ID JN006805; SV 1; circular; genomic DNA; STD; VRL; 7544 BP. XX AC JN006805; XX DT 26-OCT-2011 (Rel. 110, Created) DT 05-APR-2013 (Rel. 116, Last updated, Version 3) XX DE Citrus yellow mosaic virus isolate SO JNTU, complete genome. XX KW . XX OS Citrus yellow mosaic virus OC Viruses; Ortervirales; Caulimoviridae; Badnavirus. XX RN [1] RP 1-7544 RX DOI; 10.1007/s11262-012-0808-8. RX PUBMED; 22926812. RA Anthony Johnson A.M., Borah B.K., Sai Gopal D.V., Dasgupta I.; RT "Analysis of full-length sequences of two Citrus yellow mosaic badnavirus RT isolates infecting Citrus jambhiri (Rough Lemon) and Citrus sinensis L. RT Osbeck (Sweet Orange) from a nursery in India"; RL Virus Genes 45(3):600-605(2012). XX RN [2] RP 1-7544 RA Anthony Johnson A.M., Borah B.K., Dasgupta I., Sai Gopal D.V.R.; RT ; RL Submitted (20-MAY-2011) to the INSDC. RL Department of Virology, Sri Venkateswara University, Tirupati, Andhra RL Pradesh 517502, India XX DR MD5; fc64f3de8175936f8d2280fd6edfb93e. XX FH Key Location/Qualifiers FH FT source 1..7544 FT /organism="Citrus yellow mosaic virus" FT /host="Citrus sinensis (L) Osbeck (sweet orange)" FT /isolate="SO JNTU" FT /mol_type="genomic DNA" FT /country="India:JNTU Pulivendula A.P." FT /collection_date="2007" FT /db_xref="taxon:174178" FT CDS 231..662 FT /codon_start=1 FT /product="ORF I" FT /note="unknown" FT /db_xref="InterPro:IPR010746" FT /db_xref="UniProtKB/TrEMBL:G8FL48" FT /protein_id="AER00536.1" FT /translation="MSRIWEEAIQRWYETSHTANLEYLDLASKPKVSNSEISHNLAVVY FT DRLSLFSRVSIKNFESIQETLEKQDLRIQKLESSLKTLTSEFIAHKPLSKSEVKALVTE FT IAKQPKLVEAQALQLTETLDQKLDRVETLISKVERWVHS" FT CDS 659..1072 FT /codon_start=1 FT /product="ORF II" FT /note="unknown" FT /db_xref="UniProtKB/TrEMBL:G8FL55" FT /protein_id="AER00537.1" FT /translation="MTYQATEKTPTYKRALAATEPINSPSLGFVNPEEYSGGMTGTKAL FT IKQNNLLIQLVVELSVNVNSLSEQVDQLAKQLGKQPQQGSSTTALPDDLVDKLRNLSLG FT TEKKKEKRGTFYAYKDPYLIYKEEVEKLKKQQQ" FT CDS 1069..7017 FT /codon_start=1 FT /product="ORF III" FT /note="polyprotein; contains movement protein, coat FT protein, protease, reverse transcriptase and RNAse H" FT /db_xref="GOA:G8FL50" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR001878" FT /db_xref="InterPro:IPR001969" FT /db_xref="InterPro:IPR002156" FT /db_xref="InterPro:IPR018061" FT /db_xref="InterPro:IPR021109" FT /db_xref="InterPro:IPR036875" FT /db_xref="InterPro:IPR041373" FT /db_xref="UniProtKB/TrEMBL:G8FL50" FT /protein_id="AER00538.1" FT /translation="MSSSRARTVVEQLPPATTSRVEERDNTPLYDDQIRDYRQWQQRRH FT NMGRRWNQLIGRPYNQTLEQVVDPEVALQLSMQERARLVPAEVLYRSRSDDRHHQVYIH FT RSEEAILCVDGDQVDRLLIQPESAEQLNRSGMPFIHMGIVQVRIQILHRQHEGTTALVV FT FRDNRWQGDQSIFATMELDLTKGMQMVYIIPDTMMTVRDFCRNVQISILTKGYGNWQNG FT