ID JN019813; SV 1; linear; genomic RNA; STD; VRL; 4923 BP. XX AC JN019813; XX DT 12-DEC-2011 (Rel. 111, Created) DT 24-FEB-2012 (Rel. 111, Last updated, Version 2) XX DE Garlic virus B isolate Bate1 replicase gene, partial cds; and TGB1, TGB2, DE 40 kDa protein, coat protein, and NAPB genes, complete cds. XX KW . XX OS Garlic virus B OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Allexivirus. XX RN [1] RP 1-4923 RX DOI; 10.1007/s00705-011-1166-x. RX PUBMED; 22075920. RA Wylie S.J., Luo H., Li H., Jones M.G.; RT "Multiple polyadenylated RNA viruses detected in pooled cultivated and wild RT plant samples"; RL Arch. Virol. 157(2):271-284(2012). XX RN [2] RP 1-4923 RA Wylie S.J.; RT ; RL Submitted (25-MAY-2011) to the INSDC. RL Plant Virus Group, WA State Agricultural Biotechnology Centre, Murdoch RL University, South Street, Perth, WA 6150, Australia XX DR MD5; 433920672fca363cf7428a7e18c48a56. XX FH Key Location/Qualifiers FH FT source 1..4923 FT /organism="Garlic virus B" FT /host="Allium sativum" FT /isolate="Bate1" FT /mol_type="genomic RNA" FT /country="Australia" FT /collected_by="S. Wylie" FT /collection_date="01-Nov-2010" FT /db_xref="taxon:12432" FT CDS <1..1288 FT /codon_start=2 FT /product="replicase" FT /db_xref="GOA:G9F7Y9" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:G9F7Y9" FT /protein_id="AEV51805.1" FT /translation="YASFMNVPRETQPFDKRLWAHCRQLALRTYLSKPTSNLQQGAQRQ FT DPDFPDNAIALFNKSQWVKKLEKVGCKFKAGQTISAFKQSTVLLTTTMALYLRKKREGH FT QPDNVFVMCEKTPEQFNSFVLTKWDFSRPNYTSDYTQYDQSQDSAFLNFELRKARHFGL FT PDEVVDFYAFVKTHAKTFLGNLAVMRLSGEGPTFDANTECNIAYDALRFQLDPSVNACY FT AGDDLVRDKACDERPGWKYSEPLFSLKAKPLVTNKPDFCGWRLTKYGIVKSPVQLYQSL FT QLALSLGKVEEVKRSYAIDYLFAYRLGDQLYDIFDEDELAKHQLVTRTLIKKGMRPPSS FT GEHLPTFHVTSDRLIQDPRATKVSTFESDRVILPLEIIDDHFAFASKSDRNDMTTASNQ FT QTSESNVSANQTDYGGTLLTDMFPDIAML" FT CDS 1408..2118 FT /codon_start=1 FT /product="TGB1" FT /db_xref="GOA:G9F7Z0" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:G9F7Z0" FT /protein_id="AEV51806.1" FT /translation="MKTSLLIQLLTNCGFQRTTVPLEELIVIHGVPGCGKSTLIKTLIT FT HQSVVAYTLGIPYGKTLAHPGIQRPTNILGIQEAETRILDEYQLGSKVDLEPFNVLIGD FT PFQGHSTYRAHFVKTFSHRVPRPVCEFLNSLGYDIQGDREGNLEFVPVFQNNSKGPKGV FT VIHLGPISCQLTRIHRVPSKTPSEVQGLEFKEVTLVFHSNELPGNSEAFFIAATRANEC FT LNIITDQTPPRLGL" FT CDS 2136..2462 FT /codon_start=1 FT /product="TGB2" FT /db_xref="GOA:G9F7Z1" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:G9F7Z1" FT /protein_id="AEV51807.1" FT /translation="MSFTPPPDNSKSILAIAVGAAAALIVFTIRTNHSASVGDNTHRLP FT YGGQYRDGNKLVNYNGPNTGASSPSILWPALSAIILTLVIHFRSGTRRRICIHCSESTS FT AHQS" FT CDS 2558..3631 FT /codon_start=1 FT /product="40 kDa protein" FT /db_xref="InterPro:IPR008398" FT /db_xref="UniProtKB/TrEMBL:G9F7Z2" FT /protein_id="AEV51808.1" FT /translation="MTYATAWQLYEVRDHIINHINTFRNQLAGSLQNAQATLIESNHLT FT LDSKLKPIKEILDTVTSTITTKANEGTSQNQNHVSLREIASREQVPTNRTFFTNLNAAL FT TATGNLLTHVPPARYNLPTTFLPLDELYGLLHALHKNSLEWLTHIGHDADQIISKLSAV FT ENGVLNEIRNDSRRLDLILQRISEVESKINDQATPTLDHHLSETLTSIETRLQELHVKL FT IANPTNNQAGPSSSITKPDSADTHLNHSTLPTFEAKHPTARCRSYGYVEFNGLSLHIPM FT DVRGRRSSTALRLITKHTSSSDSTTVKYELLDDGALLLAEEIRTPHKLNQPLSDSLALL FT HSKCPNFIYKIRDDGLC" FT CDS 3676..4410 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:G9F7Z3" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:G9F7Z3" FT /protein_id="AEV51809.1" FT /translation="MGDRSQGTNPSQGLNAQVQGDGTSGQSQRNPNRNPPPRPQADLNA FT QDNIMPSENDLAAIAGDVTSNSVATKETVKEIFSTLQARRSNATPKDLFSLAWACYHNG FT SSKFTTLTTDAPCGMPHAELKDLVEDYCTLRQFCGYYAKTCYVTGKQQNKPPSNWSRKG FT FQEESKFSAFDFFNAVLSDSSPAPPGGMRFKPTQDEILGHSMNAKMSIIESRKASNMVS FT TRAELLAQQQIHEAPKPLMLTF" FT CDS 4428..4811 FT /codon_start=1 FT /product="NAPB" FT /db_xref="InterPro:IPR008891" FT /db_xref="UniProtKB/TrEMBL:G9F7Z4" FT /protein_id="AEV51810.1" FT /translation="MHPYDFNFLACLQFAQPNLPSDIRTNIYVLSSVSRKLGRKFQQNK FT PFTGTSKCAARRRAKRYNRCFDCGASLNTDHVCKLFTTRASTDCLHVIHEGPAKLYAER FT NFRKSSFAEQLILNDLELMKLYE" XX SQ Sequence 4923 BP; 1431 A; 1306 C; 1001 G; 1185 T; 0 other; ttacgcgagc ttcatgaatg tgcctcgaga gactcaacct tttgataaga gattatgggc 60 acactgtaga cagctagcct tgcgcacgta cctatcaaaa ccgacctcga atcttcagca 120 aggcgcacaa cgtcaagacc ctgattttcc tgacaatgct atcgcgcttt tcaacaagtc 180 gcaatgggtt aagaagcttg agaaagtggg atgcaaattt aaggccggac aaaccatatc 240 tgccttcaaa caatcgaccg ttttgctcac caccaccatg gccctctacc tacgcaagaa 300 gagggaggga caccaacccg acaacgtttt tgtgatgtgc gaaaagacac cagaacagtt 360 taattcgttt gtgctcacca agtgggattt ttctcgacct aactacacgt ccgattacac 420 tcagtacgat cagtcgcaag actctgcatt cctcaacttt gagctgagga aagctcgaca 480 ctttggactg ccggacgagg tggttgactt ttatgcattt gttaaaacgc atgccaaaac 540 gttccttgga aatctggccg tcatgaggct gagcggggag gggccaacat ttgatgccaa 600 tactgaatgc aacatagcct atgacgccct cagatttcaa cttgatccgt cggtgaacgc 660 ttgttacgca ggggatgacc tggtgcgtga caaggcttgt gacgaacgac ccgggtggaa 720 gtattctgag ccgctcttct cactgaaggc caagccatta gtcacaaata aaccagactt 780 ctgcggatgg aggctaacca