ID JN032736; SV 1; circular; genomic DNA; STD; VRL; 7949 BP. XX AC JN032736; XX DT 30-AUG-2011 (Rel. 109, Created) DT 07-DEC-2011 (Rel. 111, Last updated, Version 3) XX DE Dahlia common mosaic virus isolate DCMV-NZ, complete genome. XX KW . XX OS Dahlia common mosaic virus OC Viruses; Ortervirales; Caulimoviridae; Caulimovirus; OC unclassified Caulimovirus. XX RN [1] RP 1-7949 RX PUBMED; 21960043. RA Hadfield J., Linderme D., Shepherd D.N., Bezuidenhout M., Lefeuvre P., RA Martin D.P., Varsani A.; RT "Complete genome sequence of a dahlia common mosaic virus isolate from New RT Zealand"; RL Arch. Virol. 156(12):2297-2301(2011). XX RN [2] RP 1-7949 RA Varsani A., Hadfiled J., Linderme D., Shepherd D.N., Bezuidenhout M., RA Lefeuvre P., Martin D.P., Varsani A.; RT ; RL Submitted (27-MAY-2011) to the INSDC. RL School of Biological Sciences, University of Canterbury, Private bag 4800, RL Christchurch 8140, New Zealand XX DR MD5; 05d16d3790c6d724b3e13e9a0b9bac23. XX FH Key Location/Qualifiers FH FT source 1..7949 FT /organism="Dahlia common mosaic virus" FT /host="Dahlia variabilis" FT /isolate="DCMV-NZ" FT /mol_type="genomic DNA" FT /country="New Zealand" FT /collection_date="25-Feb-2008" FT /db_xref="taxon:1077151" FT CDS 1..969 FT /codon_start=1 FT /product="movement protein" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:G3JWZ4" FT /protein_id="AEL30037.1" FT /translation="MDVSKHNSEISEDHSDNNQFIFKQEDNLGYQADIMIHHDMLEKIN FT RKNLSLSKDEIFHDSTWNLTKKILSRKNEIVYCVSTQEMSVDISDASGKVYLPLLTKNE FT VNKKLSKLKPELRKKITTVHLGAVKILVTAQFQSGIDTPIKMALIDNRIKTRKDCLLGA FT AKGNLCYGKFMFTVYPKFGVSLSTQRFDQILSFIHEFTRSDLMEKGDKIFSVTYLTAYA FT LTNSIHSIAYKNQSNIEIDELFQELGNVQERPFCDISSQEEQWSINIDHNKTRINQPRQ FT SIRNNTITIGESSNAPDQLLRQMSKNVDSLRTKLEQICGNE" FT CDS 962..1453 FT /codon_start=1 FT /product="aphid transmission factor protein" FT /db_xref="GOA:G3JWZ5" FT /db_xref="InterPro:IPR004917" FT /db_xref="UniProtKB/TrEMBL:G3JWZ5" FT /protein_id="AEL30038.1" FT /translation="MSDNITSIPHIYKKNRYVKLKSLEPGTKNRRYTFASDNDKSNISS FT IARHCNNLNQIVARNWLKLSKLTSYLGLEKDESEPFSKNKETFNKFFKDLSKTFKEGGD FT DKEKQPNLLPVLEELSNRLGKLDTKIPKDLVTKSELEVLIKDFDKRLEKIQDNIKAIIG FT " FT CDS 1450..1812 FT /codon_start=1 FT /product="DNA binding protein" FT /db_xref="GOA:G3JWZ6" FT /db_xref="InterPro:IPR004986" FT /db_xref="UniProtKB/TrEMBL:G3JWZ6" FT /protein_id="AEL30039.1" FT /translation="MTTLATIKEISDETLSLVKELLTMIKQIIDKPESSIQTELTEPIA FT