ID JN052073; SV 1; linear; genomic RNA; STD; VRL; 6139 BP. XX AC JN052073; XX DT 11-DEC-2011 (Rel. 111, Created) DT 24-FEB-2012 (Rel. 111, Last updated, Version 2) XX DE Chocolate lily virus A isolate KP2 segment RNA1, complete sequence. XX KW . XX OS Chocolate lily virus A OC Viruses; Riboviria; Picornavirales; Secoviridae. XX RN [1] RP 1-6139 RX DOI; 10.1007/s00705-011-1166-x. RX PUBMED; 22075920. RA Wylie S.J., Luo H., Li H., Jones M.G.; RT "Multiple polyadenylated RNA viruses detected in pooled cultivated and wild RT plant samples"; RL Arch. Virol. 157(2):271-284(2012). XX RN [2] RP 1-6139 RA Wylie S.J.; RT ; RL Submitted (01-JUN-2011) to the INSDC. RL Plant Virus Group, WA State Agricultural Biotechnology Centre, Murdoch RL University, South Street, Perth, WA 6150, Australia XX DR MD5; 3a5758a58b37d23e27c5c146940a815e. XX CC GenBank Accession Numbers JN052073, JN052074 represent the complete CC genome of Chocolate lily virus A. XX FH Key Location/Qualifiers FH FT source 1..6139 FT /organism="Chocolate lily virus A" FT /segment="RNA1" FT /host="Dichopogon strictus" FT /isolate="KP2" FT /mol_type="genomic RNA" FT /country="Australia" FT /collected_by="S. Wylie" FT /collection_date="01-Nov-2010" FT /db_xref="taxon:1120751" FT CDS 193..5853 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:G9F9Q0" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR004004" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR014759" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:G9F9Q0" FT /protein_id="AEV45821.1" FT /translation="MSLMEKLNFANLKQHLGENPSEAEILQYQYDCIDSIQTLPGFPII FT KEAILRNRDLITEDSDPQDLDEAMLYLAVTHRSIMPALHDADATRRIMSGYFVTGMFDD FT DIAVEHETCQGLMDGACFELGRNLAGKLIAKFCAAAPSYSSLGSIFSKFDQVLDRILSA FT FDWIAGVVENSCAVLSAIRAKVTAFFKNAFNKLGDILQHFSYVMPLIFGSLLTACVFYL FT VNRIIGCFSPEHQMSSARLIEIIAGVCCIIGVKEFGCALLMMTKRDKTDFLNLIKRFFG FT CDDESADFSGDPANLDEAADVAAQSGVADLGFFAATVGLISFFMDGQSKNAFLRVAYAS FT SFIKTGVDSYEKCSKMMSSLSTWLFSYLGRIDAQYSGAAQALLIHTGIGVTEWIDNCEK FT LLVEGNSTTRHMQDIMSEARTLVDQGKTISQYLMQNDSGANYIFRQKFVAVEKQLNDFY FT TSLKKSNLCNKYRATPFVITFMGGPGTGKSTMARPFAEAFLDEMGESKVDRIYSRNGGD FT AYWSNYTRQPMVVFDDFGQTKQENGRFDEENLIQLVSCNPYMLPMAAVEDKGRPFDSKY FT MILCTNRTYANPGADLASEDAFLRRRHLVFEVHQNPDVPYNPAACYDNLLFTVKDSLRP FT MMEKSPDTTGMNFFEAIAFAVNTATAFREKESEALRNIGRNFSHEFVRVDGQLRTRVPR FT ARIEMLAEEPIAAQAGVGEASYLFSVERIVSQGGHFPNFAELVETTRRNNELGLVDTGY FT EFYSTDFVCDQDGQIVHKNWTQEERLAIKFALNNATICHYISALNLSCLVEEIDNTLLN FT EFISLVDMTKLHEDGTVTSQNKNEALAEALREFWDKLSPRGRKLLYVIAEYRCVRYSSF FT FAGLRSVIRDFNCAELWARVPMWVKFSLGILALYAGSCVLLRAFDKISTLISLSPTHIL FT ATLIGSSSLAQGTSSGGDERVSRAMRRSVRAFSAQGEMSVQVPHQGAWEKCEKARVHLE FT GFSVTTGRPFAVYGVAYAERKIVCTTHTINELDVMQPIFLRTQDIAYTCFIRKDAIQYE FT QYKNSQGQTILGNLASVKYSNLTPAVPAFTAFVPNYSKSLPNNENAWIMANLSPLLSAV FT PLKVIANKETMVDQFKFDLNNTVWEKRDCTIVKSVGKAGMCGRLLLVERHNTLAIAGMH