ID JN006806; SV 1; circular; genomic DNA; STD; VRL; 7462 BP. XX AC JN006806; XX DT 26-OCT-2011 (Rel. 110, Created) DT 05-APR-2013 (Rel. 116, Last updated, Version 3) XX DE Citrus yellow mosaic virus isolate ROL, complete genome. XX KW . XX OS Citrus yellow mosaic virus OC Viruses; Ortervirales; Caulimoviridae; Badnavirus. XX RN [1] RP 1-7462 RX DOI; 10.1007/s11262-012-0808-8. RX PUBMED; 22926812. RA Anthony Johnson A.M., Borah B.K., Sai Gopal D.V., Dasgupta I.; RT "Analysis of full-length sequences of two Citrus yellow mosaic badnavirus RT isolates infecting Citrus jambhiri (Rough Lemon) and Citrus sinensis L. RT Osbeck (Sweet Orange) from a nursery in India"; RL Virus Genes 45(3):600-605(2012). XX RN [2] RP 1-7462 RA Anthony Johnson A.M., Borah B.K., Dasgupta I., Sai Gopal D.V.R.; RT ; RL Submitted (20-MAY-2011) to the INSDC. RL Department of Virology, Sri Venkateswara University, Tirupati, Andhra RL Pradesh 517502, India XX DR MD5; cc364fa1c46e415b4696fab000d69e26. XX FH Key Location/Qualifiers FH FT source 1..7462 FT /organism="Citrus yellow mosaic virus" FT /host="Citrus jambhiri (rough lemon)" FT /isolate="ROL" FT /mol_type="genomic DNA" FT /country="India:Pichatur, A.P." FT /collection_date="2006" FT /db_xref="taxon:174178" FT CDS 231..662 FT /codon_start=1 FT /product="ORF I" FT /note="unknown" FT /db_xref="InterPro:IPR010746" FT /db_xref="UniProtKB/TrEMBL:G8FL54" FT /protein_id="AER00542.1" FT /translation="MSRIWEEAIQRWYETSHTANLEYLDLASKPKVSNSEISHNLAVVY FT DRLSLFSRVSIKNFESIQETLEKQDLRIQKLESSLKTLTSEFIAHKPLSKAEVKTLVTE FT IAKQPKLVEAQALQLTENLNQKLDRVEALISKVERWVHS" FT CDS 659..1072 FT /codon_start=1 FT /product="ORF II" FT /note="unknown" FT /db_xref="UniProtKB/TrEMBL:G8FL55" FT /protein_id="AER00543.1" FT /translation="MTYQATEKTPTYKRALAATEPINSPSLGFVNPEEYSGGMTGTKAL FT IKQNNLLIQLVVELSVNVNSLSEQVDQLAKQLGKQPQQGSSTTALPDDLVDKLRNLSLG FT TEKKKEKRGTFYAYKDPYLIYKEEVEKLKKQQQ" FT CDS 1069..6999 FT /codon_start=1 FT /product="ORF III" FT /note="polyprotein; contains movement protein, coat FT protein, protease, reverse transcriptase and RNAse H" FT /db_xref="GOA:G8FL56" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR001878" FT /db_xref="InterPro:IPR018061" FT /db_xref="InterPro:IPR021109" FT /db_xref="InterPro:IPR036875" FT /db_xref="UniProtKB/TrEMBL:G8FL56" FT /protein_id="AER00544.1" FT /translation="MSSSRARTVVEQLPPATTSRVEERDNTPLYDDQIRDYRQWQQRRH FT