ID JN015068; SV 1; linear; genomic RNA; STD; VRL; 5678 BP. XX AC JN015068; XX DT 20-JUN-2013 (Rel. 117, Created) DT 20-JUN-2013 (Rel. 117, Last updated, Version 1) XX DE Brassica yellows virus, complete genome. XX KW . XX OS Brassica yellows virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5678 RA Xiang H., Dong S., Shang Q., Zhou C., Li D., Yu J., Han C.; RT "Sequence analysis of a third genotype of BrYV in China"; RL Unpublished. XX RN [2] RP 1-5678 RA Xiang H., Dong S., Shang Q., Zhou C., Li D., Yu J., Han C.; RT ; RL Submitted (24-MAY-2011) to the INSDC. RL Plant Pathology, China Agricultural University, 2 Yuanmingyuan West Rd., RL Haidian District, Beijing 100193, China XX DR MD5; 91608d2f9cb2eb343ca08146e69e71fe. DR EuropePMC; PMC5120529; 27876078. XX FH Key Location/Qualifiers FH FT source 1..5678 FT /organism="Brassica yellows virus" FT /isolate="Beijing" FT /mol_type="genomic RNA" FT /country="China" FT /isolation_source="Raphanus sativus" FT /collection_date="Oct-2010" FT /note="genotype: C" FT /db_xref="taxon:1046403" FT 5'UTR 1..31 FT CDS 32..781 FT /codon_start=1 FT /product="RNA silencing suppressor" FT /note="P0; ORF0" FT /db_xref="GOA:R9Q9K3" FT /db_xref="InterPro:IPR006755" FT /db_xref="UniProtKB/TrEMBL:R9Q9K3" FT /protein_id="AEI55850.1" FT /translation="MQFVAHDDLHTLEVRKVRYLHPRQVKFLLAGLLLNIEPFVRAIQE FT RNNEFKTDVFLRSLLYQLPLYLGDHIHDDVRVSVLVAEPELCAWFSLQTGYAPASTSGR FT VNTHVPGTKTSRRRIIQRSLASDFSEKFKRFPECLFVSLEHFQRLLSIWTKDAEERLFS FT GCREISVGSHTLVELANLGELIRVMVVGGEFHNPRLLSRLAVHCYKIYGEDGFISFWRI FT ANLDYLDCFLTPEEILFSSSVYTEMFV" FT CDS join(174..1556,1556..3280) FT /codon_start=1 FT /ribosomal_slippage FT /product="P1-P2 fusion protein" FT /note="RdRp; ORF1-ORF2" FT /db_xref="GOA:R9Q9J7" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:R9Q9J7" FT /protein_id="AEI55852.1" FT /translation="MNSKLMFSFALFFTSFLYTSETTSTMMFEFPYLLLNQSYVPGFHY FT KRDTLPPPPQAVLTHTCPEPRPLVEESYNDLLRAISQKSSSDFQNVYSLALNISSDFCQ FT SGLKTLKSASFLAVEKFLWGLTRLWSSLILASLSALWWLAVNFTTPVFCLALLYTVTRF FT MVKTVSFLFGGLPIWIISIVFSLLKKSFSALRSTPKCLYEKAVDGFQSFTIPQSPPKSC FT VIPITHASGNHAGYASCVKLYNGENALLTATHVLRDSNNAVAVSAKGLKARIPLAEFKT FT IAKSDKGDVTLLRGPPNWEGLLGCKAANVITAANLAKCKATIYSFERDGWVSGYAEIVG FT SEGTDVMVLSHTEGGHSGSPYFNGKTILGVHSGASATGNYNLMAPIPSIPGLTSPTYVF FT ETTAPQGRVFAQEDIAEIEKLYSDVQRDVQRTLNFKSKTGVNWADMEEDDDIFFESRED FT LSGKRSARHRPRNKRRRQLHPRDKQRRWERDDGENNLVSGGENKSREYREESDRRDFRE FT