ID JN019814; SV 1; linear; genomic RNA; STD; VRL; 7708 BP. XX AC JN019814; XX DT 12-DEC-2011 (Rel. 111, Created) DT 24-FEB-2012 (Rel. 111, Last updated, Version 2) XX DE Garlic virus C isolate Bate1 replicase gene, partial cds; and TGB1, TGB2, DE 40 kDa protein, coat protein, and NAPB genes, complete cds. XX KW . XX OS Garlic virus C OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Allexivirus. XX RN [1] RP 1-7708 RX DOI; 10.1007/s00705-011-1166-x. RX PUBMED; 22075920. RA Wylie S.J., Luo H., Li H., Jones M.G.; RT "Multiple polyadenylated RNA viruses detected in pooled cultivated and wild RT plant samples"; RL Arch. Virol. 157(2):271-284(2012). XX RN [2] RP 1-7708 RA Wylie S.J.; RT ; RL Submitted (25-MAY-2011) to the INSDC. RL Plant Virus Group, WA State Agricultural Biotechnology Centre, Murdoch RL University, South Street, Perth, WA 6150, Australia XX DR MD5; 58433328ef91bf1a5c1121b03ca38afe. XX FH Key Location/Qualifiers FH FT source 1..7708 FT /organism="Garlic virus C" FT /host="Allium sativum" FT /isolate="Bate1" FT /mol_type="genomic RNA" FT /country="Australia" FT /collected_by="S. Wylie" FT /collection_date="01-Nov-2010" FT /db_xref="taxon:12431" FT CDS <1..4061 FT /codon_start=3 FT /product="replicase" FT /db_xref="GOA:G9F7Z5" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:G9F7Z5" FT /protein_id="AEV51816.1" FT /translation="EAIHKLPSLFPEIYKLEYYDKHFAYMPGGHGGGAYIHSYGTLKWL FT STAQIGSGSNHLSIEKIETKAAHHIVVIQRRRPELPWPLPPVWVFHASDYVRLPEIFYP FT KEANVQRPYPHVFIKRLQLYCFSVKAVSLRDIFAKIRQVLPTEELARFSTADLIRLANY FT LLFITGMQQTSDYQSPLMESLLGKICLSIRARIREFFQDLMGKSSYAALLTVTDVRPVY FT FTTKPVRRPVCGEQWFKEEEVEEDRVAPSPTGYQRPSPDDLDLLAEFEQQEILKAQDDQ FT RNHQVEAYRKNHQQNMVDPQTQTSPIYDNERIDERSNVHKSAPTDEQNSPGRAREDQSD FT STSDGHVTDWSDSESDTDSHDQQSQTADDLLFDEADLPELEEVEPELEETQTEPSPAPE FT ESADLSACEDVSFNESVEPCAESAAELRGSDKLTKVKLEPLDEETVEILKIHGFTNLKP FT QHDGQFQISPVFYNRQARHLPHYDGIVTTTQSHFIDMARALKRSCYRYRLDAKRATAFM FT SDVKNNLTGLVLPKLDRDLLASWVALAENAKRSVGLIVIHGAGGAGKSRALQELLRHEK FT LDNNEVNIVVPTINLAADWKRKLPSMDPRRIMTFEKACEREGKSIVIMDDYGKLPAGYI FT DAYLAIKFNVELVILTGDQRQSVFHNDKKDSQIALLSSNTDYYKRYCDYYLNATHRQPQ FT RLANPIKVHAQREVGGAIKHATLIPPNAMTLVPAFRSQSLLTDLGRQAMTYAGCQGLTL FT PHLTIVLDKDTPLCSDEVLYTALSRASETITFVNTHSNNKEFLDKLDSTPYLKTLISGV FT REDEEAGREQPPPEPVVREGPTKTHIPISNNNVQLENKIETMEDKDTRELWSGEEKTNL FT MQTQDPVIQLFPHQQAKDEALFKITINERIRLATPEANKRALTETLNAGDLLFEAYASF