ID JN019812; SV 1; linear; genomic RNA; STD; VRL; 4363 BP. XX AC JN019812; XX DT 12-DEC-2011 (Rel. 111, Created) DT 24-FEB-2012 (Rel. 111, Last updated, Version 2) XX DE Garlic virus A isolate Bate1 replicase (RdRp) gene, partial cds; and triple DE gene block 1, triple gene block 2, 40 kDa protein, coat protein, and NABP DE genes, complete cds. XX KW . XX OS Garlic virus A OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Allexivirus. XX RN [1] RP 1-4363 RX DOI; 10.1007/s00705-011-1166-x. RX PUBMED; 22075920. RA Wylie S.J., Luo H., Li H., Jones M.G.; RT "Multiple polyadenylated RNA viruses detected in pooled cultivated and wild RT plant samples"; RL Arch. Virol. 157(2):271-284(2012). XX RN [2] RP 1-4363 RA Wylie S.J.; RT ; RL Submitted (24-MAY-2011) to the INSDC. RL Plant Virus Group, WA State Agricultural Biotechnology Centre, Murdoch RL University, South Street, Perth, WA 6150, Australia XX DR MD5; c63786f922e622ade128ea1e3c3c2fe9. XX FH Key Location/Qualifiers FH FT source 1..4363 FT /organism="Garlic virus A" FT /host="Allium sativum" FT /isolate="Bate1" FT /mol_type="genomic RNA" FT /country="Australia" FT /collection_date="01-Nov-2010" FT /db_xref="taxon:12433" FT gene <1..677 FT /gene="RdRp" FT CDS <1..677 FT /codon_start=3 FT /gene="RdRp" FT /product="replicase" FT /db_xref="UniProtKB/TrEMBL:G9F7Y3" FT /protein_id="AEV51800.1" FT /translation="CNIAYDALRFRLDDNVRACYAGDDLVRDRACEERAGWVYSERLFS FT LKAKPLVTNKPDFCGWRLTPYGIVKSPIQLYQSLQLALRLGKVEDVKRSYAIDYLFAYR FT LGDKLYDIFDEEELEKHQLVTRTLIKKGMQPPESGNHLPTFHITSDRLIRDPRAIKIQS FT YESDRILLHQPIIIDDYIPSNPTGNSSRQTTFQTAHQEMAVACQNGVEGLLTTRWFGKS FT RN" FT CDS 800..1555 FT /codon_start=1 FT /product="triple gene block 1" FT /db_xref="GOA:G9F7Y4" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:G9F7Y4" FT /protein_id="AEV51799.1" FT /translation="MLEMKTDLLLQIIANNDFSRTAEPLTEPLIIHGVPGSGKSTLVKA FT LIPNRSTIAFTLGAPYGQTLAHPGVEKFTKGKAIQNILRHETRILDEYQLGEGVDICAF FT NFLIGDPFQGKLHLKAHYIKNYSHRVPAPICHFLRTLDYEIFGSRPGEVVKLPVYSKNP FT TAPTGQVLHLGAASCILTRQHNIHSKSPADVQGLEFSEITLVYHSTERLNSRANFYIAA FT TRALDRLNLITDEALPALQNPTAPTTIRG" FT CDS 1552..1863 FT /codon_start=1 FT /product="triple gene block 2" FT /db_xref="GOA:G9F7Y5" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:G9F7Y5" FT /protein_id="AEV51801.1" FT /translation="MSFAPPPDYSKAYITLAGGAALGVLIYTLRSNHLPHVGDNTHHLP FT HGGRYCDGNKQVHYFKPNSGYQSGGSYVPPLIIFTLTLAILLLSRPRRRICIRCSESH" FT CDS 1974..3068 FT /codon_start=1 FT /product="40 kDa protein" FT /db_xref="InterPro:IPR008398" FT /db_xref="UniProtKB/TrEMBL:G9F7Y6" FT /protein_id="AEV51802.1" FT /translation="MVIVTTFHIDRARDLVINNSNSIRDCLLNKLHTISNEVRTVSAHV FT DSSMASNRINLQTIYNHLSGSNNNSTQAPTAATPEPLVDTLGTGDATVPRTFFSNAALA FT VDATRALLGHVPPARYDVPPATLPLDELYGQLHALHQNTLEWLTHINHNVDSILANFNP FT INSLSQSSPLSKIHEALSSLTKTIDSICPSSQSNSLNANQPGSSKPPTKLEGIEQSLEA FT LHRKIDELSSSLKGTNPGPSTTPNPSTSLPTNSAKNLPVYQADHPSIPCRTYGTILLDG FT VYSKIPMDIIGRPASTALRLELCVTPSDQSTTVGYKIFDDGYLLTSDDVETSHKLQHYP FT GDCLALLHQRCPNFIYKIKTHGLC" FT CDS 3125..3886 