NMGRRWNQLIGRPYNQTLEQVVDPEVALQLSMQERARLVPAEVLYRSRSDDRHHQVYIH FT RSEEAILCVDGDQVDRLLIQPESAEQLNRSGMPFIHMGIVQVRIPILHRQHEGTTALVV FT FRDNRWQGDQSIFATMELDLTKGMQMVYIIPDTMMTVRDFCRNVQISILTKGYGNWQNG FT EANLLVTRGIVGRLSNTPNVAFAYQIQNVTDYLVSHGIQALPGRRYSAADVQGQQWFLR FT PSNIPAVPMAPTNVDTRNMIDGSISLRFNSYQPAPDPAPVAYNQHDEEIPPDEDEEQIR FT NHTIALWRENDEVWDTLGEPSGKFDFYVRYTRPAHALQDPAHIIATGWDDLDDNPSPSS FT PSNNIRTYQTPSPPSSSDEDDDMSYLQYLAQQSPVPPPTQDFTNPFSEGGGESTYPYPS FT FQPPFDLQSDDSYGTLATWSEYDAMSQTNSSPALSPSAKTVFDFDRYSHTTNEDDVVQS FT AWISENLFRENTGNGEVHNLVPPGPDTPRGDEVKGTQESMAHTVAVTTEGPKQEAEFDY FT PAFAKLQDYEKRSRPKPKTEKVLSSAISSYTPPSDTAMTPVAYPPAQNIASPSYNPSPQ FT IPMFEGYSPKRPHFKRDNHTFISLPSAQQNTGALFIMPQQIGLFHEVFTSWEAITKAYV FT AQQGITDPRDKAEFIENMSGPTEKIIWTQWRMGYADEYENLVTTADGREGTQNILSQMR FT RVFSLEDPATGSTAVQDEAYRDLERLTCDLVKHIVQYLNDFMRIAAKTGRMFIGPELSE FT KLWLKMPGDLGQRMKKAYEEKHPGNIVGVCPRILFAYKYLEGECKDAAFRRSLKNLSFC FT SSIPIPGYYGGRSSEKRYGIRRTTTYKGKPHNTHARIEKTKHLRNKKCKCYLCGEERHF FT ARECPNDRRNVKRVAMFEGLDLPDDCEIVSIDEGDPDSDAIFSISEGEETGAFEEQCFV FT FQEECNGTYWLGKRGGYQDLVQISKETYYCQHEWEENQPIDDPAHVRCYPCKRETTQRA FT RLHCKLCHITSCLMCGPTYFNKKITVQPIPQAPFNQKGLLQQQQEYIAWCNNEIARLKE FT EVAFYKQLAQERELQLQLEQSRKELAGADSRRRKDKGVVIDEGSCYFNPEETTRIVAHG FT DTQVTKTRPVRNMLYNMDVRMEIPGIPAFTVKTIHDTGATTCCIDSRSVPKDALEENSF FT VVNFSGINSKQQVKQKIKSGKMFINEHYFRIPYCYSFEMQIGDGIQLILGCNFIRSMYG FT GVRLEGNTITFYKQITSINTRLAAPLLKQDEEEKEEELNLQEHRLIQEMVAYSTERSFI FT HFQQKFAGIIQELKAQGYIGEEPMKYWTIKQVVCHLDIKNPDMVIEDRPLKHVTPQMEE FT SFRRHVEALLKIGAIRPSKSRHRTTAIIVNSGTSIDPITGKEVKGKERMVFNYKRLNDL FT TNKDQYSLPGIQTILQRLKGSTIFSKFDLKSGFHQVAMHPDSIEWTAFWVPSGLYEWLV FT MPFGLKNAPAVFQRKMDHCFKGTEAFIAVYIDDILVFSLTEWEHGEHLKIMLSICQKNG FT LILSPTEMIFAHVGIEFLGAIIHKGLIKLQPPIVQKLLTFTNKQLEEVKGLRSRLGLLI FT NYARSYIPHMGRLLSPLYAKVSPTGERRMNRQDWALIDRIRARVQNLPALELPPADCFI FT IIETVGCMDRWGGVCSWNVAQYDPRSSEKVCAYASGKFNPPKSTIDAVIRAVMNSLNNF FT KIYYLDKSSLCLRTDCQAIISFFNKSNVKMPSRFRWIAFTDLFTGLSIPVNLVHIDGQN FT NPLGDALSRLVTGFVVAEPQCQDSFQDDLGKLEAALQEKKEAPQAMHDEYVSLLIRSAD FT RITLSLYSMRDSSHSRIYSCRPGKEPMKALICEQKSCQSKGDLVSMRTVHSRSASNQQD FT NWWPSTSTNSATSGAKRQETTHMPINYPHAIWTTNSYVKWSSF" FT CDS 1973..2518 FT /codon_start=1 FT /product="ORF IV" FT /note="unknown" FT /db_xref="GOA:G8FL57" FT /db_xref="UniProtKB/TrEMBL:G8FL57" FT /protein_id="AER00545.1" FT /translation="MDPFLSDSIVINQLRIQHLLPIINMMRKYPLMKMKNRSVIIPLRY FT GVKMMRYGIHWVNLRVNLTFMFAIPDLHMLYKTLPILLLLVGMILMIILLHPVHPTIFV FT