Dbfetch

Dbfetch

ID   JN033875; SV 1; linear; genomic RNA; STD; VRL; 560 BP.
XX
AC   JN033875;
XX
DT   02-MAR-2012 (Rel. 112, Created)
DT   02-MAR-2012 (Rel. 112, Last updated, Version 1)
XX
DE   Cotton leafroll dwarf virus strain Nagpur coat protein gene, partial cds;
DE   and movement protein gene, complete cds.
XX
KW   .
XX
OS   Cotton leafroll dwarf virus
OC   Viruses; Riboviria; Luteoviridae; Polerovirus.
XX
RN   [1]
RP   1-560
RA   Mukherjee A.K., Chahande P.R., Meshram M.K., Kranthi K.R.;
RT   ;
RL   Submitted (26-MAY-2011) to the INSDC.
RL   Crop Protection, Central Institute for Cotton Research, Shankar Nagar Post
RL   Office, Nagpur, Maharashtra 440010, India
XX
DR   MD5; b38db3b731c5d6aa3968f516e504e8b8.
DR   EuropePMC; PMC5117868; 27904466.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..560
FT                   /organism="Cotton leafroll dwarf virus"
FT                   /host="Gossypium hirsutum"
FT                   /strain="Nagpur"
FT                   /mol_type="genomic RNA"
FT                   /country="India:Nagpur"
FT                   /collection_date="05-Jan-2011"
FT                   /PCR_primers="fwd_name: pl4f, fwd_seq:
FT                   gcgacaaatagttaatgaatacggt, rev_name: o3r, rev_seq:
FT                   gtctacctatttbggrttntggaa"
FT                   /db_xref="taxon:312295"
FT   CDS             1..>560
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:H8ZHB9"
FT                   /db_xref="InterPro:IPR001517"
FT                   /db_xref="UniProtKB/TrEMBL:H8ZHB9"
FT                   /protein_id="AEL16488.1"
FT                   /translation="MNTVVGRRTINGRRRPRRRNRRRQNQPVVVVQTPRNTQRRRRRRR
FT                   GGRNRTRGRIPSGPGASSETFVFSKDNLAGSSTGTVTFGPSLSDCPAFSNGMLKAYHEY
FT                   KISMVLLEFISEASSTSSGSIAYEVDPHCKLSTLSSTINKFGITKNGRKQFAASFINGQ
FT                   EWHDTSEDQFRILYKGNGSSSIAG"
FT   CDS             32..556
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /db_xref="InterPro:IPR001964"
FT                   /db_xref="UniProtKB/TrEMBL:H8ZHC0"
FT                   /protein_id="AEL16487.1"
FT                   /translation="MEEDDHVDATGVGKISQWLWSKPLGTHNAEDDEDEEVVIGQEDAF
FT                   LADQELQARHSFSRKTISREVPQELSRSGRLYQTAQLSAMECSRPTMNIRSQWSYWSSS
FT                   PRPLQHPPVPSLTKWIHTVNCLPSPPRLTNSESPRMGGSSLRRLLSTDRNGTTPPRTSS
FT                   ESYTKAMVPRR"
XX
SQ   Sequence 560 BP; 160 A; 144 C; 139 G; 117 T; 0 other;
     atgaatacgg tcgtgggtag acgcacgatc aatggaagaa gacgaccacg tagacgcaac        60
     aggcgtaggc aaaatcagcc agtggttgtg gtccaaaccc ctcggaacac acaacgcaga       120
     agacgacgaa gacgaggagg tcgtaatcgg acaagaggac gcattcctag cggaccagga       180
     gcttcaagcg agacattcgt tttctcgaaa gacaatctcg cgggaagttc cacaggaact       240
     gtcacgttcg ggccgtcttt atcagactgc ccagctttca gcaatggaat gctcaaggcc       300
     taccatgaat ataagatctc aatggtctta ctggagttca tctccgaggc ctcttcaaca       360
     tcctccggtt ccatcgctta cgaagtggat ccacactgta aattgtctac cctctcctcc       420
     acgattaaca aattcggaat caccaagaat gggaggaagc agtttgcggc gtcttttatc       480
     aacggacagg aatggcacga cacctccgag gaccagttca gaatcttata caaaggcaat       540
     ggttcctcgt cgatagctgg                                                   560
//