FT MNVPRETQAFDKRLWAHCRQLALRTYLSKPTANLQQGAKRQDPDFPDNAIALFNKSQWV FT KKLEKVGCRFKAGQTISAFKQSTVLLTTTMALYLRKKREGHQPDNVFIMCEKTPEQFNS FT FVLTNWDFSRPNYTSDYTQYDQSQDAAFLNFELRKARHFGVPDEVVDFYAFIKTHAKTF FT LGNLAVMRLSGEGPTFDANTECNIAYDALRFQLDHTVKACYAGDDLVRDKACEERPGWK FT YSEPLFSLKAKPLVTNKPDFCGWRLTKYGIVKSPVQLYQSLQLALKLGKVEEVKRSYAI FT DYLFAYRLGDQLYDIFDEDEMAKHQLVTRTLIKKGMQPPSSGEHLPTFHVTSDRLIRDP FT RALKLSTFESDRIMLPLEIIDDHFTASNKADRREMTEESNRRSTEASASSDHTGVNATL FT TDLFPDAFR" FT CDS 4159..4875 FT /codon_start=1 FT /product="TGB1" FT /db_xref="GOA:G9F7Z6" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:G9F7Z6" FT /protein_id="AEV51811.1" FT /translation="MKIALLLQLLDNAGFVRTNLTPADTIVVHGVPGCGKSTLIKELIV FT GQSTVAYTLGVPYGRSLAHAGVKHISQVDNKVSDFETRILDEYQLGTEEHVKNFNVLFG FT DPFQGKFQLPAHYTKRLSHRVPRQICQYLKSLDYDIIGEREGELNFPPIFAANATGPVG FT TVLHLGPLSRQLTRTFGVCSKDPIAVQGLEFQELTLVYHSSELPSNRELFFVAVTRARR FT LLNVLTDAKPPVDLLR" FT CDS 4890..5201 FT /codon_start=1 FT /product="TGB2" FT /db_xref="GOA:G9F7Z7" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:G9F7Z7" FT /protein_id="AEV51812.1" FT /translation="MSFTPPPDNTKVYLTLAIGASAGILIYTLRTNQLAHVGDNTHHLP FT HGGRYCDGNKRIHYNGPQTGFFHIPSFLPFVAAIALTVVIHILSCNRRRVCVRCSESH" FT CDS 5309..6409 FT /codon_start=1 FT /product="40 kDa protein" FT /db_xref="InterPro:IPR008398" FT /db_xref="UniProtKB/TrEMBL:G9F7Z8" FT /protein_id="AEV51813.1" FT /translation="MTIATTSYIDEIRERINSCVNAARNTVCQNINIVQANIEKNIENT FT SSSIINHFTAWCESIGGQIGTLLTTVERVDESIHHLEHVLALRIQPQAPQLAPPPQRIL FT FTNANAALEATRGLIAHVPPIRYALPPTTLPLDELYGQLHALHQNSLEWLTHIGSDTDQ FT LLLDLRAFANTTAANHSQVANHVTSIRDELHALRGLPGLVNTLLKQHEANAQTLNTLMK FT DVAALKTLVMHSQTCPPNQTSNSTTSSGDKTTAHQISDLEPYQAQHPKTRCRTYGTIIY FT NGSSLHMPMDILGKPASTALQLHVSVKLSAQGTSVTYRLADNGALLLSDEIVVPNKLTE FT PLSDALSLLHSKCRNFIYTNKGNSLC" FT CDS 6429..7208 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:G9F7Z9" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:G9F7Z9" FT /protein_id="AEV51814.1" FT /translation="MNKDDLSDDLVSAAMTDSSSQGFNPSTSAQGTRPGVVSGSNPPAP FT SRNPRPSSTQGGTTVNNELLPSESELEAVANDVTSNSVATQSTIREILDLLRARRPSAN FT PKDLFSLAWACYHNGSSRYTNLATDAPCGMSHAELKDLVEEFCTLRQFCGFYAKTCYVT FT GKQQNKPPANWARKGFQDDSKFAAFDFFNAVSSDSAPNPPGGMRFKPTQAEILGHSLNA FT KMSIIESRKSSNMVSTRADVIAQQQIHEPPKPLMLTF" FT CDS 7224..7610 FT /codon_start=1 FT /product="NAPB" FT /db_xref="InterPro:IPR008891" FT /db_xref="UniProtKB/TrEMBL:G9F800" FT /protein_id="AEV51815.1" FT /translation="MHPYNLNLLCCLHFSKPTLPSELRLYIYSLATLNLKLGRKMFQNK FT PFQGTSKCAARRRAKRYNRCFDCGSYLQNNHVCKQFQTRASTSCFSVIHEGPAKLYAEG FT SFRRDSFAEQLILNDLELIKLYNN" XX SQ Sequence 7708 BP; 2237 A; 1986 C; 1689 G; 1796 T; 0 other; ttgaagccat ccacaaactg cccagtcttt tcccagaaat ttacaagctt gaatattatg 60 ataaacactt cgcttatatg cctggaggac atggaggagg agcctacatc cactcgtacg 120 gcactctcaa atggttgagc actgctcaga ttggttcggg atcaaaccac ctgagcattg 180 aaaagattga gacgaaagct gcacaccaca tcgtggtcat ccaacgcagg agaccggagt 240 taccatggcc attaccgcct gtgtgggtat ttcatgcatc tgactacgtt agactacccg 300 aaatcttcta tcctaaagaa gctaacgtgc aaagacccta tccacatgtg tttataaaac 360 gcctgcaact ctattgcttt tctgtcaaag cagtttcatt gcgcgacatc ttcgcgaaaa 420 ttcgacaggt tttaccaacc gaggaactcg ctcggttctc cacagctgac ttaatacggt 480 tagcaaacta cctactcttc ataactggta tgcagcagac cagtgactat caatccccgc 540 tgatggaaag cttgcttgga aaaatatgct tgtcgatacg agcaagaatc cgagagttct 600 tccaggattt gatgggcaaa tcgtcttacg ctgcattact gacagtcaca gacgtgcgcc 660 ccgtatactt cacaaccaaa ccggtccgta gaccagtttg cggggagcaa tggttcaagg 720 aggaggaagt tgaagaggac cgagtcgcgc cttcacccac tggttatcaa agaccatcac 780 ctgacgacct agacttgctg gcagaatttg agcaacagga gatcctgaaa gctcaagatg 840 accaacgcaa ccatcaagtt gaagcatatc gcaaaaatca tcaacaaaat atggttgacc 900 cacagaccca aacctctcca atatatgata acgaacgaat tgatgagagg tccaacgtgc 960 acaaatctgc acccaccgac gaacaaaatt cccctggcag agctcgggaa gatcagagtg 1020 acagcacgtc cgatgggcac gttaccgact ggagcgacag tgagagtgac acggatagcc 1080 acgaccagca atcacaaact gcagatgacc tcctttttga cgaagctgat ttacctgaat 1140 tggaggaggt tgaacctgag ttggaagaaa cgcaaacgga gccgagtcca gcacctgagg 1200 agagcgcaga cttgagtgca tgtgaagatg tttcctttaa cgaatccgtg gaaccatgtg 1260 cagagtcggc agcagaactg cgaggatctg acaaattaac aaaagtcaag ttggaaccac 1320 tggatgagga gacagttgag atactcaaaa tccatggctt cactaatctt aagccacagc 1380 atgatggcca gttccaaatt tccccggtgt tctacaatcg gcaagcaagg cacttgccac 1440 actatgatgg aatagtcacc acaacccagt cgcacttcat agacatggcg agagcactga 1500 aacggagttg ctaccgttat agattagatg caaagcgggc cacggcattc atgtcagacg 1560 ttaagaacaa tttaactggc ttggttttgc cgaaactcga cagggatttg ctggcatcat 1620 gggtggccct agcggagaat gccaaaagga gtgttgggct catcgtgatc cacggtgcag 1680 gcggagcagg gaaaagtagg gcactgcaag agctgctaag gcacgaaaaa ttggataaca 1740 atgaagtcaa catcgtggtg cccaccatca