EANLLVTRGIVGRLSNTPNVAFAYQIQNVTDYLVSHGIQALPGRRYSAADVQGQQWFLR FT PSNIPAVPMAPTNVGTRNMIDGSISLRFHSYQPAPDPTPVAYNQHDEEVPPDEDEEQIR FT NHTIALWREDDEEWDTLGEPSGKFDFYVRYTRPTHALQDPAHIVATGWDDLGNDPSPSS FT PPNNILTYLTPSSSSDEDDDMSYLQYLAQQSPVPSTTQDFTNPFSEGGGESTYPYPSFQ FT PPFDLQSDDSYDTLATWSEYDAMSQSNSPSSYSDAIQHLNFQHPSADTVLDFDRYSFTT FT SEDDVVQSAWISENLFRENTGNGEVHNLVPPRPDTPRGDEVKGTQESMAHTVAVTTEES FT KHEAEFDYPAFARLQSHEESGRPKPKTEKVLSSAISSYTPPTDTAMTPVAYPPAQNIAS FT PSYNPSPQMPMFEGYYPKRPNFKRDNHAFISLPSAQQNTGALFIMPQQIGLFHEVFTSW FT EAITKAYVAQQGITDPRDKAEFIENMGPTEKIIWTQWRMGYADEYENLVTTADGREGTQ FT NILSQMRRVFSLEGPTTGSTAVQDEAYRDLERLTCDSVKHIVQYLNDFMRIAAKTGRMF FT IGPELSEKLWLKMPGDLGQRMKKAYEEKHPGNIVGVCPRILFAYKYLEGECKDAAFRRS FT LKNLSFCSSIPIPGYYGGKSGEKRYGVRRTTTYKGKPHSTHARIEKTKHLRNKKCKCYL FT CGEEGHFARECPNDRRNVKRVAMFEGLGLPDDCEIVSIDEGDPDSDAIFSISEGEEAGT FT LEEQCFVFQEECNGTYWLGKRGGYQDLVQISKEIYYCQHEWEENQPINDPAHVRCYPCK FT RETTQRARLHCKLCHITSCLMCGPTYFNKRITVQPMPQAPFNQKGLLQQQQEYIAWCNN FT EIARLKEEVAFYKQLAQERELQLQLEQSRKELAGVDSRRRKDKGVVIDEGSCYFNPEET FT TRIIAHGDTQVTKTRPVKNMLYNMDVRMEIPGIPAFTVKAILDTGATTCCIDSRSVPKD FT ALEENSFVVNFSGINSKQQVKQKLKAGKMFINEHYFRIPYCYSFVMQIGDGIQLILGCN FT FIRSMYGGVRLEGNTITFYKQITSINTRLAAPLFKQEEEEKEEELNLEEHRLIQEMVAY FT STERPFVQFQQKFAGLIQDLKAQGYIGEEPMKYWAKNQVVCHLDIKNPDMVIEDRPLKH FT VTPQMEESFRKHVEALLKIGAIRPSKSRHRTTAIIANSGTSIDPITGKEVKGKERMVFN FT YKRLNDLTNKDQYSLPGIQTILQRLKGSTIFSKFDLKSGFHQVAMHPDSIEWTAFWVPS FT GLYEWLVMPFGLKNAPAVFQRKMDHCFKGTEAFIAVYIDDIQVFSKTEQDHEEYLQIML FT SICQKNGLILSPTKMKIAQAEIGFLGAIIHKGLIKLQPHIVQKLLTFTNKQLEEVKGLR FT SWLGLLNYARSYIPHMGRLLSPLYAKVSPTGERRMNRQDWALIDKIRAQVQNLPALELP FT PADCFIIIETDGCMDGWGGVCKWKVAQYDPRSSERVCAYASGKFNPPKSTIDAEIHAVM FT NSLNNFKIYYLDKSSLCLRTDCQAIISFFNKSNVNKPSRVRWIAFTDFLTGLGIPVNIE FT HIDGKNNHLADALSRLVTGFVFAEPQCQDKFQDDLGKLEAALQEKKEAPQAMHVEYVSL FT LIRSADRITRSLCFMRDSSHSRICSCRPGKEPMKALICEQKSCQSKGDLGNTRTVHSKS FT AFNQQDNWWPSTSTNSLTSEAKLQGTTHMPIGYPHAIGTTSNCVKWSSC" FT CDS 1973..2512 FT /codon_start=1 FT /product="ORF IV" FT /note="unknown" FT /db_xref="GOA:G8FL51" FT /db_xref="UniProtKB/TrEMBL:G8FL51" FT /protein_id="AER00539.1" FT /translation="MDLFLLDSTVTNQLQIQPLLLIISMMRKYPLMKMKSRSVIIPSLY FT GGKMTRNGIHLVNLRANLIFMSVIPDLHMPYKILLILLLLDGMTLVMIHPPQVLLIISL FT LTSPLLPLLMRMMTCPIFNTLLNNHLSLLLPRISPILFRKVVGNLPTLTPHFNHHSTFN FT QMTHMILWQLGVNMML" FT CDS 3974..4261 FT /codon_start=1 FT /product="ORF V" FT /note="unknown" FT /db_xref="UniProtKB/TrEMBL:G8FL52" FT /protein_id="AER00540.1" FT /translation="MKVIQIVTPSSVFPKEKKLELLRNNVLYSRKNAMEHIGLVKEVDI FT RISCKSLRRSTIASTNGRRINPLMTQHMFGVTLARGKPLRELAYIASYAT" FT CDS 6591..7055 FT /codon_start=1 FT /product="ORF VI" FT /note="unknown" FT /db_xref="UniProtKB/TrEMBL:G8FL53" FT /protein_id="AER00541.1" FT /translation="MSRQVPGRFREVGSSSSGEERGSASNARRICLPVDQISGPHYPLA FT