LTKPLPLLPLLTRMMICPTFNTLLSNHLSLLLHRILPILFRKVVGSLPTLTPHFSHHLT FT YNQMIHMVLWQLGVNMMP" FT CDS 3929..4240 FT /codon_start=1 FT /product="ORF V" FT /note="unknown" FT /db_xref="UniProtKB/TrEMBL:G8FL58" FT /protein_id="AER00546.1" FT /translation="MTVKSSLLMKEIQTVMLSSASQREKKLEHLKNSVLCSRKNVMEHT FT GLVREVDTRISCKFPKKPTIVSTNGRRINPLMIQRMFDVTLAKGKLLKELAYIVSYAT" FT CDS 6573..7037 FT /codon_start=1 FT /product="ORF VI" FT /note="unknown" FT /db_xref="UniProtKB/TrEMBL:G8FL59" FT /protein_id="AER00547.1" FT /translation="MSRLIPGRFREIGSSSSGEERGTASNARRICLPVDQISGPHYPLA FT ILYEGLVSQQNLLMQARQRTNEGLNLRTEVMPIQRRLSEYEDCALQECIQSARQLVALH FT QHKLSYIRSKATRDNAYADKLPTCNLDHEQLCEVVELLEGISERISDTAV" XX SQ Sequence 7462 BP; 2306 A; 1653 C; 1622 G; 1881 T; 0 other; tggtatcaga gcttggttgt gttcttacaa cgatgggagc ttaaaacctt ccattaggtc 60 tgaggaaaga gttaactgta tggtgtgttt agttcctatt tgtattgtta ttcctttgtt 120 cataatatag aaaacgatca tcgcgaaaag ggtgaaggca ctatatctgg cagcaagagg 180 agagtaagtc cagtgaaacc cttcgcatga cgctaaaggt gatctaatct atgtctagaa 240 tctgggaaga agcaatacaa agatggtatg agacatccca tacagccaat ctcgagtact 300 tagatctagc ttcaaaacca aaagtttcca attccgaaat ctcacacaac cttgcagtag 360 tttacgatcg tttgagtctt tttagccgtg tttccattaa gaatttcgaa agtatccaag 420 aaaccctaga aaagcaagac cttagaatcc aaaaacttga atccagtctg aaaaccctaa 480 ctagtgagtt tatagcccat aaacctttat ccaaagctga ggtgaaaacc ttagttacag 540 aaattgccaa acagccaaag cttgttgaag cacaagccct ccagcttaca gaaaacctga 600 accaaaagct tgatcgggta gaagccttga tatctaaggt agaacgttgg gttcattcat 660 gacctatcag gctactgaga aaaccccaac atacaagcgt gctcttgcgg caaccgagcc 720 tattaacagt ccatcacttg gatttgttaa cccagaggaa tattctggtg gtatgactgg 780 tactaaagct ctcattaagc aaaacaattt gcttattcag ctcgtagtag agctttctgt 840 caacgtcaac agtttgtcag aacaagttga tcagctagca aaacaacttg ggaaacaacc 900 tcagcaaggc tcatcaacaa cagccttacc tgacgatctt gttgacaaac tcagaaacct 960 ttctttaggt actgagaaga agaaggaaaa gcgtggtacc ttctacgctt acaaagaccc 1020 ctacttgatc tacaaggaag aagtagaaaa gctaaagaag cagcagcaat gagcagtagc 1080 cgagcaagaa ctgtggtaga acaacttcca cctgcaacta cgtcccgagt ggaggagcga 1140 gataacaccc ccctctatga tgatcaaata cgggattaca ggcagtggca gcagcggcgt 1200 cacaacatgg gaaggagatg gaatcaattg ataggtcgac cctacaatca gaccttggag 1260 caggtagtag atcctgaggt agctttacag ttatctatgc aggaacgtgc aaggctagta 1320 ccagcagagg tactttacag atcaaggagt gatgatcggc accatcaggt ctacatacac 1380 agatcagagg aggctatcct ttgtgttgac ggagatcaag ttgaccggtt