agtatgggat cgtcaaatct ccagtacaac tatatcagtc 840 gctgcagctc gcccttagtc ttggtaaggt agaagaagtt aagcgaagct acgcaattga 900 ctatctcttc gcctacaggt tgggtgacca gttatacgac atatttgacg aggatgagtt 960 agctaaacat cagcttgtga cccgaactct cattaagaag ggtatgcgac cacccagttc 1020 aggtgaacac ctgcccacgt tccatgtgac gtccgataga ctcatccaag atccccgggc 1080 aaccaaggtg tctaccttcg aatctgacag agtcatctta cctcttgaaa tcatcgacga 1140 ccactttgca ttcgccagca aatcggaccg taacgacatg actacagcga gcaaccaaca 1200 aacttccgaa tcaaatgtct ctgcaaatca gacggactat ggaggcacgc tgttaaccga 1260 catgttccca gacatcgcta tgctctaact aacatttagc aacctaggtt gacattatct 1320 tagtttagta ctaacttcca tttagactta ctctactgaa ctttaaagca tccatatggc 1380 ttagttatgt ttcctaatgt gtttgaaatg aaaacctctt tgcttataca actactcacg 1440 aactgcgggt tccaacgcac tacagtaccc ttggaggagc ttatcgttat ccacggagtg 1500 ccaggctgtg gaaaatctac actcattaag acgttgatta cacatcaatc tgtagtagcc 1560 tacaccttag ggataccata cggcaaaacg cttgctcacc caggtatcca acggcccact 1620 aacattttgg gcattcaaga ggccgaaacc cgaattctgg acgaatacca acttggctcg 1680 aaggttgatc tcgaaccctt caacgttctc atcggtgacc cattccaagg tcattccaca 1740 taccgtgcac atttcgttaa gaccttttct catagggtac cacgtccagt ttgtgagttc 1800 ctaaattcac ttggctacga cattcaaggg gacagggaag gcaatctcga gtttgtacct 1860 gtgttccaaa acaacagcaa gggaccgaag ggtgtagtca tccatcttgg accgatttct 1920 tgccaactta cacgaataca tagggttcca tcaaagacac catccgaggt gcaaggtcta 1980 gaattcaaag aagttaccct cgttttccat tctaacgaac tgcctgggaa ttctgaagcc 2040 ttcttcatag cggccacacg agcaaacgag tgcctcaaca tcatcactga ccaaacaccg 2100 ccacgactag gcctataaca ttaaattaac aactaatgag ctttacccct cccccggaca 2160 atagcaaatc aatccttgca atagctgtgg gcgcggcagc tgctctcata gtatttacca 2220 ttagaactaa ccattccgcg tcagtggggg ataacacaca tcgcttacct tacggaggac 2280 agtaccgtga cgggaataaa cttgtgaact acaacgggcc aaacactgga gcgtcctcac 2340 ccagcatcct ctggccagca ctcagtgcaa tcatactcac tcttgtcata catttccgta 2400 gcggtactcg ccgccgcatt tgtatacatt gctctgagtc tacttctgcc caccagtcct 2460 agttgcatcc taaccataac gggctcgact gtgcaagtgt ccaattgccc attagaacag 2520 gtccccgaca tagttaaatc gtttgcctgg agtgcacatg acatacgcta cagcttggca 2580 gctgtatgag gtacgggacc acatcattaa tcacatcaac acattcagga atcagctcgc 2640 cgggtcactt cagaatgcac aagccacact catagagtcg aaccacctga cattagatag 2700 caaactcaag cccatcaaag aaattcttga caccgtcaca tcaaccatca caaccaaggc 2760 taatgaaggc acttcacaga accaaaacca tgtttcctta agagagattg ccagccgtga 2820 gcaagttccc actaaccgaa catttttcac aaacttgaat gcggcactca