atctcgccgc agactggaag aggaaactgc 1800 caagcatgga ccctcggcgg atcatgacat ttgagaaagc gtgtgaacga gaaggcaaat 1860 caatcgtcat aatggatgac tatgggaaat tgcctgcggg gtatattgac gcctacctgg 1920 ccattaagtt caacgttgag cttgtgattc tcactggcga ccaaaggcaa tctgtcttcc 1980 ataatgacaa gaaggactct cagatagcgt tgctcagctc taatacagac tattacaaac 2040 gatactgtga ctactatctc aacgcgacgc atcgacagcc ccaacgcctc gccaacccca 2100 ttaaagttca cgcgcaaagg gaagtaggtg gagcgattaa gcatgccacc ctcataccac 2160 ctaacgctat gacacttgta ccagctttcc gtagtcagtc actactgact gatctgggtc 2220 gccaggcgat gacctatgct ggttgccaag gacttacact tccccatctt accattgtgt 2280 tggacaagga tacgcctttg tgctccgacg aagtattata cacggcatta tcaagggcgt 2340 cggaaacaat tacattcgtc aacacccact ccaataacaa agagttccta gacaagcttg 2400 actcgacgcc gtatcttaag actctaatat ctggggtgcg ggaggatgaa gaagctggcc 2460 gagaacaacc tcccccagag ccagttgtac gcgaagggcc cacaaaaact cacatcccaa 2520 tctctaataa taatgttcag cttgaaaaca aaatagagac catggaagat aaagacactc 2580 gcgaactctg gtcaggggag gagaaaacaa acctgatgca gacacaagat ccggtgatac 2640 agctctttcc ccaccaacaa gctaaggacg aagccctctt caaaatcact ataaacgagc 2700 gaattcgttt agccactcct gaagctaata agagagcgct cacggagacc ctcaacgcag 2760 gagatttgct ctttgaggca tacgcaagtt tcatgaacgt gccccgggaa actcaagctt 2820 tcgataaacg tttgtgggca cattgtaggc aacttgctct ccgtacctat ctctccaaac 2880 caactgcgaa tcttcaacaa ggagcaaaac gacaggaccc agacttccca gataatgcaa 2940 ttgcactctt caacaaatca caatgggtca agaaattgga gaaggtaggg tgcagattca 3000 aagccgggca aaccatatcg gcattcaagc aatcgacggt gctgcttacc acaactatgg 3060 ccctttacct gcggaagaag agggaaggtc accagcccga caatgttttc ataatgtgtg 3120 agaagacgcc tgagcagttt aattcgttcg tgctcaccaa ttgggacttc agcagaccca 3180 attatacatc cgactatacg caatacgatc aatctcaaga cgcagcgttc ctcaactttg 3240 aattgaggaa agcaaggcat tttggagtgc ctgacgaagt ggtagatttc tacgctttca 3300 tcaaaacgca cgctaaaaca tttctgggta atctcgccgt aatgagattg agtggggaag 3360 ggccaacttt cgatgctaac acagagtgca acatcgctta cgatgccctg agatttcagc 3420 tggaccatac agtcaaagcc tgttatgcgg gtgacgatct ggttcgtgat aaggcctgtg 3480 aagaacggcc cggttggaaa tattccgaac ctttgttctc acttaaggct aagcctctgg 3540 tcacgaataa gccagatttc tgtggatggc ggctcacgaa gtatggaata gtgaaatctc 3600 cggtgcaact gtatcaatca ctgcagttgg cgttgaagct cggtaaagtg gaagaggtga 3660 aacgaagcta tgccattgac tacctattcg cataccgcct gggtgaccaa ctgtacgaca 3720 tatttgacga ggacgaaatg gccaaacacc