actgatacaa 1440 ccggaaagtg ctgaacagct aaacaggagt ggtatgccct ttatccatat gggcatagtt 1500 caggttcgga tcccgatctt gcacagacag catgagggaa caacagccct tgtggtgttc 1560 agagataatc ggtggcaagg cgatcaatct atattcgcca ccatggaact tgatttgacc 1620 aaaggaatgc aaatggtata cataatccca gatacaatga tgacagtcag agacttctgc 1680 cggaatgttc aaatttccat attaacaaaa ggatatggga attggcagaa cggtgaggca 1740 aatttgcttg tcacaagggg aatcgttgga cggttatcta atacccctaa tgtggccttt 1800 gcctatcaga tccaaaatgt tacagattat ctagtcagtc atgggattca ggcgttgcca 1860 ggacgacgct attcagctgc agatgtacag ggccagcaat ggtttctacg accatccaat 1920 attccagcag ttccaatggc ccctactaac gtggatacac gtaacatgat agatggatcc 1980 atttctctca gattcaatag ttatcaacca gctccggatc cagcacctgt tgcctataat 2040 caacatgatg aggaaatacc ccctgatgaa gatgaagaac agatccgtaa tcataccatt 2100 gcgctatggc gtgaaaatga tgaggtatgg gatacactgg gtgaaccttc gggtaaattt 2160 gacttttatg ttcgctatac ccgacctgca catgctttac aagaccctgc ccatattatt 2220 gctactggtt gggatgatct tgatgataat ccttctccat ccagtccatc caacaatatt 2280 cgtacttacc aaaccccttc ccctccttcc tcttctgacg aggatgatga tatgtcctac 2340 cttcaatacc ttgctcagca atcacctgtc cctcctccta cacaggattt taccaatcct 2400 ttttcggaag gtggtgggga gtctacctac ccttacccct catttcagcc accatttgac 2460 ctacaatcag atgattcata tggtactttg gcaacttgga gtgaatatga tgccatgagc 2520 caaactaata gctcacctgc acttagtcct agtgcaaaaa ctgtttttga ttttgacagg 2580 tactcccaca caacaaatga agatgacgtg gttcaatcag cctggatttc tgaaaatcta 2640 tttcgtgaaa acaccggaaa cggcgaagtt cacaatcttg ttccgcctgg accggacacc 2700 cctcggggtg atgaggtcaa aggaacccaa gaatccatgg cccatactgt tgcagtaacc 2760 acagaaggac caaagcagga agctgagttt gactatccgg cctttgccaa attacaagac 2820 tatgaaaagc gcagcaggcc taagcccaaa actgagaaag tcctgtcttc agcgatttct 2880 tcatatactc caccaagtga tactgcaatg acacctgttg cgtacccccc agcgcagaat 2940 atagctagcc caagctacaa cccaagccca caaataccta tgtttgaagg ttacagccca 3000 aaaagacccc acttcaaaag ggataatcat acttttataa gccttccctc agcccaacaa 3060 aatactgggg ctttatttat catgcctcaa cagataggcc tgtttcatga ggtcttcacc 3120 tcttgggaag caattacaaa agcctatgtt gctcaacagg gtatcacaga ccctagagat 3180 aaggccgagt tcattgaaaa catgtcgggt ccaacagaga aaataatttg gactcaatgg 3240 cgtatgggct acgctgatga atatgagaac cttgtaacaa cagctgacgg acgtgagggt 3300 actcaaaata tactctccca gatgcgaagg gtcttttcat tggaagatcc agcaactggt 3360 tcaactgcag tccaagatga agcttacaga gacttggaga gactcacttg tgatttagtc 3420 aagcatatag tccaatactt