ccgctacggg 2880 aaacttgcta actcacgtgc caccagctag gtacaacttg cccactacct tccttccttt 2940 ggacgaattg tacgggttgc tacatgcgtt gcacaagaat agcttagagt ggttgactca 3000 tattggccat gatgctgacc agatcattag caaattgagc gccgtcgaaa atggcgtact 3060 caatgagatc cgcaacgact ccaggagact ggacttgatc ttgcagagga tttctgaagt 3120 cgaatcaaaa atcaacgacc aagccacacc cactcttgac catcacttgt cagaaacttt 3180 aacttccata gaaacgagac ttcaagaatt acacgtcaaa cttatagcca accctaccaa 3240 caaccaggcc gggccgagca gcagtataac taaacctgat agcgctgaca cgcatttaaa 3300 tcattcaact ctcccaactt ttgaagcaaa acaccctact gcacgatgtc gctcctacgg 3360 atacgtggag tttaatggcc ttagcttgca catacccatg gatgtccgag gcagacgatc 3420 aagcactgct ttgcgcttaa tcaccaaaca cacttcatcc tctgattcta ccacagtcaa 3480 gtatgagctt ctagacgacg gtgcattatt gctcgctgag gagatcagaa cgcctcacaa 3540 actcaatcag ccacttagcg attccttagc acttctacac tccaaatgtc ccaatttcat 3600 ttataaaatc agggatgatg gtttgtgtta agtttggatt tgggttgaat taatttaaac 3660 cgacttagaa acacgatggg agacaggtcg caaggaacaa atccgtccca aggactcaac 3720 gctcaagtgc agggagacgg gacaagcggt cagagtcaac gcaacccaaa cagaaatcca 3780 ccgcctagac ctcaagctga cttgaatgct caggacaaca tcatgcccag tgaaaatgac 3840 cttgcggcaa ttgccggtga cgtgacatct aactctgtcg ctaccaagga aacggtgaaa 3900 gaaattttca gcaccctcca agctaggagg agtaacgcca cacctaaaga cctattttca 3960 cttgcttggg cttgctacca caatggatca tcaaagttta cgactttaac cacggacgct 4020 ccctgcggca tgcctcatgc cgaactcaag gatttagttg aggattactg cacgctgaga 4080 caattttgtg gatactacgc gaaaacatgc tatgtaacgg gcaaacagca gaataagccc 4140 ccttcaaact ggtcgcgtaa agggttccaa gaagaatcaa aattttcggc gtttgacttc 4200 ttcaacgctg tgcttagcga ctcttctccc gcccctcctg gtggcatgcg tttcaaacca 4260 acacaagatg agattttggg tcactccatg aacgccaaaa tgtctataat tgagtcacgc 4320 aaggcatcaa acatggtatc cactcgcgca gaactgctag cacaacaaca gattcatgaa 4380 gcaccaaaac cactcatgct tacattttag aaatccttga cccagaaatg catccttacg 4440 acttcaactt cttagcctgt ctacaatttg ctcaacccaa cctcccaagc gatattagaa 4500 ctaatatata tgtattatct tccgtaagta ggaaactagg tcgtaaattc caacagaata 4560 aaccctttac tgggacgtcg aaatgtgcag ctcgccgtag agcaaaacgc tacaaccgat 4620 gttttgactg cggcgcctcg ctgaacactg accacgtatg taaattattc acaactcgag 4680 ccagtacaga ctgcttacat gtcattcatg aaggacccgc taagctatat gctgaaagga 4740 acttccgtaa atcttccttt gctgagcagc ttatactgaa cgatttggaa cttatgaaat 4800 tatatgaata aacaggctct gcccgagcct cccaccgggt ttacagggct ctggacatgg 4860 acaaagacac ccatgctgtt gatatcacta aacttacctt gtgacaacat ttgtccacgc 4920 gac 4923 //