aactcgtcac tagaacttta attaagaaag 3780 ggatgcagcc tccaagctca ggggagcacc tacctacctt ccacgtaact tctgataggc 3840 tcatcagaga ccctagggct ctcaaactgt caactttcga gtctgacaga atcatgctac 3900 cccttgaaat aattgacgat cactttaccg caagtaacaa ggccgatcgt agggagatga 3960 ctgaagagag caataggcga tctacggaag ccagtgcgtc gtcagaccat acgggtgtga 4020 atgctactct cacagaccta ttccccgacg cattccgata gagtaggtat gggtatatag 4080 cttacatact aactgctaat ttaatcatgt aaattaagca accatatgca taggttaggt 4140 tttccagctt agttcgaaat gaagattgct ctgctattac aattgttaga taacgcgggt 4200 ttcgtcagga ccaatttaac gccagcagac accatagttg tgcacggagt accaggttgc 4260 ggcaaatcaa ccttaatcaa ggaacttatc gtgggacaat ccacggttgc ctatacttta 4320 ggtgtacctt acggtcgctc acttgcccac gctggtgtta aacacatctc acaagttgat 4380 aacaaggtta gcgactttga aactaggatt ctcgacgagt accaactcgg aaccgaagag 4440 cacgtcaaga acttcaacgt tctgttcggc gaccccttcc aaggcaagtt tcagctgcca 4500 gcccattaca ccaagagact ctcgcatcgt gttccgcgtc aaatctgtca gtacttgaaa 4560 tcgctagact acgacatcat tggagaacgt gagggagagt tgaactttcc tccaatcttt 4620 gccgcgaacg ctaccggtcc cgtcggcacc gttctgcacc tgggtccctt atcccgccaa 4680 ttaacgagaa catttggagt ttgctcaaaa gatcccatag cagtgcaagg ccttgagttt 4740 caggaactaa ccctagttta tcactcttct gagcttccat ccaatcgtga acttttcttc 4800 gtggcagtca cacgcgctcg acgtttgctt aacgtgctca ccgacgctaa accacctgtt 4860 gatctccttc gatagcatca gacaactcta tgagcttcac tcccccaccg gacaatacca 4920 aagtttattt aacattagct attggcgcat ctgcgggtat actcatctac actcttagaa 4980 ccaaccaact tgcgcacgtg ggagacaaca cacatcactt accacacgga gggcgatact 5040 gcgacggtaa caaaagaatt cattacaacg gtccacaaac tggattcttc cacatccctt 5100 ccttcctacc gtttgtggca gcaattgcac tcacagtggt tattcatatt cttagctgta 5160 accgccgccg tgtttgtgta cgctgctctg agtctcatta gtggtcagtc agggtgcatc 5220 gttaccatca ccggatccgc cgtgcaaatt accaactgcc ctttagaaca tataccagac 5280 gtggtaaaat ctttttcctg gagtgctaat gaccattgcg acaacttcct acattgacga 5340 aattcgtgaa cgtattaata gttgcgtcaa tgctgcccgc aacactgtat gccaaaacat 5400 taacattgtg caagccaaca ttgagaaaaa tattgagaac acatcaagca gcatcattaa 5460 ccacttcacc gcgtggtgtg aatcaattgg cggccagatt ggaactttac tcacaactgt 5520 ggaacgtgtt gatgagagta tccatcatct ggaacacgtg cttgccctga gaatccaacc 5580 acaagccccg caactagccc cgccgccaca gaggatactg ttcacaaacg ccaatgcagc 5640 attggaagcg acacggggcc ttattgcaca cgtaccgccg attaggtatg ccctaccacc 5700 aactacgcta ccacttgatg aactttatgg