gaatgacttt atgcgaattg cagcaaaaac tgggcgcatg 3480 ttcataggcc ccgaattgag tgaaaaacta tggctcaaaa tgccaggtga tctaggccaa 3540 aggatgaaga aggcctatga ggaaaaacat ccagggaaca tcgttggtgt gtgccctcgg 3600 atcttgttcg cttacaagta ccttgaaggc gagtgtaaag atgcagcgtt cagacgctcc 3660 ctgaagaact tatcattttg cagctcaatc cctatcccag gctattatgg tggtagaagt 3720 agtgagaagc gttatggtat aagacgcaca accacttaca aagggaaacc tcataacaca 3780 catgcaagaa ttgaaaagac aaaacatttg cgcaataaaa agtgcaagtg ttatctttgt 3840 ggcgaggaac gtcacttcgc acgggaatgt ccaaatgacc ggcgaaatgt gaagcgagtt 3900 gcaatgtttg aaggactaga tctccctgat gactgtgaaa tcgtctctat tgatgaagga 3960 gatccagaca gtgatgctat cttcagcatc tcagagggag aagaaactgg agcatttgaa 4020 gaacagtgtt ttgtgttcca ggaagaatgt aatggaacat actggcttgg taagagaggt 4080 ggataccagg atctcgtgca aatttccaaa gaaacctact attgtcagca cgaatgggag 4140 gagaatcaac ccattgatga tccagcgcat gttcgatgtt acccttgcaa aagggaaact 4200 actcaaagag ctcgcttaca ttgtaagcta tgccacataa catcctgtct tatgtgtggc 4260 cccacctatt tcaacaaaaa gatcactgtc cagccaatac ctcaagcacc cttcaaccaa 4320 aagggattgt tacaacagca acaggaatac atcgcctggt gcaataatga aattgccaga 4380 ttaaaggaag aagttgcttt ttacaagcag cttgcccagg agagagagtt gcaattacag 4440 ttagaacagt ctagaaagga gttagcagga gcagactctc gcaggcgaaa agacaaaggg 4500 gtagtaattg atgaagggtc atgctacttc aatccagagg aaacaaccag aatagttgct 4560 catggagata cacaggttac caaaactaga cctgtgagaa atatgttata caacatggat 4620 gtgcgaatgg agattccagg catcccagct tttacagtaa agacgattca tgacacagga 4680 gcgacaacct gctgcattga cagcaggagt gtgccaaaag atgctcttga agaaaattca 4740 tttgtggtta atttctctgg catcaactct aagcagcaag tcaagcagaa gattaaatct 4800 ggaaagatgt tcattaatga gcattatttc agaattccat attgctacag cttcgagatg 4860 caaattggtg atggcatcca actcattctc gggtgcaact tcatccgaag tatgtatggt 4920 ggtgttcgat tagaaggtaa tactataacc ttctacaaac agatcacaag tatcaacacc 4980 agactggctg cacctctcct taagcaggac gaagaggaga aagaagaaga gcttaaccta 5040 caagaacaca ggttaattca ggaaatggtt gcatactcta ctgagcggtc atttattcat 5100 ttccagcaaa aatttgcagg gattattcaa gaactaaaag cccagggata cattggggag 5160 gagcctatga aatattggac cataaaacaa gttgtttgcc atctggacat taaaaaccca 5220 gatatggtaa ttgaagatcg cccactgaag catgtaacac cccagatgga agaaagcttt 5280 cgcaggcatg tggaagcact gttaaaaatt ggtgcaatcc ggcccagtaa aagtcggcac 5340 aggacaacag ccattatagt taattctgga accagcattg atcctatcac aggaaaagaa 5400 gtaaaaggca aagagaggat ggtctttaat tataaaagat taaatgacct gaccaacaag 