ID JN052074; SV 1; linear; genomic RNA; STD; VRL; 4735 BP. XX AC JN052074; XX DT 11-DEC-2011 (Rel. 111, Created) DT 24-FEB-2012 (Rel. 111, Last updated, Version 2) XX DE Chocolate lily virus A isolate KP2 segment RNA2, complete sequence. XX KW . XX OS Chocolate lily virus A OC Viruses; Riboviria; Picornavirales; Secoviridae. XX RN [1] RP 1-4735 RX DOI; 10.1007/s00705-011-1166-x. RX PUBMED; 22075920. RA Wylie S.J., Luo H., Li H., Jones M.G.; RT "Multiple polyadenylated RNA viruses detected in pooled cultivated and wild RT plant samples"; RL Arch. Virol. 157(2):271-284(2012). XX RN [2] RP 1-4735 RA Wylie S.J.; RT ; RL Submitted (01-JUN-2011) to the INSDC. RL Plant Virus Group, WA State Agricultural Biotechnology Centre, Murdoch RL University, South Street, Perth, WA 6150, Australia XX DR MD5; 36d0fa249c038502bcdab0a1359154e1. XX CC GenBank Accession Numbers JN052073, JN052074 represent the complete CC genome of Chocolate lily virus A. XX FH Key Location/Qualifiers FH FT source 1..4735 FT /organism="Chocolate lily virus A" FT /segment="RNA2" FT /host="Dichopogon strictus" FT /isolate="KP2" FT /mol_type="genomic RNA" FT /country="Australia" FT /collected_by="S. Wylie" FT /collection_date="01-Nov-2010" FT /db_xref="taxon:1120751" FT CDS 253..4398 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:G9F9Q1" FT /db_xref="UniProtKB/TrEMBL:G9F9Q1" FT /protein_id="AEV45822.1" FT /translation="MSYCDHKICKFVSRHRTCKDLAAAKLVLQTGVWRIHSEETFESAG FT HCKLITYDRFQGAKLYVSRNYLTDIFYLFLIGCFFLYFFSNLWLFLPFLIFTTLFCSVF FT LQNISSCHHELLYFSLQDRVVLRLLTFLTNLIIMSSQRVQEALNLGARQFDTGASDLGR FT ALAVARDRGLDQIANVQQTTPKLFNEISQAMRSNKIHVKPNAIVKLVKKEFISFNTQDV FT AITRVLEDTRTEQNIPLPDIVDVYKAENSLRTHQSKQAHTDEPKTLTVDVIALTSSLHV FT PVQNDGVMLTIAVDGRAIEPEKAIIGGHIHSAVETETATSVMFPQFSLSTRDPHLDHAV FT KVVTVGSGFGLESGSVVGVVSPSVAGSVTKRPHTTFVNPGIRNFLKDKTKENAPILWEK FT CVPIFPRITDIPAVSEIVLPWKSCSRGLEYCASTSNSLATWKPGGNSNSSARFKLPERF FT RVDAVTRRPEQLLDDGYTTDGDAAAQGDEDRQGKITVAAFAEQTLPGTDTLETHFAGTI FT GTVPISFSSTARDGDVLATVSLFDGIKFLKIPTPAMQMVMNNPSCRPILRATLRMETTK FT MHSAPVVLVWDSSDRFTPERARNIGRSLNMASTVVNLHDNRGGSYLEIATVGHTGIIPV FT LSGNADHVGSFYVVALGHSIPGVPSLVGSLEISLRVGTVGFSTTPPSRSLPVDDIAHHF FT TLGNSIHIPELKTNSFLGMIQLDSKVVSGDAYAIDYIPGGGYPDATGKQCYFSPQSSIM FT NFWNLWRGAVEFEIAISSCLVIGGSATLFALPHGAPLLFYEYSYLHRFKHVELSLSGSH FT RTTFRVDQSSWLLYSSVMGDDNFKGLDESSNSLRLLLVVTQPPFSAEGFTNVPVKVIIR FT SIGHYNLELCERASYGNQASCHFSPTFNRAKITSDIWQERAQASCPSNMDDFARLVVFK FT PKSAETGKGFLITIPASLGFSRSVFGKQADKINSATELKEGNFYVEVRNPYRKLVLGWS FT YYRCAMEFMIVPTFAEGQGEMITACLLQSPLEDYSFGVVPNESGAPRSLAGPVTYTADG FT RNLVQSLMVPRPPFFKRGLIRKDQFARYLDTCGILAITVPAASTCTLLEVYVRPLGAIS FT VAGEALPPIGIENGKKLFRAPVFKCGNAITGEFNMGVSTTSATSSKIQAQGGGCTSGNL FT TAFEIPSGSIPEEAYVNIFFGDFLFMRLSHDARVAFLFPHEPVEIEQCASFMDRYTHFK FT NEYLSLVKNPTPVKPSVDRTIAERELLMIINNENMGDDESDILCLQCLQPFFHFGSLSF FT HNKRCKGSSKWVFDHKQPRAYLSYADIYDIEVGDSEVFKKGVHDSLVIDEGVAYLMDTP FT RTRRMNYAEWKYKERRRRRNSRRGNWYGTQLQREFYDY" FT