SGENPEIPPQKNHKKTAGEFERYFSSLYNWEVPTSPCEVPGFRHCGKLPQYYHPKQKEE FT SSWGKTLVRNHPTLGEKTSGFGWPKFGPEAELKSLRLQASRWLDRAQSAEIPSDAERER FT VIQKTADVYHPCQTNGPAATRGGALTWNNFMIDFKQAVFSLEFDAGIGVPYIAYGKPTH FT RGWVEDPKHLPVLAQLTFIRLQKMLEVNFEDMGPEELIQNGLCDPIRLFVKGEPHKQAK FT LDEGRYRLIMSVSLVDQLVARVLFQNQNKREIALWRAIPSKPGFGLSTDEQVLDFVKGL FT ARQVGTTTSEVVTNWKDYLTPTDCSGFDWSVADWMLQDDMIVRNRLTIDLNPVTERLRS FT CWLRCISNSVLCLSDGTLLAQTHPGVQKSGSYNTSSSNSRIRVMAAFHTGAAWAMAMGD FT DALESNPADLAAYKRLGFKVEVSGQLEFCSHIFRAPDLALPVNEDKMIYKLIYGYNPGS FT GNAEVVANYLAACFSVLNELRHDPASVELLYSWLVDPVLPQRISRE" FT CDS 174..1997 FT /codon_start=1 FT /product="P1" FT /note="ORF1" FT /db_xref="GOA:R9Q9I1" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:R9Q9I1" FT /protein_id="AEI55851.1" FT /translation="MNSKLMFSFALFFTSFLYTSETTSTMMFEFPYLLLNQSYVPGFHY FT KRDTLPPPPQAVLTHTCPEPRPLVEESYNDLLRAISQKSSSDFQNVYSLALNISSDFCQ FT SGLKTLKSASFLAVEKFLWGLTRLWSSLILASLSALWWLAVNFTTPVFCLALLYTVTRF FT MVKTVSFLFGGLPIWIISIVFSLLKKSFSALRSTPKCLYEKAVDGFQSFTIPQSPPKSC FT VIPITHASGNHAGYASCVKLYNGENALLTATHVLRDSNNAVAVSAKGLKARIPLAEFKT FT IAKSDKGDVTLLRGPPNWEGLLGCKAANVITAANLAKCKATIYSFERDGWVSGYAEIVG FT SEGTDVMVLSHTEGGHSGSPYFNGKTILGVHSGASATGNYNLMAPIPSIPGLTSPTYVF FT ETTAPQGRVFAQEDIAEIEKLYSDVQRDVQRTLNFKSKTGVNWADMEEDDDIFFESRED FT LSGNGVRGTDRGTNGEGSFTPATNNVDGKEMMEKIISSLVGKINLENIEKKVIEEISAK FT AVKTQRSRRRRTTRKQPESSKDTSPHSTTGRYQPPHVRSPASATAVSCPNTTTPSKKKN FT QAGAKPSSGTIPRWVRKQAASAGPNSAPKQN" FT CDS 3484..4092 FT /codon_start=1 FT /product="coat protein" FT /note="P3; ORF3" FT /db_xref="GOA:R9Q9K1" FT /db_xref="InterPro:IPR001517" FT /db_xref="UniProtKB/TrEMBL:R9Q9K1" FT /protein_id="AEI55853.1" FT /translation="MNTVVGRRTINGRRRPRRQTRRIQRNQPVVVVQASRTTQRRPRRR FT RRGNNRTGRTVPTRGASSSETFVFSKDNLAGSSSGAITFGPSLSDCPAFSNGMLKAYHE FT YKISMVILEFVSEASSQNSGSIAYELDPHCKLNSLSSTINKFGITKPGRRSFTASLING FT TEWHDVAEDQFRILYKGNGSSSIAGSFRITIKCQFHNPK" FT CDS 3515..4042 FT /codon_start=1 FT /product="movement protein" FT /note="P4; ORF4" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:R9Q9M4" FT /protein_id="AEI55854.1" FT /translation="MEEDDHAGKQDAFSEISQWLWSKPLGQHNADLDDDEEVTTGQEEL FT FLPEEQVRARHLFSQKTISREVPAEQSRSGRVYQTARHSLMECSRPTMSIKSQWSFWSS FT SPRPLPKTPVPSLTSWTHTVNSIHSPPRLTNSGSQSPGGGRLQRLSSMGQNGTTLPRTN FT SGSSTKAMVLHR" FT CDS 4339..5493 FT /codon_start=1 FT /product="P5" FT /note="read through domain; ORF5" FT /db_xref="GOA:R9Q9K4" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:R9Q9K4" FT /protein_id="AEI55855.1" FT /translation="MYVFPVPEGAWSVEISTEGYQPTASTTDPNKGKVDGMIAYSDDQS FT EVWNVGINQNCNITNLKADNSWKYGHPDMEINNCHFNQGQVLEMDGTISFHVETTGSDA FT SFFLVGPAVQKQSKYNYAVSYGAWTDRDMELGLISVSLDEKDGSRGSAMKKPRREGHSK FT AVSTWETINLPEKENSEKSITSQRQDFKTQPQQGFSDAGSEDNKEWDFTPGTRMFLPED FT FEEPREVQNDDLLRDRGIVVDPSLLEIPDSPPPRADHKDTDPWAEVERYKSSHKALVGE FT DTRSRQSSLTGGSLAGGSLRKLKPVTPDEYEQAKLKDESRLQYEQDLAEYHRSLKRPSS FT ALIPRDDGELMEMDPSQRKLMKNAGVNLDKYGRPIKKGFLSFRK" FT 3'UTR 5494..5678 XX SQ Sequence 5678 BP; 1634 A; 1421 C; 1337 G; 1286 T; 0 other; acaaaagaaa caggatggga atcctaagtt gatgcaattt gttgctcacg acgacttaca 60 cactttagaa gtaagaaaag tcagatacct ccatccgcga caagtaaagt ttcttttagc 120 tggcctattg cttaacatcg aaccatttgt aagagcaatc caagagcgca ataatgaatt 180 caaaactgat gttttccttc gctctcttct ttaccagctt cctctatacc tcggagacca 240 catccacgat gatgttcgag tttccgtact tgttgctgaa ccagagctat gtgcctggtt 300 ttcattacaa acgggatacg ctcccgcctc cacctcaggc cgtgttaaca cacacgtgcc 360 cggaaccaag acctctcgta gaagaatcat acaacgatct cttgcgagcg atttctcaga 420 aaagttcaag cgatttccag aatgtttatt cgttagcctt gaacatttcc agcgacttct 480 gtcaatctgg actaaagacg ctgaagagcg cctcttttct ggctgtcgag aaatttctgt 540 ggggtctcac acgcttgtgg agctcgctaa tcttggcgag cttatccgcg ttatggtggt 600 tggcggtgaa tttcacaacc cccgtcttct gtctcgcctt gctgtacact gttacaagat 660 ttatggtgaa gacggtttca tttctttttg gaggattgcc aatctggatt atctcgattg 720 ttttctcact cctgaagaaa tccttttcag ctcttcggtc tacaccgaaa tgtttgtatg 780 aaaaggctgt agacgggttt caaagcttca ctatcccgca gagccccccc aaatcttgcg 840 tgattcccat cacccacgca agcggaaacc acgctggcta cgccagctgt gtaaagctgt 900 acaatggaga aaacgcattg ctaacagcga ctcacgtttt acgtgatagc aacaatgcag 960 tagctgtttc cgccaaaggg cttaaagctc ggattccact cgctgaattt aaaacaatcg 1020 cgaaatccga caaaggtgat gttaccctcc tccgcggccc ccccaactgg gaaggactgt 1080 taggctgcaa agcagccaac gtcatcacag ccgctaacct agcaaagtgc aaagcaacca 1140 tatactcctt cgagagagat ggctgggtta gtggttatgc tgaaattgtt ggctcagaag 1200 gaaccgatgt tatggtcctg agccacacgg aaggaggaca ctccggaagc ccctatttta 1260 atggcaaaac catcttaggg gtccattcag gtgccagtgc tactggtaat tataatctga 1320 tggcaccaat cccgtctatc cccggactca caagccccac ttatgtgttt gaaacaactg 1380 ctccacaagg cagagttttc gcacaagaag atattgctga gattgagaaa ctctactcag 1440 acgtccaacg agacgtccaa cggacactca atttcaaatc caaaactgga gtgaattggg 1500 ctgatatgga agaagatgat gatatcttct ttgaaagcag ggaagacttg tcgggaaacg 1560 gagtgcgcgg caccgaccgc ggaacaaacg gagaaggcag cttcaccccc gcgacaaaca 