LLYEGLVSQQNLLMQARQRTNEGLNLRTEVMPIQRRLGEYEDCALQECIQSARQLVALH FT QHKLAYIRGKATRDNAYADRLPSCNRDHEQLCEVVELLEGISERISDTAV" XX SQ Sequence 7544 BP; 2320 A; 1657 C; 1662 G; 1905 T; 0 other; tggtatcaga gcttggttgt gttcttacaa cgatgggagc ttaaaacctt ccattaggtc 60 tgaggaaaga gttaactgta tggtgtgttt agttcctatt tgtattgtta ttcctttgtt 120 cataatatag aaaacgatca tcgcgaaaag ggtgaaggca ctatatctgg cagcaagagg 180 agagtaagtc cagtgaaacc cttcgcatga cgctaaaggt gatctaatct atgtctagaa 240 tctgggaaga agcaatacaa agatggtatg agacatccca tacagccaat ctcgagtact 300 tagatctagc ttcaaaacca aaagtttcca attccgaaat ctcacacaac cttgcagtag 360 tttacgatcg tttgagtctt tttagccgtg tttccattaa gaatttcgaa agtatccaag 420 aaaccctaga aaagcaagac cttagaatcc aaaaacttga atccagtctg aaaaccctaa 480 ctagtgagtt tatagcccat aaacctttgt ccaaaagtga ggtaaaagcc ttagtcacag 540 aaattgccaa acagccaaag cttgttgaag cacaagccct ccagcttaca gaaacacttg 600 accaaaagct tgatcgggta gagaccttga tatctaaggt agaacgttgg gttcattcat 660 gacctatcag gctactgaga aaaccccaac atacaagcgt gctcttgcgg caaccgagcc 720 tattaacagt ccatcacttg gatttgttaa cccagaggaa tattctggtg gtatgactgg 780 tactaaagct ctcattaagc aaaacaattt gcttattcag ctcgtagtag agctttctgt 840 caacgtcaac agtttgtcag aacaagttga tcagctagca aaacaacttg ggaaacaacc 900 tcagcaaggc tcatcaacaa cagccttacc tgacgatctt gttgacaaac tcagaaacct 960 ttctttaggt actgagaaga agaaggaaaa gcgtggtacc ttctacgctt acaaagaccc 1020 ctacttgatc tacaaggaag aagtagaaaa gctaaagaag cagcagcaat gagcagtagc 1080 cgagcaagaa ctgtggtaga acaacttcca cctgcaacta cgtcccgagt ggaggagcga 1140 gataacaccc ccctctatga tgatcaaata cgggattaca ggcagtggca gcagcggcgt 1200 cacaacatgg gaaggagatg gaatcaattg ataggtcgac cctacaatca gaccttggag 1260 caggtagtag atcctgaggt agctttacag ttatctatgc aggaacgtgc aaggctagta 1320 ccagcagagg tactttacag atcaaggagt gatgatcggc accatcaggt ctacatacac 1380 agatcagagg aggctatcct ttgtgttgac ggagatcaag ttgaccggtt actgatacaa 1440 ccggaaagtg ctgaacagct aaacaggagt ggtatgccct ttatccatat gggcatagtt 1500 caggttcgga tccagatctt acacagacag catgagggaa caacagccct tgtggtgttt 1560 agagacaatc ggtggcaagg agaccagtca atatttgcca ccatggagct tgatttaact 1620 aaaggtatgc agatggtgta cataatcccg gacaccatga tgacagtcag agacttctgt 1680 cggaatgttc aaatttccat attaacaaaa ggatatggga attggcagaa tggcgaggca 1740 aatctgcttg ttacaagggg aattgttgga cggttatcaa atacccctaa tgtggccttt 1800 gcctatcaga tccaaaatgt taccgactac ttggtcagtc atggaattca agccctgcca 1860 ggacggcgat attctgctgc agatgtacag ggccaacaat ggttcctaag accatccaac 1920 atcccagcag tcccaatggc ccccaccaac gtgggtacaa gaaacatgat tgatggatct 1980 atttctctta gattccacag ttaccaacca gctccagatc caacccctgt tgcttataat 2040 cagcatgatg aggaagtacc ccctgatgaa gatgaagagc agatccgtaa tcataccatc 2100 gctttatggc gggaagatga cgaggaatgg gatacacttg gtgaaccttc gggcaaattt 2160 