AKIIKDISDKIDKCECAEKLKQELKAGKDMQVSKPEDPEKPSTKGFQNYSYPNWGVGIE FT SLRSSGNPKALEWPPK" FT CDS 1797..3314 FT /codon_start=1 FT /product="capsid protein" FT /db_xref="GOA:G3JWZ7" FT /db_xref="InterPro:IPR001878" FT /db_xref="InterPro:IPR001988" FT /db_xref="InterPro:IPR036875" FT /db_xref="UniProtKB/TrEMBL:G3JWZ7" FT /protein_id="AEL30040.1" FT /translation="MATQMTIETSRYHQTLLDRLEEIQLKEEYKEMTEIIQLLSLQEEE FT IVAEFNQNAQLRRMYFPNEVQEENFYQVTDDAEVIQESEESVSEPETERISEEEEDFNA FT NPVRFRDDGSFYISEDDIPPHKYRIYDEDTPSSSKNDFFEKKPNFPPKKFGIPTNGLNN FT NILDIDCITDMNIRKQMIDDWLTNLSLIIQSNPTSFEQARQVLILAEHHSRGNVQNFIK FT KIKWNETLSGSKMLDEITQGLYTMFLGLDYISNSINEQQKISQEAINIMTKAQLCDLCY FT LDQFTCLFEKNLGKLDPEEFPKWTEIYLRKIPVVGNHAWEEWKKEPSNPLKYSIAYATR FT LVKKEIARYCDFKNTTKQLKKFRKNCCNKYKEPNYLIGCTETSCKPNYKKKKSTRLKPK FT YKKKWVKKKKKFQPGKYFQKKPKGNQKPKTKYCPQGKKKCRCWICAEEGHYANECPSRQ FT TNQAKVKLLLEAQQEDYIPIEDPYMDYLTVYTIEIVSDTETEDEDSE" FT CDS 3311..5332 FT /codon_start=1 FT /product="polymerase polyprotein" FT /db_xref="GOA:G3JWZ8" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR000588" FT /db_xref="InterPro:IPR021109" FT /db_xref="InterPro:IPR041373" FT /db_xref="UniProtKB/TrEMBL:G3JWZ8" FT /protein_id="AEL30041.1" FT /translation="MSLLIQRLQSRRLCKNLQKEECRIANRTSPNSIYIEGKLSFKGYK FT MINIHCYVDTGAGLCLASKYIIPEELWENSPNTIQVTVANQEKVYLTKVCKNLNIYIAG FT EKFTIPTIYQQETGIDILIGNNFCRLYNPFIQWEDRIAFHLEQGTKQILVPKQRKAIKR FT GYQGFLETMKKESNTQPLPGTNITKEAVEDESNFIIDISRYQEIQNLLEKVCSENPIDP FT AKSKAWMKASIKLADPKSVVRVKPMVYSPEDRKEFEIQIKELLDLKVIEPSKSQHMSPA FT FLVEKEAEKRRGKKRMVVNYKKLNEVTIGDSHNLPNMQELITLLRGKTIFSSFDCKSGF FT WQVFLDQESQKLTAFTCPQGHFQWRVVPFGLKQAPSIFQRHMQNALRGLEEFCLVYVDD FT IIVFSDKEEEHYTHVLKVLKRIESLGIILSKKKTNLFKEKINFLGLEIDRGTHTPQNHI FT LEHLHNFPDRLEDKKQLQRFLGVLTYADSYIPKLAEKRKPLQVKLKKDQVWIWNQSDTD FT YVKKIKKGLVNFPKLYLPKKEDSLIIETDASDHFWGGVLKAQTTEGNELICRYSSGTFK FT PAELNYHSNEKELLAVKQVITKFSIYLTPVTFTVRTDNVNLLKRFMNTKITGDSKQGRL FT IRWQMWLSHYTFNVNHLKGEKNVLADYLTREYQQKRQQ" FT CDS 5459..6973 FT /codon_start=1 FT /product="inclusion body protein" FT /db_xref="InterPro:IPR009027" FT /db_xref="InterPro:IPR011320" FT /db_xref="InterPro:IPR037056" FT /db_xref="UniProtKB/TrEMBL:G3JWZ9" FT /protein_id="AEL30042.1" FT /translation="MEEELKALRFRKKVLEIELKSLCDKISLYEEMITTDISVQDPTGI FT KTEASPSQTVDGKDGKTNPLKPVALVKSKTVKTEPSPVQDETVKENGANNTSSPVANGS FT GKGTSNPLMADTLPKSEQEVSLKPTYSQAAMKPPRVGERYYVVYNGKGQGIYDDWAQAA FT KNIEKGTIVKKFSHYDEASISASSYTIKYGEKIPWKGMKPIVPKNQERRRLVDRIPQPE FT NSQQDNFPETSFDEFMNIWKKARRLSPESFNTEHLCSDDKASRSFLIIGPNADPDLTFR