FT TYGREYPPLSGFADIPDFVTNPVIVAQGPSDDAEFIYFDAEEEITPMVSKIGYVSTAVP FT QLSKSQIEESPIFDSLCQKLGDPKVAPTILSKHDPRPPTPYDPYSAGIRKFDKEVGPFD FT WSEESDLQFACAEILDTWQTKKPEKFAIETVCSLDVAINGVHGLPFAENFPIGTSEGFP FT WVLDRARNESGKERFFEEVAPGHRVPRGSWVEDIAEIEEAAYRGDYLTTTITCAKDEKT FT KLDKVFVNPKTRIFEMLNFCLNLVIRKYFFFWMQWMMSLHSDLPCKVGINPFSYDWDIM FT AMKHSAYANHFCGDYSGFDTNTNVELVVRIGDMISDMADDGPRNRVIRRNLLRCVLNRQ FT VIVGRDLYKVKGGTPSGFALTVMINSVVNEIYLKMAWFGLSRKYDPLLARDADLRHHVC FT MSVYGDDNVVSFSHNVANWYNLVTISSYLRPFGIKLTDGQKTGVMVPFTSFDKIDFLKR FT KWVQGDKGWFRCPLDPVSIESQLYYLKRSDDPIDALRVNVDNALREAFQHGTDYFVRIK FT CAIVSSLQEAQIDYLPPSELDCARFWAEQRSCDHLPIHFADPRYRAINILDTKVVQTDV FT GFSMSVHEYRNRREEMEKLNRLCIIGGDSKLETGLTVNGAKFAVVGAKNSELVDSLARL FT FKIGFFTGKKWVFSALNPSLAHVVHICLLNVTKEHRLETVQYVSQLDDKSYKFMIELNA FT KIGLVPKPLLEE" FT mat_peptide 202..1464 FT /product="protease co-factor" FT mat_peptide 1465..3015 FT /product="helicase" FT mat_peptide 3016..3087 FT /product="VPg" FT mat_peptide 3088..3771 FT /product="protease" FT mat_peptide 3772..5850 FT /product="RdRp" XX SQ Sequence 6139 BP; 1591 A; 1263 C; 1440 G; 1845 T; 0 other; ctttccttgc ttttggttct tactgatcct taagcgactc cgtttttcat tagttcttat 60 aaactgtccc ttctatttta cggcaaatcc aacctgacac cgtgtggtgc gccaaacagg 120 ctctggaatt tctttcccac tactttctct cctttctctg taaagttgtt ctaatttggt 180 tctttccctc caatgtcctt aatggaaaaa ctgaatttcg ccaacctaaa acaacacttg 240 ggagaaaatc cctctgaggc agagatcttg cagtatcaat atgactgcat tgattccatc 300 caaaccctgc ctggtttccc aattataaaa gaggctattt tgagaaatcg tgacctcatt 360 actgaagatt ctgatcccca ggatcttgat gaggccatgt tatatctggc tgtcacacac 420 cgctcaatca tgcctgccct gcatgatgcg gatgccactc gaagaattat gagtggctat 480 tttgttactg gtatgtttga tgatgacata gccgtggagc atgagacatg tcaaggcttg 540 atggatgggg cttgcttcga gcttggtcgc aatttagctg gcaagttaat tgcgaaattt 600 tgtgctgctg caccatctta ttcatcactg ggatctattt tctcaaaatt tgatcaggtt 660 ctcgatcgaa ttttgagcgc tttcgattgg attgcaggtg tggtggaaaa ttcatgtgct 720 gttttgtctg ccatcagagc caaggtcact gcatttttca aaaatgcatt taataagttg 780 ggtgacattc ttcaacactt tagttatgtc atgcctctta tctttgggag cttgctcacg 840 gcgtgtgtat tctatctggt taatcgcatc attggttgtt tttccccaga acaccaaatg 900 agttctgcaa gactcattga gattattgcc ggcgtttgct gcataattgg tgtaaaagaa 960 tttggatgtg cattgctgat gatgaccaag cgtgataaaa cagacttttt aaatctgata 1020 aagagattct ttggctgtga tgatgagagt gctgatttca gtggagatcc tgctaacctt 1080 gatgaagctg ctgatgttgc tgcacagagt ggagtagccg accttggctt ctttgctgcc 1140 acggttggcc taatttcttt cttcatggat ggccaatcca agaatgcctt tctccgcgtg 1200 gcttatgctt caagtttcat taagactggt gtggatagct atgaaaaatg ttcgaaaatg 1260 atgtcgtctt tatcaacttg gctcttctct tatttgggtc gaattgatgc ccaatactct 1320 ggtgctgctc aagcactcct cattcacact gggattggcg ttactgaatg gatcgacaat 1380 tgcgagaagc tactagtaga aggtaattct actacccggc atatgcaaga tattatgtcc 1440 