1620 acgtcgatgg gaaagagatg atggagaaaa taatctcgtc tctggtgggg aaaataaatc 1680 tcgagaatat cgagaagaaa gtgatcgaag agatttccgc gaaagcggtg aaaacccaga 1740 gatcccgccg cagaagaacc acaagaaaac agccggagag ttcgaaagat acttctcctc 1800 actctacaac tgggaggtac caacctcccc atgtgaggtc cccggcttcc gccactgcgg 1860 taagctgccc caatactacc accccaagca aaaagaagaa tcaagctggg gcaaaaccct 1920 cgtcaggaac catcccacgt tgggtgagaa aacaagcggc ttcggctggc ccaaattcgg 1980 ccccgaagca gaactgaaga gcctgcgatt gcaggcttca aggtggctgg accgcgccca 2040 gtccgctgaa ataccctctg acgctgagag ggagcgtgtg atacaaaaga ccgcagatgt 2100 ttaccatcca tgccaaacaa atggacctgc ggcaacccga ggaggagcac tgacctggaa 2160 caacttcatg atagatttta aacaggctgt gttctcgcta gagttcgacg ctggaatcgg 2220 cgtcccctat attgcctatg gcaagcccac acaccgtggg tgggtagaag atccgaaaca 2280 cctccccgtc ctagctcaat tgaccttcat ccgactacag aagatgttgg aggttaattt 2340 cgaagatatg ggaccagagg agctgatcca gaacggtttg tgcgacccca tccgattatt 2400 cgtgaagggt gaaccgcata aacaagcgaa gctcgatgaa ggccgctacc gcctcatcat 2460 gagcgtttcc ctcgtggacc aactcgtagc ccgggttctg tttcaaaatc agaacaagcg 2520 ggaaatcgcc ctatggaggg ccatccccag taaacccggt tttggcttgt ctacggacga 2580 gcaagtgctg gacttcgtaa aaggtctggc ccgtcaagtt ggaactacaa cgtctgaagt 2640 tgtcacaaac tggaaagatt acttgacgcc tacggattgc tccggtttcg actggagtgt 2700 tgcggactgg atgctccaag acgatatgat cgtccgcaat agacttacca tcgacctcaa 2760 ccccgtaaca gaaagattaa gatcctgttg gttgagatgc atctcaaact cagtgctgtg 2820 cctgagtgat ggtacccttt tagcccaaac ccatccgggc gttcagaaaa gtgggagcta 2880 caacacatca agctccaact cccggatcag agttatggcc gcctttcata caggcgcagc 2940 ctgggctatg gcgatgggcg atgacgccct cgagtccaat cccgctgacc tagcagcgta 3000 caaaagacta ggattcaagg tagaggtttc cggacaactg gaattctgct ctcacatctt 3060 tagagcgccg gacctcgccc tccctgtgaa cgaagacaag atgatctaca aactgatcta 3120 tggctacaac ccagggagcg gaaacgctga ggtagttgcg aactacttag ccgcctgttt 3180 ctcagttctg aacgagttgc ggcatgaccc agcgtccgtt gaacttcttt actcgtggtt 3240 agttgaccca gtgctaccac aaaggatatc cagggagtaa agaagcaaac aagtcagctt 3300 acattgaaat tctaaagagg tttctgcaac agtaagagac tcaagcaaac ccaattaaag 3360 atacaacgga ttacaaattc ctagcaggtt tcaccgcagg cttcgtttca tcgataccaa 3420 tatccgtgat cagtatctat ttcatctacc taagaatctc caaacacgtg cgcgaaattg 3480 ttaatgaata cagtcgtggg taggagaaca atcaatggaa gaagacgacc acgcaggcaa 3540 acaagacgca ttcagcgaaa tcagccagtg gttgtggtcc aagcctctcg gacaacacaa 3600 cgccgaccta gacgacgacg aagaggtaac aaccggacag gaagaactgt