5460 gatcagtaca gtcttccagg aatccaaaca attctgcaaa ggttaaaggg gagtactata 5520 ttctccaaat ttgaccttaa aagtggcttt caccaggtag cgatgcatcc agattcaatc 5580 gaatggacag ctttttgggt gcccagcggt ctctatgaat ggttagttat gccattcgga 5640 ttaaagaatg ctccagcagt ttttcagagg aaaatggatc actgcttcaa agggacagag 5700 gcctttatcg ctgtttatat cgatgacatc ctagtattct cactcactga gtgggaacat 5760 ggggagcact taaagatcat gctctccatc tgccaaaaaa atgggcttat tctgagccca 5820 acagaaatga tatttgccca tgtcgggatt gaatttcttg gggcaatcat tcacaaaggg 5880 cttatcaagc tacagccccc cattgttcaa aagttgctca cttttaccaa caagcaactc 5940 gaggaggtta aagggcttag atcacggcta ggcctgctaa taaactatgc aagaagctac 6000 attccccaca tgggccgtct acttagccca ttatatgcca aagtcagccc aactggtgag 6060 cggagaatga acaggcaaga ttgggccctg attgacagaa ttagagcccg tgtccaaaat 6120 ttaccagccc tggaattacc acctgcggac tgtttcatca tcatcgaaac ggttggatgc 6180 atggatcgct ggggaggtgt ctgctcatgg aacgtagcgc aatacgaccc tcgaagttca 6240 gaaaaggttt gtgcttatgc aagtgggaag ttcaacccac caaagtcaac aatcgatgcg 6300 gtgatacgtg cagtgatgaa cagcctcaac aatttcaaaa tctattacct agacaaatcc 6360 agcttatgtt taaggactga ctgtcaagct attattagct tctttaataa gtccaatgtt 6420 aagatgccgt ctaggtttag atggattgct ttcacagatc tctttactgg tcttagtatc 6480 cctgtaaatc tagtgcacat tgatggacag aataaccctc tgggtgatgc tctgtccaga 6540 ttggtcactg gatttgttgt tgcagaacca caatgtcaag actcattcca ggacgattta 6600 gggaaattgg aagcagctct tcaggagaag aaagaggcac cgcaagcaat gcacgacgaa 6660 tatgtctccc tgttgatcag atcagcggac cgcattaccc tctcgctata ctctatgagg 6720 gactcgtctc acagcagaat ttactcatgc aggccaggca aagaaccaat gaaggcctta 6780 atttgcgaac agaagtcatg ccaatccaaa ggcgacttag tgagtatgag gactgtgcac 6840 tccaggagtg catccaatca gcaagacaac tggtggccct ccaccagcac aaactcagct 6900 acatcaggag caaagcgaca agagacaacg catatgccga taaactaccc acatgcaatc 6960 tggaccacga acagctatgt gaagtggtcg agcttttaga aggaatctca gaaaggatca 7020 gcgatacagc tgtctagaac agctggcttc aataatggag catggtggac ccccgcaata 7080 atccaaagtt tggtgtgctt ttactttctg ctttcatcct tatgcttttg taagtcccct 7140 atcctcgcgc ccgcatttat gtcaagtcag atgcttatcc tttaagcctc aattccttta 7200 tccgcatcca cctctagttc ccctccattc gctaaagcgt ccacttcatt acccggttct 7260 ctaaattgcc tatataacga tatgccatag ccttgttttt gcaagtcagg aatacctgag 7320 cataacttgg ctaagcaaaa gaattgtaag ttttctttct aagctttttt gtttgtaagc 7380 ttttcagttc ttaataaatc tctcgttaat cgttgtgaac acatcttgtc ttttgagtat 7440 ttgtttgtgt cctgtcctcg aa 7462 //