FT AFNAGLVKTIYPSNNLQEIGRFPEGFKKAIKKYRSKIAAAKDASIYIQCTSSIPDWEEG FT NSYQAYHLIEIGLSGKRDFNPSQEMVDSKDLLLQLSQVRVNGFIRILQKSQLIDGKTKV FT KINYAQEKVLIMSHYGAPISRNDVDILSSFEESIAHAKVDVGTSTKLLLCKQLKKLLAD FT NHKCSACESGASTSNNTSFTACSDSSSNNGEKDVSSDEQGSKDLPI" XX SQ Sequence 7949 BP; 3049 A; 1512 C; 1443 G; 1945 T; 0 other; atggatgttt caaaacataa ctcagagatt tcggaagacc actctgacaa caaccagttt 60 atctttaaac aagaagataa tctagggtat caagctgata ttatgatcca tcatgatatg 120 cttgaaaaaa tcaataggaa aaatctcagt ctatccaaag acgaaatttt tcatgattca 180 acttggaatc ttacaaaaaa gattttaagt cgaaaaaatg aaatagttta ttgtgtttcc 240 acccaggaaa tgtcagtaga tatttcagat gcctctggca aagtctattt accacttctc 300 acaaagaacg aagtaaataa gaaattatct aagttaaaac cagaacttag aaaaaagatt 360 actacggtac atcttggtgc tgtaaaaatc ttggtgacag ctcagttcca gtctggaatt 420 gatacaccta taaaaatggc cttaatagac aacaggatta agaccagaaa agactgcctc 480 ttaggagcag caaaaggcaa cttgtgctat ggtaaattca tgtttactgt atatcccaag 540 tttggagtaa gtctaagcac ccaacgcttt gaccaaatcc tcagctttat ccatgaattc 600 acaaggagtg atctaatgga aaaaggtgac aagatattct ctgtcactta cctcacggcc 660 tatgccctga ccaatagcat tcatagcatt gcttacaaaa atcagtctaa catagagatt 720 gatgagctct ttcaagaact tggaaatgtt caagaaagac ccttctgtga tatatcatca 780 caagaagaac aatggtccat taacattgac cataacaaaa ctaggatcaa tcagcctaga 840 cagagtatta gaaataatac catcacaatt ggtgaaagca gtaatgcacc agaccaatta 900 cttagacaaa tgtctaaaaa cgtagatagc ttaaggacta agctagaaca gatctgtgga 960 aatgagtgac aacatcacct caattcctca tatctacaaa aagaataggt acgtaaagct 1020 caaatcctta gagcctggta ctaagaacag aagatatacc tttgcgtctg acaacgacaa 1080 aagtaatatc agttccattg caaggcattg caataaccta aaccaaatag tagctagaaa 1140 ctggttaaaa ctcagtaagc taacttccta tttaggtcta gaaaaagatg aaagtgaacc 1200 gttctccaag aacaaagaaa ctttcaacaa attctttaaa gatctttcca aaacttttaa 1260 ggagggggga gatgataaag aaaaacaacc aaatttgtta ccagttttgg aagaactgtc 1320 taacagacta ggtaaattag acactaagat cccaaaagat cttgtgacta aatcagaatt 1380 ggaagttctg ataaaagact ttgataaaag actagagaaa atccaggata acataaaagc 1440 tatcatagga tgactaccct agccaccatc aaagaaatca gtgatgaaac tttatccctt 1500 gttaaggaac tcttaacaat gataaaacaa atcattgaca aaccagaaag ttctatccaa 1560 acagaactaa ctgagccaat cgcagcaaaa attatcaaag atatctccga taaaattgat 1620 aagtgcgaat gtgcagaaaa actcaaacag gagttaaaag ctggaaaaga tatgcaagta 1680 tccaaaccag aagatcctga aaaaccttcc acaaaaggat ttcagaacta ttcttatccc 1740 aactggggag taggaattga gagccttaga agctcaggaa accctaaagc gttagaatgg 