gatttttatg tccgttatac ccgacctaca catgccctac aagatcctgc tcatattgtt 2220 gctactggat gggatgacct tggtaatgat ccatccccct caagtcctcc taataatatc 2280 cttacttacc tcaccccttc ttcctcttct gatgaggatg atgacatgtc ctatcttcaa 2340 taccttgctc aacaatcacc tgtcccttct actacccagg atttcaccaa tcctttttcg 2400 gaaggtggtg gggaatctac ctacccttac ccctcatttc aaccaccatt cgaccttcaa 2460 tcagatgact catatgatac tttggcaact tggagtgaat atgatgctat gagtcaatca 2520 aacagtcctt catcatactc agatgctatt caacatctta atttccagca tccaagtgca 2580 gatactgtcc ttgattttga cagatattct tttacaacaa gtgaggatga cgtggttcaa 2640 tcagcctgga tctctgaaaa tctatttcgt gaaaacaccg gaaacggtga agttcacaat 2700 cttgttccac ctagaccgga cacccctcgg ggtgatgagg ttaaaggaac tcaggaatcc 2760 atggcccata ctgttgcagt aaccacagaa gaatcaaaac atgaggctga atttgactat 2820 ccggcttttg ccagattaca atcccatgaa gagtcagggc ggcccaaacc caaaactgag 2880 aaagtcttat cctcagcaat ttcctcatat accccaccaa cggatactgc aatgacacct 2940 gttgcgtacc ccccagccca aaatatagcc agcccaagtt acaatccaag cccacaaatg 3000 cccatgttcg aagggtatta tcccaagagg ccaaatttca agagggataa tcatgccttt 3060 attagtcttc cctcagctca acaaaatact ggggctttat tcattatgcc tcaacaaatt 3120 ggcctgtttc atgaggtttt tacttcatgg gaagctataa caaaagccta tgttgctcaa 3180 cagggtatca cagacccaag ggataaggcc gagttcattg aaaacatggg tccaacagaa 3240 aagataattt ggactcaatg gcgtatgggc tacgccgatg aatatgagaa ccttgttaca 3300 actgctgatg gtcgtgaggg tactcaaaat atactctctc aaatgcgaag ggtcttttcc 3360 ttagaaggtc caaccacagg ttcaactgca gtccaagatg aagcctacag agacttggag 3420 aggcttactt gtgattctgt taagcatata gtccaatact taaatgactt tatgcggatt 3480 gcagcaaaga ctgggcgcat gttcataggc ccagaattga gtgaaaaatt atggcttaaa 3540 atgccaggtg acctaggcca aagaatgaag aaggcctatg aggaaaaaca tccagggaac 3600 attgttggtg tttgccctcg gattctgttt gcttataagt accttgaagg cgaatgcaaa 3660 gatgcagcgt tcagacgctc cctgaaaaat ctatcctttt gcagctcaat ccctatccca 3720 ggctactacg gtggtaaaag tggagagaag cgttatggtg taaggcgcac aaccacttat 3780 aagggaaagc ctcatagcac ccatgcaagg attgaaaaga caaaacattt gcgcaataaa 3840 aagtgcaagt gttatctgtg tggggaagaa ggtcacttcg cccgggaatg tccaaatgac 3900 cggcgaaatg tgaaacgagt tgcaatgttc gaaggtttag gcctcccaga tgactgtgag 3960 atagtctcca tcgatgaagg tgatccagat agtgacgcca tcttcagtat ttccgaagga 4020 gaagaagctg gaactcttga ggaacaatgt tttgtattcc aggaagaatg caatggaaca 4080 tattggcttg gtaaaagagg tggatatcag gatctcgtgc aaatctctaa ggagatctac 4140 tattgccagc acgaatggga ggagaatcaa cccattaatg acccagcaca tgttcggtgt 4200 tacccttgca agagggaaac cactcagaga gctcgcttac attgcaagct atgccacata 4260 acatcttgcc ttatgtgtgg ccccacctat ttcaacaaaa ggattactgt ccagccaatg 4320 cctcaagcac ccttcaacca aaagggattg ttacagcaac agcaggagta catagcctgg 4380 tgcaataatg aaattgccag gttgaaggaa gaagttgctt tttacaagca gctcgcccag 4440 gagagagaat