tcctaccaga 3660 ggagcaagtt cgagcgagac atttgttttc tcaaaagaca atctcgcggg aagttccagc 3720 ggagcaatca cgttcgggcc gagtttatca gactgcccgg cattctctaa tggaatgctc 3780 aaggcctacc atgagtataa aatctcaatg gtcattttgg agttcgtctc cgaggcctct 3840 tcccaaaact ccggttccat cgcttacgag ctggacccac actgtaaact caattcactc 3900 tcctccacga ttaacaaatt cgggatcaca aagcccggga ggaggtcgtt tacagcgtct 3960 ctcatcaatg ggacagaatg gcacgacgtt gccgaggacc aattcaggat cctctacaaa 4020 ggcaatggtt cttcatcgat agctggttct ttcagaatca ccataaagtg ccaattccac 4080 aatcccaaat aggtagacga ggaacctagc cccagtccag ggccaagccc cgaaccaaca 4140 ccaacaccaa ctaaagagta cagatggata gtttacactg gcgtctgtag aactctgatc 4200 aaagcccaaa caacagatga ttccatttat ctgtatgatt tgggttccca acgcctccgg 4260 tacattgaga atgaaaacat gaactggacc aacgtggacg cccgatagta ttcaagtaat 4320 aacgtcaaag cggttcccat gtatgtgttt ccagtcccgg aaggagcttg gtcggttgag 4380 atatcaacgg aaggttatca acctacagcc agtaccaccg acccgaacaa gggaaaagtt 4440 gatggcatga ttgcctattc tgatgatcag tcagaagtgt ggaatgttgg gataaatcaa 4500 aattgtaaca tcaccaacct gaaagcagac aactcatgga agtatgggca cccagatatg 4560 gaaattaaca attgccactt caatcaggga caggttctag agatggatgg tacaatctcc 4620 tttcacgtag agaccaccgg ctcggacgca tcgttctttc tggtcggtcc cgctgttcaa 4680 aaacagtcga agtacaacta cgccgtttca tacggagcgt ggacagatcg tgatatggag 4740 ttgggcttga tttccgtttc tttggatgag aaagacggat caagaggttc cgctatgaaa 4800 aaacctcgtc gagaaggaca ctcgaaggca gtctcaacct gggagactat aaacttaccg 4860 gagaaggaaa actccgagaa atccataacc agtcaaagac aagactttaa aactcaacct 4920 caacaaggtt tctcagatgc tggttctgag gacaacaagg aatgggattt cacacccggg 4980 actcgaatgt ttcttcctga agacttcgag gaaccccgtg aggttcagaa tgacgatctt 5040 ctcagagata gaggaattgt agtagacccc tccttgttgg aaatacctga ctcacctcct 5100 ccaagagcgg accataagga cacagatcct tgggctgagg tcgagagata caaatcttcc 5160 cataaagccc ttgtcggcga ggacacgcgt tcccgacaat catccttaac aggaggttcg 5220 cttgctggcg gcagtctcag aaaactgaag ccggttacac cggacgagta tgagcaggcg 5280 aagctgaaag atgagtcgag gctccagtac gaacaggacc tagctgagta ccacagaagt 5340 ttgaaaagac cttcaagcgc gttaatacca cgtgatgatg gtgaactcat ggaaatggat 5400 ccttctcaac gaaagttgat gaaaaacgct ggagtcaacc ttgataaata tggcagacca 5460 attaagaaag gtttcctctc tttcaggaaa tagtttccac agtactcaac tgtgctcgtt 5520 ggtagtgata cgaggcgaaa atcaaaacta cccttatcta gctttattaa tagttagcta 5580 ataaagtcaa gccagagaca ttaaactgga acgactccgc ttcgcggata ggcaacgagt 5640 gttctacgct gggagaaatc cccacggcac ttcggtgt 5678 //