttggc 2640 atattggctg tcgttttgga tcgggggaca ctcaaaactc caggggaacg gtggaatggg 2700 gggcattata tatgatgtcc cccaatggca tatgtgtaaa taggtagact tccattcaaa 2760 atttgaattc cgaatattgg cggccatccg attaatatt 2799 //