gaggcccgca ctcttgtcga tcaaggcaaa acaatctcgc aatatttgat gcagaatgat 1500 tctggagcaa actacatttt tcgccaaaag tttgtggccg tggagaaaca actgaatgat 1560 ttctacactt ctttaaagaa aagcaatctc tgtaacaaat acagggccac cccatttgtt 1620 atcactttta tggggggtcc tggcactgga aaatccacga tggcacgtcc atttgccgaa 1680 gcctttctgg atgagatggg ggagtcaaag gtggacagaa tctactcccg aaacggtggt 1740 gatgcatatt ggtccaacta tacgcgccaa cccatggtag tgtttgatga ttttgggcaa 1800 acaaaacagg agaatggtag gtttgatgaa gaaaatctta tacaactcgt ctcctgcaat 1860 ccgtacatgc taccaatggc agctgttgag gataaaggtc gtccttttga ctccaaatac 1920 atgattttgt gcaccaacag aacatatgca aatcctggag ctgatttggc tagtgaagac 1980 gcctttctgc gaaggcgaca tcttgtgttt gaggtgcacc agaaccctga cgtgccctac 2040 aatcccgcag cttgctatga taatctgctt tttactgtga aggattcgct caggcccatg 2100 atggaaaaga gtcctgacac gacaggaatg aactttttcg aggccattgc cttcgctgtt 2160 aacacggcaa ctgctttccg tgaaaaagag agtgaagcat tgcgcaacat tgggagaaat 2220 ttttctcatg aatttgtgcg cgttgatggc caactcagga cacgagttcc tcgagctcga 2280 attgaaatgt tagcggaaga gcctattgct gcgcaagctg gtgttggcga ggcttcttac 2340 ttgttttctg tagagcgcat tgtttcgcaa ggtggtcatt ttccaaattt tgctgaactt 2400 gttgaaacaa cacgaagaaa caatgagttg gggttagtcg acactgggta tgagttctac 2460 tcaactgatt ttgtgtgtga tcaagatgga caaattgtcc ataagaattg gactcaggag 2520 gagaggttgg caattaaatt tgcactcaac aatgccacca tttgccacta catttcagcc 2580 ttaaatttgt catgtttagt tgaggaaatt gacaatacac tgctaaatga gtttatcagt 2640 ctggttgaca tgaccaagct ccatgaggat ggcactgtga cctcacaaaa caagaatgaa 2700 gcccttgctg aagcactgcg cgaattttgg gacaaactat cccctagggg ccgcaagctg 2760 ttgtacgtca ttgctgagta ccgttgtgta cgctactctt cattctttgc aggtttgcgc 2820 agtgtgatcc gtgattttaa ttgtgctgaa ctgtgggctc gcgtcccaat gtgggtgaaa 2880 ttttctctag gtatcctagc tctttatgct ggttcctgtg tgcttctgcg agcatttgac 2940 aaaatttcca ccctaatttc cctgagccca actcacattt tggcaactct tattggttcc 3000 tcgtctttgg cacagggcac ttcttcaggt ggagatgagc gtgtatcgcg tgccatgcga 3060 cgatctgtca gagccttttc tgctcaaggg gaaatgtctg tgcaagttcc ccaccaaggt 3120 gcctgggaga agtgtgagaa agccagggtt caccttgagg gtttctcagt cactactggg 3180 aggccttttg ctgtgtatgg tgtagcgtat gctgaaagga aaattgtgtg cacaacccac 3240 accatcaatg agctcgatgt tatgcaaccg atattcttgc gaacccaaga catcgcatat 3300 acttgtttca tacggaaaga cgcaatccaa tatgaacagt ataagaattc gcaaggacag 3360 acaatactcg ggaaccttgc cagcgtcaag tattcaaatt tgactcctgc tgtgccggct 3420 ttcactgcat ttgttcctaa ttattctaaa tccttgccca acaatgagaa tgcttggatc 3480 atggccaacc tgtctccttt gctgtccgca gtacctttga aagttatagc aaacaaggaa 3540 accatggttg accaattcaa gtttgatttg aataatactg tttgggagaa acgcgattgc 3600 acgatcgtta aatccgttgg gaaagcaggc atgtgtggga gactcctgct ggtggaacgc 3660 cataatacac ttgccatcgc cggaatgcat acatacggaa gagagtatcc tcccttaagt 3720 gggtttgcag atattcctga ttttgtgact aatcctgtga tagtcgcaca aggcccttcg 3780 gacgatgcag