ID JN053439; SV 1; circular; genomic DNA; STD; VRL; 2799 BP. XX AC JN053439; XX DT 14-SEP-2011 (Rel. 110, Created) DT 14-SEP-2011 (Rel. 110, Last updated, Version 1) XX DE East African cassava mosaic virus-Uganda2 Severe isolate B2J13 segment DE DNA-A, complete sequence. XX KW . XX OS East African cassava mosaic virus-Uganda2 Severe OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RC Publication Status: Online-Only RP 1-2799 RX PUBMED; 21812981. RA Ramkat R.C., Calari A., Maghuly F., Laimer M.; RT "Biotechnological approaches to determine the impact of viruses in the RT energy crop plant Jatropha curcas"; RL Virol J 8:386-386(2011). XX RN [2] RP 1-2799 RA Ramkat R.C., Calari A., Maghuly F., Laimer M.; RT ; RL Submitted (03-JUN-2011) to the INSDC. RL Plant Biotechnology, Institute of Applied Microbiology, Muthgasse, Wien RL A1190, Austria XX DR MD5; 1ef0f30b1f85591ddd3f1b49036ee706. XX FH Key Location/Qualifiers FH FT source 1..2799 FT /organism="East African cassava mosaic virus-Uganda2 FT Severe" FT /segment="DNA-A" FT /host="Jatropha curcas" FT /isolate="B2J13" FT /mol_type="genomic DNA" FT /country="Kenya" FT /collected_by="Rose C. Ramkat" FT /collection_date="29-Aug-2009" FT /db_xref="taxon:223272" FT gene 172..528 FT /gene="AV2" FT CDS 172..528 FT /codon_start=1 FT /gene="AV2" FT /product="AV2" FT /db_xref="GOA:G3K0D3" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:G3K0D3" FT /protein_id="AEO18024.1" FT /translation="MWDPLVNDFPETVHGFRSMLAVKYLLHLEEEYDRGTVGAEYIRDL FT IGVLRCKNYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQAHVS FT ETQDVQNVSKPRCP" FT gene 332..1105 FT /gene="AV1" FT CDS 332..1105 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:G3K0D4" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:G3K0D4" FT /protein_id="AEO18025.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKIWA FT NRPMYRKPKMYRMYRSPDVPKGCEGPCKVQSFEQRDDVKHLGICKVISDVTRGPGLTHR FT VGKRFCIKSIYILGKIWMDENIKKQNHTNNVIFYLLRDRRPYGNAPQDFGQIFNMFDNE FT PSTATIKNDLRDRFQVLRKFHATVVGGPSGMKEQALVKRFYKLNHHVTYNHQEAGKYEI FT HTENVLLLYMACTHASNPVYATLKIRIYFYDAVTN" FT gene complement(362..973) FT /gene="AC5" FT CDS complement(362..973) FT /codon_start=1 FT /gene="AC5" FT /product="AC5" FT /db_xref="InterPro:IPR006892" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:G3K0D5" FT /protein_id="AEO18026.1" FT /translation="MIICHVMIQLVKPFYQRLLLHARWTTNNSGMKFPQHLKPIPQIVL FT NCCSTGLIIKHVKYLPKVLGRIAIRPSIPKQVKNHIISVILLLNIFIHPDLTKNVNGLD FT TKPLSDPVCQPRPTRHITNHLTDTKVLHIIPLLKRLDLTWAFTALRDIWASIHSVHLGF FT PIHGPVGPYFASGDADSGGNNTVRVWAVEVQPPPHLGYGC" FT gene complement(1102..1506) FT /gene="AC3" FT CDS complement(1102..1506) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:G3K0D6" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:G3K0D6" FT /protein_id="AEO18027.1" FT /translation="MDSRTGELITAPQARNGVFTWDITNPLYFEITDHHKRPGNMTHDI FT ITLQIRFNHNLRKALGIHKCFLNFKVWTTLRPQTGRFLRVFRYQVLKYLDMIGVISINI FT VLQAVDHVVYDVLLNTLQVTEQHAIKFNLY" FT gene complement(1247..1654) FT /gene="AC2" FT CDS complement(1247..1654) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /db_xref="GOA:G3K0D7" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:G3K0D7" FT /protein_id="AEO18028.1" FT /translation="MPPSSPYTSHCSQVPIKVQHRTAKTRAVRRRRVDLECGCSFYLHI FT DCINHGFSHRGTHHCSSSKEWRFYLGHNKSPLFRNHRPPQEAREHDPRHHHTPDTVQPQ FT PSEGIGDSQVFSQLQGLDDLTASDWSFLKSI" FT gene complement(1563..2642) FT /gene="AC1" FT CDS complement(1563..2642) FT /codon_start=1 FT /gene="AC1" FT /product="replication-associated protein" FT /db_xref="GOA:G3K0D8" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:G3K0D8" FT /protein_id="AEO18029.1" FT /translation="MPRAGRFQINAKNYFITYPRCSLTKEEALSQLQALSFPTIIKFIR FT VCRELHQDGVPHLHVLIQFEGKFQCTNTRFFDFISPSRSTHFHPNIQGAKSWSDVKAYM FT EKGGESVDGGLFQVDARSARGEGQHLAQVYAEALNASTKSEALQIIKEKDPKSFFLQFH FT NITANADRIFQDPPQTYVSPFLSSSFTQVPEDIEVWVSENIGGPAARPWRTISTVLEGD