1800 ccacccaaat gaccatagaa accagtaggt atcaccagac ccttcttgat aggcttgaag 1860 aaattcaact taaagaagag tacaaggaga tgacagaaat catccaactg ctatcactgc 1920 aggaagaaga aattgtggca gaattcaacc agaatgcaca actcagaaga atgtatttcc 1980 ccaacgaagt acaagaggaa aacttctatc aggtcacaga tgacgcagaa gttatccagg 2040 aatctgagga atcagtttca gaaccagaga ctgaaagaat ctcagaagaa gaagaagact 2100 tcaatgctaa ccctgtaagg tttagagatg acgggtcctt ctacatcagt gaagatgata 2160 tcccacctca taaataccga atttatgacg aagatactcc ttcatcatca aagaacgatt 2220 tctttgaaaa gaaaccaaat ttcccaccaa agaaatttgg aattccgact aatggtctca 2280 acaacaatat cctcgatatt gattgtatca cagacatgaa cattagaaaa caaatgattg 2340 atgactggtt aacaaaccta agtctaatca tacaatcaaa cccaacaagc tttgaacaag 2400 ctagacaggt cttgattctc gctgaacacc acagcagagg aaacgttcag aactttatca 2460 aaaagataaa atggaacgaa acattaagcg gatcaaaaat gcttgatgaa ataacccaag 2520 ggttatacac aatgttctta ggattggatt acatcagtaa ttctattaat gaacagcaaa 2580 agattagcca agaagctatc aacatcatga ccaaagccca gctttgtgat ttatgttatc 2640 ttgatcagtt cacatgcctg ttcgagaaaa atctaggaaa gctagatcca gaagaatttc 2700 ctaaatggac agaaatctat ctcagaaaga ttcctgttgt aggaaaccat gcatgggaag 2760 aatggaaaaa ggaaccctcg aatcctttaa agtattccat tgcatacgct acaaggctag 2820 tgaaaaagga aattgcaaga tactgtgatt tcaagaatac gacaaaacaa ctgaagaaat 2880 tcagaaagaa ctgttgtaac aagtacaaag agcccaatta cttaattggc tgtacagaaa 2940 cttcttgtaa gcccaattac aagaaaaaga aaagtactag gctcaaaccc aagtacaaaa 3000 agaaatgggt caaaaagaag aagaaattcc agcccggaaa atacttccaa aagaagccca 3060 aagggaatca aaagcccaaa acaaagtatt gccctcaagg caagaaaaaa tgtagatgtt 3120 ggatctgcgc agaagaaggc cattacgcca atgaatgtcc aagcagacag acaaaccagg 3180 ccaaagtaaa actcttacta gaagcccaac aggaagacta cattccaata gaagatccat 3240 atatggatta tcttacagta tatactatag aaatagtatc agatactgaa actgaagacg 3300 aagactcaga atgagtttgc taattcagag actacaaagc agaaggcttt gcaagaacct 3360 tcagaaagaa gaatgcagga ttgctaatag gaccagtcct aactcaatct acattgaagg 3420 aaagttatcc tttaagggat acaaaatgat caatatacat tgttatgttg acactggagc 3480 aggattatgc ttagcctcta agtatatcat tccagaagaa ttatgggaaa attctcccaa 3540 cacaattcag gttacagtgg ctaaccaaga aaaggtttac ctcacaaagg tatgcaaaaa 3600 ccttaacatt tatattgctg gagaaaagtt tacgatccca acaatatatc agcaggaaac 3660 aggaattgac atcctcatag gaaataattt ctgtagactc tacaaccctt tcattcaatg 3720 ggaagataga attgcatttc atttagaaca aggaaccaaa caaatcctag ttcctaaaca 3780 aagaaaagca ataaaaagag gttatcaagg attccttgaa accatgaaga aagagtcaaa 3840 cactcaacca