ID JN019815; SV 1; linear; genomic RNA; STD; VRL; 2880 BP. XX AC JN019815; XX DT 12-DEC-2011 (Rel. 111, Created) DT 24-FEB-2012 (Rel. 111, Last updated, Version 2) XX DE Garlic virus D isolate Bate1 TGB1 gene, partial cds; and TGB2, 40 kDa DE protein, coat protein, and NAPB genes, complete cds. XX KW . XX OS Garlic virus D OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Allexivirus. XX RN [1] RP 1-2880 RX DOI; 10.1007/s00705-011-1166-x. RX PUBMED; 22075920. RA Wylie S.J., Luo H., Li H., Jones M.G.; RT "Multiple polyadenylated RNA viruses detected in pooled cultivated and wild RT plant samples"; RL Arch. Virol. 157(2):271-284(2012). XX RN [2] RP 1-2880 RA Wylie S.J.; RT ; RL Submitted (25-MAY-2011) to the INSDC. RL Plant Virus Group, WA State Agricultural Biotechnology Centre, Murdoch RL University, South Street, Perth, WA 6150, Australia XX DR MD5; 988da97776d8d233b40e0b35de839b37. XX FH Key Location/Qualifiers FH FT source 1..2880 FT /organism="Garlic virus D" FT /host="Allium sativum" FT /isolate="Bate1" FT /mol_type="genomic RNA" FT /country="Australia" FT /collected_by="S. Wylie" FT /collection_date="01-Nov-2010" FT /db_xref="taxon:12430" FT CDS <1..71 FT /codon_start=3 FT /product="TGB1" FT /db_xref="UniProtKB/TrEMBL:G9F801" FT /protein_id="AEV51817.1" FT /translation="ATRAVSRLNLVTDTHLPQLANC" FT CDS 85..396 FT /codon_start=1 FT /product="TGB2" FT /db_xref="GOA:G9F802" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:G9F802" FT /protein_id="AEV51818.1" FT /translation="MSFAPPPDYSKVYITLAGGTAAGILIYTLRSNQLPHVGDNTHNLP FT HGGRYCDGNKQIHYYRPNSGGQHGGSFIPLFFILILSLAILLLSRPRRRLCVRCSEPH" FT CDS 507..1601 FT /codon_start=1 FT /product="40 kDa protein" FT /db_xref="InterPro:IPR008398" FT /db_xref="UniProtKB/TrEMBL:G9F803" FT /protein_id="AEV51819.1" FT /translation="MVIVTTLHIDRARELIITNTNSCRDTLSNQIQALGLELQTIVPRL FT DNFYLATTTSWQLIRERLCDTSSSPNANLDTAPSEARSGTPNTPVTNLQRTFFSNANIA FT LDATRTLLGYVPPARYDVPPITLPLDELYGQLHALHQNSLEWLTHINHNVDSILDMLNP FT SKLPSQDTTLSRLGDMLATLTGKIDGIYSTLQSSRTDPNIPSSSRPASRLEVVEHSLER FT LHVKIDELTSAVTQARDHPHTTTIPDVPRPYAGARDLPAYQAQHPTRPCRAYGTVLFDD FT KTLRIPMDIIGRPVSTALKIELHLTANDQTTVVLYKIYDDGYLLLSDDIETAHKLQHRL FT SDCLALLHQKCPNFIYKIKGHGLC" FT CDS 1650..2402 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:G9F804" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:G9F804" FT /protein_id="AEV51820.1" FT /translation="MNEQGNTSTQPPRGTINPPGPPQPNVSAFGQGQTRLSGGRDPTNA FT NPVTNEQDDLMPAVTEFANLANDVESNSIASRTTIREILDMLQATRQGATPRDLFSLAW FT TCYHNGSSRFVTLSTKAPCGMPHSELKDLVENFCTLRQFCGFYAKACYVTGKQQKKPPA FT SWSRKGYQDDAKFAGFDFFNAVLSDFSPAPPGGMRFKPTDAEILAHSMNAKMSIVESRR FT TSNMISTRADLLAQQQIHEQPKPPMITF" FT CDS 2402..2788 FT /codon_start=1 FT /product="NAPB" FT /db_xref="InterPro:IPR008891" FT /db_xref="UniProtKB/TrEMBL:G9F805" FT /protein_id="AEV51821.1" FT /translation="MHPHDFNLLCCLHFSQPSLPKDLKDLLFSRCVDCCKLIRKSNQNK FT PFQGVSKCAKRRRAKRYNRCFDCGAFLVDEHRCKVFVSRAQSDVLAVIREGPAKLYAER FT SYRPNSDAAQLIEDDILYIKALNL" XX SQ Sequence 2880 BP; 804 A; 798 C; 608 G; 670 T; 0 other; cagccactcg agccgtcagc cgcctcaacc tcgtaacgga cactcacctg ccccagctag 60 ccaattgctg acaactacag gtagatgagt tttgcccctc ctccagacta ctctaaggta 120 tacatcacac ttgcaggagg taccgctgcc ggaatattga tttacaccct