mat_peptide 253..1293 FT /product="MP" FT mat_peptide 1294..4395 FT /product="CP" XX SQ Sequence 4735 BP; 1207 A; 1053 C; 1043 G; 1430 T; 2 other; cctaagtcac agttactttc cacttccatc ctaggaacca catattggtg ttactcacga 60 atttcaccag tttagtggtt tccttctttt cttttatttg tttccttttg gttctggtaa 120 gcttagtata gttacttata tcttattact gctcttttct tttacggcaa atccaaccct 180 cacacttgtg tggccaaatg ggctctggtc ttctttcaat tttgaatctt gcaaattttg 240 cgttcaccca caatgtccta ctgtgatcac aagatttgca agttcgtttc acgccatcgc 300 acttgcaaag atttagctgc tgccaaatta gtcctgcaga ctggagtgtg gcgcatacac 360 tctgaagaga ctttcgagtc tgcagggcat tgtaaattaa tcacctacga taggttccag 420 ggagcgaagc tttacgtatc tcggaactac ctcactgata ttttttatct tttcttgatt 480 ggttgtttct ttctttattt cttttccaat ttgtggttgt ttcttccatt cctaatattc 540 acaaccttgt tttgtagtgt tttcctacag aacatttcta gctgtcacca cgaactgcta 600 tatttctccc tgcaagaccg agttgttctc cgtctcttga ctttcctgac taatttgatt 660 attatgtctt cacaaagagt tcaggaagcc ctgaatttgg gtgctcgtca gtttgatact 720 ggagcatcag atttgggcag ggctctcgct gttgctagag atcggggact tgatcaaatc 780 gcaaatgtgc aacaaaccac cccaaaactg tttaatgaaa tttcccaagc catgcgttcc 840 aacaaaattc acgtcaagcc caatgctatt gttaaattgg ttaaaaagga atttatttcc 900 tttaacactc aagatgtggc tattacgaga gttttggagg acacacgcac agaacagaat 960 attccattgc ccgatatagt cgatgtttac aaggctgaga attctctacg cacacaccag 1020 tcaaagcaag ctcatactga tgaacccaag actttgactg ttgatgtcat tgcactgact 1080 tcaagtctgc acgttcctgt acagaatgat ggagtcatgc tgactattgc tgttgacggc 1140 cgagccattg aaccagaaaa ggccatcatt ggtggtcaca ttcatagtgc cgttgagact 1200 gaaactgcta cttcagtcat gtttcctcag ttttccctga gcacacgtga cccacacttg 1260 gaccatgcgg tcaaagttgt caccgtaggc agtggttttg gcttggagag tggttctgtt 1320 gtaggagtgg tttctccatc tgttgcaggc agtgtcacta aacgtccgca tactaccttt 1380 gttaatcctg ggatcagaaa ttttctcaag gataaaacta aggaaaacgc tcctattctg 1440 tgggagaaat gtgtgccaat ttttcctagg ataacagaca ttcctgcagt ttctgagatt 1500 gtgctcccat ggaaatcttg ttcccgtggg ctagaatatt gcgcttccac gagtaatagc 1560 ctagctactt ggaaaccagg aggcaattca aattcttctg caagatttaa attgccagag 1620 cgattccgag tagacgcggt gactcggcgt cctgagcagc tgctcgatga cggctacacc 1680 actgatggtg atgcagcagc tcagggcgac gaggaccgtc aaggcaaaat taccgtcgct 1740 gcttttgcgg aacaaacatt gccgggcacg gacacattag aaactcattt tgcaggtact 1800 ataggaacag tccccatctc attttcttca acggcaagag atggggacgt acttgccact 1860 gtttcactgt ttgatgggat taagtttctg aaaatcccaa ctcctgccat gcaaatggtg 1920 atgaataacc cctcatgtcg tccaattttg agagcaacct tgcggatgga aacgactaaa 1980 atgcattctg cgcctgtggt tcttgtttgg gattcttctg accgattcac gcctgagaga 2040 gctcgcaaca tagggcgaag tttgaacatg gcttccactg ttgtcaatct gcatgacaat 2100 agaggaggga gctaccttga gattgccact gttggtcata ctgggattat ccccgtcctg 2160 tctggcaatg ctgaccatgt tggttcattc tatgttgtag ctttggggca cagtatacct 2220 ggggttcctt ctctggtggg ctccctagag atctcgttgc gagttggcac agtcggtttc 2280 tccacaaccc ctccttcacg atcattgccg