ctgccaggta cgaacatcac caaagaagca gtagaagatg aaagcaactt 3900 catcatagat atctcaagat atcaagagat tcaaaactta cttgaaaaag tttgttctga 3960 aaaccctatt gatccagcca aatccaaagc gtggatgaaa gcatcaataa aactagctga 4020 tccaaaatca gtagtcagag tcaaacctat ggtttactca ccagaagaca gaaaagagtt 4080 tgagattcaa attaaggaac tccttgacct aaaagtcata gaacccagca aatctcaaca 4140 catgtcaccc gcctttttgg ttgaaaagga agcggaaaaa agaagaggga aaaagagaat 4200 ggtcgttaac tacaaaaagt taaacgaagt caccattggt gattctcaca accttcccaa 4260 catgcaagag ttaatcactc tgctcagagg aaaaaccatc tttagcagct tcgactgtaa 4320 aagtgggttt tggcaggtct ttttagatca agaatcgcag aaactaactg cattcacatg 4380 tcctcaagga cactttcaat ggagagttgt acccttcggg ttaaaacagg ctccaagcat 4440 cttccaaaga cacatgcaaa atgcattaag aggtcttgaa gaattttgtc tagtatacgt 4500 tgatgatatc attgtatttt cagacaaaga agaagaacat tacactcatg ttcttaaagt 4560 cttaaagaga atagaaagct taggcataat actctctaag aaaaagacta atctctttaa 4620 agagaaaatt aatttccttg gattagaaat tgatagagga acccatactc ctcaaaacca 4680 tattttggaa catcttcaca attttcctga caggttagaa gacaagaagc agctccaaag 4740 atttctcgga gttcttactt atgcggattc atacatccca aagcttgctg aaaagcgaaa 4800 acctctacag gtaaaactga agaaagatca ggtatggata tggaatcagt ctgatactga 4860 ttacgtaaag aagataaaaa aaggtttagt taattttcct aaattatatc ttcctaaaaa 4920 agaagacagt ctaatcattg aaactgacgc ttctgatcac ttctggggtg gtgttttaaa 4980 agcacaaacc actgaaggaa atgaattaat ttgcaggtac agttcgggaa cgttcaagcc 5040 agcagaatta aattaccaca gtaatgagaa agaattactc gcggtaaaac aggtaattac 5100 caagttcagt atttatctaa ctcctgttac ttttacagta aggacggata atgtaaatct 5160 tctaaagaga tttatgaaca caaaaattac tggagacagt aaacaaggcc gattaattcg 5220 atggcaaatg tggctgtccc actacacatt taatgtcaat catctaaaag gtgagaaaaa 5280 tgtgttggct gattatctca ccagagaata ccagcaaaaa cgtcagcaat gacgacagat 5340 agcatattcc aagtgctata aatgaaagcc ttgatcactc aagttcttca caccaagaag 5400 aaaataaatc ttcttttcaa ataaggggga gtttcccact taaaaatcac aactccaaat 5460 ggaggaagaa ctcaaagcat tacgctttcg aaaaaaggtt ctagaaatag aactcaagtc 5520 actatgtgac aagatcagtc tctatgaaga gatgataaca actgatattt cagttcagga 5580 tcccactggg ataaaaactg aagctagtcc atcacaaacg gtagatggta aagacggtaa 5640 aacaaatccg ttgaaacctg ttgctttggt aaaaagcaaa acggttaaga ctgaaccaag 5700 tcctgtacag gatgaaacgg tcaaagaaaa tggtgctaac aacacctcta gccctgtagc 5760 aaacggctca ggtaaaggca catcaaatcc gttgatggct gacactttgc caaaaagtga 5820 gcaggaagtt tctctgaaac ctacctattc tcaggcggca atgaaacctc caagagttgg 5880 tgaaagatac tacgttgtct