ccaactacac gctttgcacc agaactcctt 5760 agaatggctc acccacatcg gaagcgacac ggaccagcta ctcctagact taagagcatt 5820 tgcaaacact actgctgcaa atcacagcca ggtcgcaaat catgtcacaa gcattcgaga 5880 tgagttacac gccctccgag gtctgcccgg tcttgtgaac accctgctca aacaacacga 5940 ggctaacgcc caaactctca acaccctgat gaaggatgtc gccgccctta aaacgttggt 6000 tatgcacagc caaacttgcc cgccgaacca aacatccaac agcacaacct ccagtgggga 6060 caagaccacg gcacaccaga taagtgattt ggaaccatac caagctcaac accccaaaac 6120 gcgttgccgg acttatggaa ccataattta caacgggtcg agtctccata tgccgatgga 6180 tattttgggc aaaccagcta gcacggcctt gcaactgcat gtttcagtta aactttcagc 6240 ccaaggaact agcgtaacct atagactagc tgataatggg gcactattgc tgagcgacga 6300 gatcgtagta ccgaataaac tgaccgaacc tcttagtgac gcactctctt tgcttcatag 6360 caagtgtagg aatttcattt acaccaacaa gggcaatagc ctttgttaag ttgttacgta 6420 gtttgaatat gaataaagac gacctatcag acgaccttgt gagtgctgct atgactgact 6480 cgtcttctca aggctttaat ccatccacat ctgcacaagg cacccggcca ggagttgtct 6540 caggatcaaa tccccctgcc cccagtagaa accctcgacc ttcctctacg caaggtggaa 6600 caactgtcaa caatgagctg ctgccgagcg agagcgaatt ggaagcagtc gcaaatgacg 6660 tgacatcaaa ctctgtggcc acgcaaagca caattcgaga gatcttagac ctacttcggg 6720 cacgtagacc aagtgccaac ccaaaggatc ttttctcact cgcgtgggcc tgttaccaca 6780 acggttcatc ccggtatacc aatcttgcca cagacgctcc gtgcgggatg tcccatgctg 6840 aactcaaaga cttagttgag gaattttgca ccttgagaca attttgcggc ttctatgcga 6900 aaacttgtta cgtaaccggg aagcaacaga ataagccgcc ggcaaactgg gccaggaaag 6960 gtttccaaga cgactcaaaa tttgctgcat ttgacttctt caatgccgtt tctagtgact 7020 cagctccaaa tccgccgggt ggaatgcgtt tcaagcccac tcaagctgaa attcttggac 7080 attccctgaa cgctaagatg tctattatcg agtcacgcaa atcatctaat atggtctcaa 7140 cacgagccga tgtcattgca caacaacaaa ttcatgagcc tcctaagcct ctcatgctga 7200 cgttctgata gccttacaca actatgcatc cttacaactt gaacctactt tgctgtcttc 7260 acttctcaaa acccactctc cccagcgaac taagactgta catatatagc ttagctactt 7320 tgaatttgaa attaggacgt aagatgtttc aaaataaacc cttccaggga acttctaagt 7380 gtgccgcacg ccgtagagcg aaacgttata ataggtgttt cgactgcggc agttacttgc 7440 aaaataacca tgtgtgtaaa caattccaaa cacgggctag tacgagttgc tttagcgtta 7500 ttcacgaagg acctgctaag ctatatgctg aagggtcttt ccgacgcgac tctttcgccg 7560 aacaacttat actgaacgat ttggaattga taaaattata taataactag gctctgctcg 7620 agcctcccac tgggtttaca gagctctgga catggacaaa gacacccatg cttgttgata 7680 ttactaaact tactctgtaa caacattt 7708 //