gtcgatgaca tagctcacca tttcactctt 2340 ggcaatagta tccatatccc agaactcaaa acgaattcct ttctgggaat gatacaactt 2400 gattccaaag tagtgagtgg tgacgcctat gctatcgatt atatacccgg tggggggtat 2460 ccagacgcaa caggcaagca gtgttacttc tcccctcaat ccagcataat gaatttttgg 2520 aacttatgga ggggtgccgt ggaattcgag atagcgattt catcatgtct tgtcatcggg 2580 ggctcagcaa ctttgtttgc tttgccccac ggtgcacctt tgctattcta cgaatattca 2640 tacctccata gattcaagca cgtggaattg tccttgtcag ggtcacatcg caccactttt 2700 cgtgtggacc aatcaagctg gctcctgtat tcatccgtga tgggcgatga taactttaag 2760 ggattagatg aaagctctaa cagcctaaga cttctcttgg ttgttactca gccacccttc 2820 tctgccgaag gattcaccaa tgtacctgtt aaagtcatca ttcgttctat tggtcattac 2880 aatcttgaac tgtgcgaacg ggcaagctat gggaatcagg cgtcgtgtca tttcagtccc 2940 acattcaata gagccaaaat cacctctgac atttggcagg aaagagctca agcttcgtgt 3000 ccttcaaaca tggatgattt tgcacgactt gtggttttca aaccgaaatc agctgaaaca 3060 ggcaagggct tcttgatcac tattcctgca agtctaggat tctctcgatc ggttttcggt 3120 aagcaagcag acaaaatcaa ttcagccact gagcttaagg aaggaaactt ttatgttgaa 3180 gtgcgcaacc catataggaa attagtcttg ggctggtcct attaccgttg tgctatggag 3240 ttcatgattg ttcctacttt cgcagaaggg caaggagaga tgattactgc ttgtttgttg 3300 caatcgccgc ttgaggatta ctcttttgga gtagttccca atgaaagtgg ggctccgcga 3360 tcattggcag gaccagtaac atacacagct gatggcagaa atcttgtcca atccctgatg 3420 gtaccacgcc ctcccttttt caaacgaggc ctcataagga aagatcagtt tgctcgctat 3480 cttgacacat gcggaatttt ggctattaca gtaccggcag caagcacgtg cactctcctg 3540 gaagtctacg tgcggcctct tggtgctatt tctgtggctg gtgaggctct ccccccaatt 3600 ggaattgaga acgggaagaa attatttcgc gccccagtat ttaagtgcgg aaacgccatt 3660 actggagaat ttaacatggg agtttctaca acttcagcca catcaagcaa aattcaggct 3720 cagggcggcg ggtgcacttc aggcaatctg actgctttcg aaattccaag tggcagtatc 3780 ccagaagaag catacgtgaa tatctttttc ggcgattttc tattcatgcg gctctctcat 3840 gatgctagag ttgcatttct atttccccat gaaccagttg agattgagca atgtgcttcc 3900 ttcatggaca gatataccca tttcaaaaat gagtatttgt cccttgttaa gaatcctacg 3960 ccagtcaaac ctagcgtaga ccgcactatt gctgaacgag aacttttgat gatcattaac 4020 aacgagaata tgggggatga cgaatcagat attctgtgcc ttcaatgcct acagccattt 4080 ttccactttg gctccctgtc atttcacaac aaacgatgca aagggtcctc taaatgggtg 4140 tttgaccaca agcaacctag agcgtatctt agctatgcag acatatatga cattgaagtt 4200 ggtgatagcg aggtttttaa gaagggagtg cacgactcac tggtgattga cgaaggagtt 4260 gcctacctga tggacactcc aaggacacgt cggatgaatt atgctgaatg gaagtacaag 4320 gaaaggcgtc gcaggaggaa ttctaggaga ggaaactggt atggcaccca gttgcagagg 4380 gaattttatg actattagtg ccatatgttt gtccgtttac attctgtgaa acggtctggc 4440 tttacatttg tagccaccta ggaggtagga ctctgggttc caacaaatga ataaactgag 4500 tgtttttatc tgtatttgag tgtgacaaaa taactttgtt ttatattatt agcttgcttt 4560 cattgtgtat ttattgtgat caggttaaac caaggctttc tcatttgtag ccattaagta 4620 actaaatatt agtttgacaa atgaactgaa taaattatgg tgtgctttgt ttactgcatg 4680 aatgtgtgta atttcaacgc ttacaataak wtattcagtt catttgtcaa actaa 4735 //