FT SRTGKTIWASSIGPHNYLCGHLDQSPKVHSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLDEEKNQSLKGWALKNATFITLHEPL FT FSSAHQSPTPHSEDQGRQT" FT gene complement(2252..2485) FT /gene="AC4" FT CDS complement(2252..2485) FT /codon_start=1 FT /gene="AC4" FT /product="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:G3K0D9" FT /protein_id="AEO18030.1" FT /translation="MGCLISMFSSNSKASSNVPTRDSSISSPHPDQHISIRTFREPNHG FT PMSKLTWKRAGNLLTGDFSKSMPEVQGGRASI" XX SQ Sequence 2799 BP; 725 A; 560 C; 719 G; 795 T; 0 other; accggatggc cgcgcccgaa aaagcaggtg gaccccacaa tgaccgcgcc cgtgaaagaa 60 agtggtccct gcgcacttgt tttggtcggc cagtcatatt ctcgcttgaa agtctatata 120 tttgttgttt gtctttatat acttccacgc gaagtagtag agcgcgtcaa catgtgggat 180 ccattggtga acgattttcc cgaaaccgtt cacggtttcc gttctatgct tgcagttaaa 240 tacttgctac atctggagga ggaatacgat cgcggtactg tcggggctga gtatatacgg 300 gatctaatag gggttctacg gtgtaagaat tatgtcgaag cgaccaggag atataataat 360 ctcaacaccc gtatccaagg tgcggaggag gctgaacttc gacagcccat acacgaaccg 420 tgttgttgcc cccactgtcc gcgtcaccag aagcaaaata tgggccaaca ggcccatgta 480 tcggaaaccc aagatgtaca gaatgtatcg aagcccagat gtccctaagg gctgtgaagg 540 cccatgtaag gtccagtcgt ttgagcagag ggatgatgtg aagcaccttg gtatctgtaa 600 ggtgattagt gatgtgacgc gtgggcctgg gctgacacac agggtcggaa agaggttttg 660 tatcaagtcc atttacattc ttggtaagat ctggatggat gaaaatatta agaagcaaaa 720 tcacactaat aatgtgattt tttacctgct tagggataga aggccttatg gcaatgcgcc 780 ccaagacttt gggcagatat ttaacatgtt tgataatgag cccagtactg caacaattaa 840 gaacgatttg agggataggt ttcaggtgtt gaggaaattt catgccactg ttgttggtgg 900 tccatctggc atgaaggagc aggcgttggt aaaaaggttt tacaagctga atcatcacgt 960 gacatataat catcaggagg cagggaaata tgagattcac acagagaatg tgttgttatt 1020 gtatatggca tgtacacatg cctcgaatcc tgtgtatgct acgctgaaaa tacgcatcta 1080 tttttatgat gcagtgacaa attaataaag gttgaatttt attgcatgtt gctccgtaac 1140 ttggagtgtg tttagtaata catcgtacac aacatgatca acagcttgaa ggacaatgtt 1200 aatggaaata acgcctatca tatccaaata cttgagcact tgatatctaa atactcttaa 1260 gaaacgacca gtctgaggcc gtaaggtcgt ccagaccttg aagttgagaa aacacttgtg 1320 aatccccaat gccttccgaa ggttgtggtt gaaccgtatc tggagtgtga tgatgtcgtg 1380 ggtcatgttc cctggcctct tgtggtggtc ggtgatttcg aaatagaggg gatttgttat 1440 gtcccaggta aaaacgccat tccttgcttg aggagcagtg atgagttccc ctgtgcgaga 1500 atccatggtt gatgcagtcg atatggagat agaacgagca gccgcattca aggtctactc 1560 gcctacgtct gacggccctg gtcttcgctg tgcggtgttg gactttgatg ggcacttgag 1620 aacaatggct cgtgtagggt gatgaaggtg gcattcttta aagcccagcc tttaagggat 1680 tggttctttt cctcgtccag aaactcttta tatgatgatg ttggtcctgg attgcagagg 1740 aagatagtgg gaatgccgcc tttaatttga attggcttcc cgtattttgt attgctttgc 1800 cagtcccttt gggcccccat gaattccttg aagtgcttga gatagtgggg gtcgacgtca 1860 tcaatgacgt tgtaccaggc gtcgtttgaa tgtacctttg gagactggtc caggtgtcca 1920 caaaggtaat tgtgtgggcc tattgaactg gcccatattg ttttccctgt tctgctatca 1980 ccttctagaa cagtactgat cgttctccat ggccgcgcag cgggaccgcc tatattttcg 2040 gatacccata cctctatgtc ttcggggact tgtgtaaaag aggatgataa gaacggacta 2100 acgtaagttt gtggcggatc ctggaagatt ctatctgcgt tagcagttat gttatggaac 2160 tgtaaaaaaa aggactttgg atctttttct ttaataattt gaagagcctc ggatttagtc 2220 gaagcattca acgcttccgc atatacctga gctaaatgct ggccctcccc ccttgcactt 2280 ctggcatcga cttggaaaag tcccccgtca acagattccc cgcccttttc catgtaagct 2340 ttgacatcgg accatgattt ggctccctga atgttcggat ggaaatgtgt tgatcgggat 2400 ggggagatga aatcgaagaa tctcgtgttg gtacattgga acttgccttc gaattggatg 2460 agaacatgga gatgaggcac cccatcctga tgtagttctc tgcaaaccct aatgaatttg 2520 ataatcgtcg ggaacgaaag ggcttgtaat tgggaaaggg cctcttcttt tgttaatgaa 2580 catcggggat aggttatgaa ataatttttg gcatttattt gaaaacgacc ggctcttggc 2640 atattggctg tcgttttgga tcgggggaca ctcaaaactc caggggaacg gtggaatggg 2700 ggacattata tatgatgtcc cccaatggca tatgtgtaaa taggtagact tccattcaaa 2760 atttgaatgc cgaatatggg cggccatccg attaatatt 2799 //