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:G9F7Y7" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:G9F7Y7" FT /protein_id="AEV51803.1" FT /translation="MNNPVDPGTSQQMSGTTGQVSQPRPNVNPFGPNQTRPLGNRDPPN FT NSSNMSSNSDELMPAVTDFETLTRDVESNSVASKLIIRDILDMLQAKRQGATPKDLFSL FT AWTCYHNGSSRFVTLTTDAPCGMAHSELKDLVENSCTLRQFCGFYAKACYVAGKQQNKP FT PANWSRKGYQEDSKFAAFDFFNAVLSDSSPSPPGGMRFKPTDAEILAHSMNAKMSIVES FT RRATNMVSTRADLIAQQQIHEQPKPPMITFS" FT CDS 3883..4269 FT /codon_start=1 FT /product="NABP" FT /db_xref="InterPro:IPR008891" FT /db_xref="UniProtKB/TrEMBL:G9F7Y8" FT /protein_id="AEV51804.1" FT /translation="MIPQDFNLLCCLHLAKPSLPRDLKTLLFFSCVNECKLVRKSSQNK FT PFQGTSKFAQRRRAKRYNRCFECGAYLLNNHECRILTSRAQSDVLAVIHEGPVKLHAER FT TYRPNSDAALLIESDLLYIKLFQN" XX SQ Sequence 4363 BP; 1206 A; 1262 C; 865 G; 1030 T; 0 other; agtgcaatat tgcctatgac gccctgcgct tccgccttga cgataatgtt cgtgcctgct 60 acgctggaga tgatttagtg cgtgaccgag cttgcgaaga acgggctggg tgggtatact 120 ctgaacgtct cttcagcctc aaagctaaac cgctagttac taataaaccc gacttctgcg 180 gttggagact caccccttac ggaatagtga aatctcctat ccagttgtat caatcgctcc 240 aactagctct acgtcttggg aaggttgaag acgtcaaaag aagttacgcg atagactatc 300 tgttcgctta caggctcggc gacaagttgt atgacatttt tgacgaagaa gagctcgaaa 360 aacaccagtt ggtaaccaga actctcatca agaaaggcat gcaaccgccg gaatctggca 420 atcacttgcc aacattccac ataacatccg acaggctgat ccgcgaccca cgagctatca 480 aaatccagtc ctatgagagc gataggatcc tcctacacca accaatcata atcgacgact 540 acatcccaag caatccgaca ggcaacagct ccagacaaac aactttccaa accgcacacc 600 aggagatggc cgtggcttgc cagaatggag ttgagggcct tctgaccaca cgatggttcg 660 gtaagtcaag aaattgacgt tccgcactaa ctgactttag atttgctgac ttagcatcga 720 ctcaatttag acacatcttg agcatctttc ctgctcattt cgctcactga caacctttat 780 agctagttat gttccagaaa tgctcgaaat gaagactgac ctcctactac agattatagc 840 taataacgac ttttcccgca ctgcagaacc tctcacagag ccactcatta tacacggtgt 900 ccccggctcc ggcaaatcta ctctggttaa agcattgata cctaaccgat ctactatcgc 960 tttcacactc ggcgcccctt acggccaaac cctcgcacac ccaggagttg aaaaattcac 1020 aaaaggaaag gctatccaaa acatcttacg ccacgaaaca aggattctcg acgaatacca 1080 attaggtgaa ggggttgaca tctgcgcctt taacttcctt attggagacc ctttccaagg 1140 caaactacac ttaaaggcgc actacataaa gaactattcg caccgcgtgc cagcacccat 1200 ctgccacttc ttacgaactc tcgattacga aatattcgga tcacgacctg gggaggttgt 1260 caaactcccg gtgtacagca agaatccaac cgcgccgact gggcaagtcc tacacctagg 1320 tgctgcctcc tgcattctaa ccagacaaca caacatccac tccaaatctc ccgctgacgt 1380 ccagggcctt gaattctcgg agatcactct agtgtatcac tctaccgaac gcctgaattc 1440 ccgcgccaac ttttatatcg ctgccacacg cgcccttgat cgcttgaacc tgatcactga 1500 cgaagcgcta cctgctcttc agaatcccac cgcaccaacc accattcgcg gatgagcttt 1560 gcaccaccac cggattactc taaggcgtat atcacactag ctgggggcgc tgctcttgga 1620 gtactcatct atacacttag gtccaaccat ctgccgcacg taggggacaa cactcatcat 1680 ctaccccacg gtggtcgcta ctgtgacggc aacaagcaag tccactactt caaacccaat 1740 tctggctacc aatcaggagg atcctacgtc cccccgctca tcatcttcac cctcactttg 1800 gccatacttc ttcttagccg tcctcgccgc cgcatctgca tacgctgctc