taggtccaac 180 caattaccgc acgtgggaga taatacacac aacctgccac acggcggacg ttattgtgac 240 ggcaataagc aaatccatta ctacaggccc aactctggcg gccaacacgg aggatcgttc 300 atccctttgt tcttcatact catcctctca ttggctatat tactgcttag ccgtcctcgc 360 cgccgccttt gcgtacgctg ctctgaacct cattaacgga ccacaacgcg gttgcataat 420 cacagtcaca ggtgcttcag tgcaagtgtc taactgccct cttgagcacg tgcccaccat 480 tgtagaatct tttagttgga gcaagcatgg ttattgtaac tactctccac atagaccggg 540 cacgtgaact gatcatcaca aatacaaata gttgcagaga tacattgagc aaccaaatac 600 aggcattggg gctggaattg caaaccattg ttcccaggtt ggacaatttc tacttagcaa 660 ctaccaccag ctggcagctc atccgcgagc gtctgtgtga caccagttcg agtcctaacg 720 cgaatcttga cacagcacct tcagaagcga ggtcagggac acctaatact cccgtcacaa 780 atctccaacg cactttcttc tcaaatgcga atattgcgtt ggatgccacc cgcacgctac 840 tgggatacgt tcctcctgct agatacgatg tgccgccgat cacgctgcca ttggacgaat 900 tgtatgggca actccacgcc ttacaccaaa attccttaga gtggctcaca catattaatc 960 acaatgtgga ctcaatcctt gatatgctca acccgagcaa actgccatca caagatacga 1020 cactgagtcg gttaggtgac atgctagcca ctctaactgg gaaaattgac ggcatatact 1080 caacactaca atcatcaagg actgacccca acatcccaag ctcttcaaga cctgctagca 1140 ggctcgaagt cgttgagcat agtctggagc gtttacacgt gaaaattgac gaactcactt 1200 ctgcggtgac acaagcgcgc gatcatcctc acaccacgac aataccagat gtgccacgac 1260 cttacgccgg cgcacgtgat ctcccagcct accaagctca acacccaacg cgaccatgta 1320 gagcatacgg caccgtgctt ttcgacgaca agactttaag aatacccatg gacatcattg 1380 gaagaccagt atcgacggcc ttgaaaattg agcttcacct caccgctaat gaccaaacta 1440 cggtggtatt gtacaaaatc tacgatgatg gttacctttt actatccgac gacatcgaga 1500 cagcgcacaa actgcaacat cgcttaagtg actgcctcgc actattgcat cagaagtgtc 1560 ccaactttat ctacaagata aaggggcatg gtttatgtta agttagttag aaggttgaat 1620 caagcaagtg aagcgtgtta gctgcgagaa tgaatgaaca aggaaacacg agcacccaac 1680 caccacgagg cacgattaac ccgcctggac caccacagcc caatgtgtca gctttcggcc 1740 aaggtcaaac taggctttca ggaggccgtg accccacaaa tgccaaccca gtcaccaacg 1800 aacaggatga cctgatgccc gccgtaaccg aattcgcaaa tttggctaat gatgttgaat 1860 ctaactcaat agcttcaagg acgactataa gagagatcct ggatatgctg caagcgacta 1920 ggcagggagc tacaccgagg gacctctttt ctttagcttg gacgtgctac cacaacggct 1980 cctcacgctt tgttacactg agcacaaaag caccttgcgg aatgccccat tcggaactca 2040 aagacctggt cgagaatttt tgcacgctga gacaattctg tgggttctac gccaaagcat 2100 gctacgtcac gggcaagcag cagaagaaac caccggctag ttggtccaga aaaggctatc 2160 aagatgacgc aaaatttgca gggtttgact tctttaatgc ggtgcttagt gacttttccc 2220 ctgccccacc tggaggaatg aggtttaaac ccactgacgc cgaaattctt gctcattcca 2280 tgaacgctaa gatgtcaatc gtggagtccc gtcggaccag caacatgatt tccacacgcg 2340 ctgacctcct tgcccaacaa cagatacacg aacagcccaa gcctccaatg atcacatttt 2400 gatgcatcca cacgacttta acttgctttg ttgcctgcac ttctcacaac cttctcttcc 2460 aaaagacctc aaagacctcc tcttctcacg ctgtgtagat tgttgtaaat taatacgtaa 2520 gagtaaccag aataagcctt tccaaggcgt ttctaagtgt gctaaacgcc gccgggcaaa 2580 gcgctataac cgatgctttg actgcggagc tttcttagta gatgagcata gatgtaaagt 2640 atttgtatcg agagctcagt cagatgtgtt agctgtcata cgtgagggac ccgctaagct 2700 atatgctgaa aggtcctata ggccaaattc tgacgccgca caactgattg aggatgacat 2760 actatacatt aaggctctta acttataagg cttgacccaa gcctcccacc gggtttacag 2820 ggttctggac gtgaacaaag acactcacga ctgttgatat tgctaaactt accttgcaac 2880 //