acaacggcaa aggacaaggt atctacgatg attgggctca 5940 agcagctaag aacatcgaaa agggaactat tgtcaaaaag ttctcccatt atgatgaagc 6000 atccatctct gcatcatcat acaccatcaa gtatggagaa aagattccgt ggaaagggat 6060 gaaacccatt gttccaaaga atcaagaaag aagacggttg gtcgacagaa ttccccaacc 6120 agaaaactct caacaggata attttcctga aacatccttt gatgagttca tgaacatatg 6180 gaagaaagcc agaagactct ctccagaatc gttcaacaca gagcatttgt gctcagatga 6240 taaagcatca agaagctttc tcataatcgg tcctaatgcc gatccagact tgacattcag 6300 agcattcaat gcaggactag tcaagaccat ctatccatct aacaatcttc aagaaattgg 6360 aagattccca gaaggattca aaaaagcaat caaaaagtac aggtcaaaga ttgcagcagc 6420 caaggatgca tccatttaca tccagtgcac atcctctatt ccagattggg aagaaggaaa 6480 cagctaccag gcatatcacc tgatagaaat aggtctctcc ggcaagaggg attttaaccc 6540 atcacaagaa atggtggaca gtaaggatct tttactccag ttatctcaag ttagggtaaa 6600 tggtttcatc agaatcctcc aaaaatccca gttaatcgac gggaagacaa aagtcaagat 6660 caattacgca caggaaaaag tattgatcat gagtcactac ggagcaccaa tctccagaaa 6720 tgatgtcgac atcttatctt cctttgaaga aagcattgca catgccaaag ttgatgtagg 6780 gacatctaca aaattattgc tttgcaaaca gctgaagaaa ttattggccg acaaccataa 6840 atgctcagca tgtgaaagtg gggcctccac tagcaataat acaagcttta cagcttgcag 6900 tgactcatcc tccaataatg gagaaaaaga cgtcagcagt gacgaacaag ggtcgaagga 6960 cttgcctata taagagcatt ctcccctcag ttgaagatca tcgaaagttg gagcaataaa 7020 ctctctcttc aacaaatcta tcttttgtct agaatcatgt gtgagtagta acccatatag 7080 gggtataatg tagtagaata agaaggtgcc ctcgggcact agtgtgtgtt tgtatgatgt 7140 attttccata tatataagag caaatctttt tcatgtccct gaggcaaagt atgctatccg 7200 accaaaaact tcatatcacc aacagcctaa taccttcttc aaagtctatc ctggactatc 7260 gttattcgct tagtatgctg aacttttagg caggtggccg tttgtgttcg ttgcagaaaa 7320 ggaagatagt ggagaaaaca ggaaaagaag gctagatagc agtgaaaaag aagaacaggt 7380 agggagagag aaacgccttg cagaggatgc agctggaaag gtaaaatttt gtttaatata 7440 ttttggaata catcaagatt acattcacaa ctagttctct tcaattctaa acattatacg 7500 cctatacatt taaaaacaca gaaaaactta agatttttat ctaaaaacaa atgatttcga 7560 tcaaatacga gatgtcttta catcaaatta tactcagaaa tgagttaaaa caaaccaaag 7620 atgaacatca gttcataatg gatagaatat cctcaatcag attccttggt atcaacaaga 7680 aatcaaagaa aagcttacta aaagagctta catctcaaag agaagaactg cataagcaga 7740 taactctcct tgaatctcag attaatatca cgcaatgata attaatcaga atattaccat 7800 caagaataag atcataactt gttctggtaa ggaatttgct ttagataata tcaacagcat 7860 gagttccaaa atactccgcc ccaaaaattg gtatcagagc caagtgctca aaattaaaat 7920 tgtttaaaca tttattaggt aaaactaaa 7949 //