tgagtctcat 1860 taaaggtgtg ccacaagggt gtgtcatcat tatcactggt tcgactgtgc aagtttctaa 1920 ttgccctctg gaaaaaatcc cggccgtagt ggaatccttc cgctggagtg gtcatggtaa 1980 ttgtaacaac tttccacatc gatcgtgccc gggatctggt catcaacaac tcaaacagca 2040 ttagagactg cctgctcaac aagttgcata caatctcaaa tgaagtacgc actgttagcg 2100 ctcatgtcga cagttccatg gcctccaaca ggatcaactt gcaaaccatt tacaaccatc 2160 taagcggtag taacaataac tctactcaag cgccaacggc cgcaaccccg gaaccgctag 2220 ttgatacact tggaaccgga gatgcaaccg tcccacgcac tttcttctcg aacgcagcac 2280 tcgccgtgga cgccacccgc gctttacttg gtcacgtgcc accagccaga tacgatgtgc 2340 caccggcaac tcttcccctt gatgaacttt atgggcaact ccacgcgtta caccagaata 2400 ctctagagtg gttaacacac atcaatcata atgttgactc catcttggcc aatttcaatc 2460 cgatcaactc attatcgcaa agtagcccct taagcaaaat acatgaggcg ttgtcatctt 2520 tgaccaagac aattgatagc atatgtccaa gctcgcagtc gaatagctta aacgcaaacc 2580 aacccggttc ctcaaaacct cccacaaaac tcgaaggaat cgagcagagc ttagaagcac 2640 tacaccggaa aatcgatgag ctctcttcat ctctcaaagg taccaatcct gggccaagca 2700 ccacgccgaa tccatccaca tcgctaccaa ccaactcggc caagaatttg cccgtttatc 2760 aagccgatca tccgtccata ccatgcagaa cgtacgggac tatacttctc gacggagtct 2820 attcaaagat acccatggac attattggcc gaccggcttc cacagctctg cgacttgaac 2880 tttgcgtcac acccagtgat caatccacca ccgttggtta caagatcttc gatgatgggt 2940 atctcttgac ctcagacgat gtggaaacaa gtcacaaact acaacattat ccaggcgact 3000 gtctggcact cttacaccag aggtgtccga atttcatata taagattaag acgcatggtc 3060 tttgttaagt taattggaag ggtgaattag acgagtagtg aggaatcatt tggaccaaac 3120 cttgatgaat aatcctgtcg acccgggcac gtcacaacaa atgtctggta ccacgggcca 3180 agttagtcaa cctcgaccca atgtaaaccc cttcggtcca aatcagaccc ggcccctcgg 3240 caatcgtgat ccaccaaata acagcagcaa tatgagtagt aactccgacg aactcatgcc 3300 cgccgtgacc gatttcgaga ctctaacgag ggatgtcgaa tccaactcag tcgcttcaaa 3360 gttaattatt cgcgacatac ttgacatgtt acaagctaag cgacaaggcg ccactccaaa 3420 agatcttttc tccctggcct ggacctgtta ccataacggc tcatcgcgct tcgtcacctt 3480 gaccactgat gcaccctgtg gtatggcaca ctcggaactc aaagatcttg tcgagaactc 3540 ttgcacattg agacaattct gtggatttta cgccaaagcc tgctacgtcg cgggcaaaca 3600 acagaacaag ccacccgcta actggtctag gaaaggctat caggaggact caaaattcgc 3660 tgctttcgac ttctttaacg ctgtgcttag cgattcttcc cccagtcctc ccggaggtat 3720 gagattcaaa cccacagacg ccgaaattct cgcacactct atgaatgcca agatgtctat 3780 cgtggagtct agacgcgcca ccaacatggt ctcgacccga gcggatctaa tcgcccagca 3840 acaaatacat gagcaaccaa aacctccaat gatcacattc tcatgattcc tcaagacttt 3900 aatctacttt gctgcttaca ccttgctaaa ccctctcttc ctcgagacct caaaactctt 3960 ctcttcttca gctgtgttaa tgagtgtaaa ttagtacgta aatctagtca gaataagccg 4020 tttcaaggca cttccaagtt tgcccaacgc cgtagagcga aacgctacaa taggtgtttc 4080 gagtgcggtg cctacttatt aaacaaccac gagtgtagga tccttacatc acgtgctcag 4140 tcggacgtgc tagctgtcat acacgaggga cccgttaagc tacatgctga aaggacctac 4200 aggccgaatt ctgacgctgc actactcatt gagagtgatt tactgtatat taagctattt 4260 caaaactaaa ggcttgaccc aagcctccca cagggtttac agggttctgg acgtggacaa 4320 agacacccac gattgttgat attgctaaac ttaccttgca aca 4363 //