aattcatcta ctttgatgct gaggaagaga taacgccaat ggtgtccaaa 3840 attggatatg tgagtacagc tgttccacag ttgtcaaaat cccagattga ggagagtcca 3900 atttttgatt ctttgtgtca gaaattgggg gatcccaagg ttgcgccaac aattttgtca 3960 aagcatgatc cccgcccccc tacaccttat gatccctaca gcgcaggcat taggaaattt 4020 gataaagagg ttggtccgtt tgattggagt gaggaatcag acttgcagtt cgcatgtgct 4080 gagatactag atacgtggca gaccaagaaa cctgagaagt ttgccattga gactgtctgc 4140 tctctcgatg tggcaataaa tggagtccac ggattaccat ttgctgaaaa tttccccatt 4200 ggtacatcag agggttttcc ctgggtcttg gaccgggctc gaaatgaaag tgggaaagaa 4260 cgattctttg aggaggtagc cccaggtcat cgtgttccaa gaggcagttg ggttgaggat 4320 attgcggaaa ttgaagaagc tgcctatcgt ggtgattacc ttactaccac gattacttgc 4380 gccaaggatg agaagaccaa actggacaag gtgtttgtga atcctaaaac caggatcttc 4440 gagatgctga atttttgtct caaccttgtt atcaggaaat actttttctt ctggatgcag 4500 tggatgatga gtttgcattc ggacttacca tgcaaggttg gcatcaaccc tttctcatac 4560 gactgggaca taatggcaat gaagcattca gcatatgcta atcatttctg cggagattat 4620 tctggtttcg acaccaatac aaatgttgaa ttggtggtgc gaatcgggga tatgatttct 4680 gacatggcag atgatgggcc tcgcaatcga gtaatccgca gaaatttgtt gaggtgtgtg 4740 ctgaaccgtc aggtgatagt tggaagggat ttgtacaaag tcaaaggtgg tacaccttca 4800 ggcttcgctc tcacggtgat gatcaattca gttgtgaacg agatttattt aaaaatggcc 4860 tggtttggtt tgtctcgcaa gtatgaccca ctgttggcta gagatgctga tttgcgccat 4920 cacgtgtgta tgagtgtgta tggggatgac aatgttgtct cattctctca taacgttgct 4980 aattggtata atctagtgac aatttcaagt tacttgcgtc cattcggcat caaactcact 5040 gatggccaga aaacaggcgt catggtacca ttcacttcct ttgacaaaat tgattttttg 5100 aaacgaaaat gggttcaagg cgacaaaggt tggttcagat gtcctcttga tccagtgtca 5160 attgaatctc aactgtatta cctaaagagg agtgatgatc ccattgatgc cctgagggtc 5220 aatgtggata atgcactgcg agaggctttt caacatggca ctgactactt tgtacgtatc 5280 aagtgtgcca tagtgagttc tttgcaagaa gcgcaaattg attacctgcc ccctagtgag 5340 ctggactgcg caagattttg ggctgagcaa cgttcatgcg atcaccttcc gatccacttt 5400 gctgaccccc gctaccgcgc cattaacatc cttgatacca aggttgttca aactgatgtt 5460 ggttttagca tgagtgtgca tgagtatcga aatcggcggg aggaaatgga gaagttaaac 5520 cgtttgtgca ttattggcgg ggattcaaaa cttgaaactg gattaacggt caatggagcc 5580 aagtttgctg tcgtcggagc caagaattct gaactcgttg acagcttggc aagattgttc 5640 aaaattggtt tcttcactgg aaagaaatgg gtcttttccg ctctaaatcc aagtcttgca 5700 catgtcgtgc acatatgcct tctgaatgtc accaaggaac atcgccttga aactgtgcaa 5760 tatgtctcac aactggatga caagagttac aagttcatga ttgaattgaa tgcaaagata 5820 ggccttgttc ccaaaccgtt gcttgaagaa tgatctttct aaatgtttgt ctgtttacat 5880 tctgtgaaac agtctggctt tacatttgta gccacctagg aggtaggact ctgggttcca 5940 acaaatgatt taattactta agtgcattgc ttgctttgaa tttgtgtgac tatagcatcg 6000 tgtgtatagg taattggtat taagacttgt gcttgtagtc gttgtctgta caaataaact 6060 gaataattca agtgtgattt gtttaccgca tatgttttgt gtgattttaa attatctttg 6120 tggattatca gcgcaaaaa 6139 //