tgcagttgca acttgagcaa tcaaggaagg agctagcagg agtagactct 4500 cgcaggcgaa aagacaaagg agtagtaatt gatgaagggt catgctactt caatcctgaa 4560 gaaacaacca ggataattgc tcacggtgac acacaagtta ccaaaactcg accagtgaag 4620 aatatgctct acaacatgga tgtgcgaatg gaaattccag gcatcccagc ttttacagta 4680 aaggcgattc ttgacacagg agcaacaacc tgctgtattg acagcagaag tgtaccaaaa 4740 gatgcccttg aagagaattc atttgtggta aacttctcag gcatcaattc caagcagcaa 4800 gtcaagcaga agcttaaagc tggaaaaatg ttcatcaatg agcattactt ccggatccca 4860 tattgttaca gctttgtgat gcaaattggt gatggcatcc aacttatcct tgggtgcaac 4920 tttatacgaa gtatgtacgg tggtgtacga ttagaaggta atactataac cttctacaag 4980 cagataacaa gtatcaacac caggcttgct gcacctctct ttaagcaaga agaagaggag 5040 aaagaagaag aactcaacct ggaagagcat aggttgattc aagaaatggt tgcatactcc 5100 actgagcggc catttgttca attccaacaa aagtttgcag ggcttattca agacttaaaa 5160 gcccagggat acattgggga agagcctatg aagtattggg ccaaaaacca agttgtttgc 5220 catctggaca ttaaaaaccc agatatggta attgaagatc gcccactgaa gcatgtgaca 5280 ccccagatgg aagaaagctt tcgcaagcat gtggaagccc tgttaaaaat aggagcaatc 5340 cggcccagta aaagtcgaca cagaaccaca gctataatag ccaactctgg aaccagcata 5400 gaccctatca cagggaagga ggttaaggga aaggagcgaa tggtctttaa ctataaaagg 5460 ttaaatgacc taactaataa agatcagtac agccttcctg gaatccagac gatcctgcag 5520 agattaaagg ggagcacaat attttccaaa ttcgacctaa aaagtggctt tcatcaggta 5580 gcaatgcatc cagattcaat agaatggaca gctttttggg tgcccagcgg tctttatgaa 5640 tggttagtta tgccattcgg attaaagaat gccccagcag tttttcagag gaaaatggat 5700 cactgtttca aaggcacgga ggcctttatt gccgtctaca tcgacgacat ccaagtattc 5760 tcaaagactg aacaggatca tgaggagtat ttacagatta tgctctctat ctgtcaaaag 5820 aatgggctta tcctaagccc aacaaagatg aaaattgccc aagctgaaat tggattcctt 5880 ggggcaatca ttcacaaagg gcttatcaag ctgcagcccc acattgttca aaagttgctc 5940 acttttacca acaagcaact tgaggaggtt aaagggctta gatcatggct aggtctgcta 6000 aactatgcaa gaagctatat tccccacatg ggccgtctac ttagcccatt atatgccaaa 6060 gtcagcccaa ctggtgagcg tagaatgaac aggcaagatt gggccctaat tgacaaaata 6120 agagcccaag tccaaaatct accagccctg gaattaccac ctgcagactg tttcatcatc 6180 atcgaaacgg atggatgcat ggatggttgg ggaggtgtct gcaaatggaa agtagcgcaa 6240 tacgaccctc gaagttcaga aagggtttgt gcttatgcaa gtgggaagtt caacccacca 6300 aaatcaacaa ttgatgcgga gatacatgca gtgatgaaca gcctcaacaa cttcaaaatc 6360 tattacctag acaagtccag tttatgtttg aggactgact gtcaagctat tattagcttc 6420 tttaataagt ccaatgttaa caaaccgtct agggttagat ggattgcttt cacagatttc 6480 cttactggtc taggaatccc tgtaaatata gagcacatag atggaaaaaa taaccatctg 6540 gctgatgctc tgtccagatt agtaactggt tttgtttttg cagaaccaca atgtcaagac 6600 aagttccagg acgatttagg gaagttggaa gcagctcttc aggagaagaa agaggctccg 6660 caagcaatgc acgtagaata tgtctccctg ttgatcagat cagcggaccg cattacccgc 6720 tcgctctgct ttatgaggga ctcgtctcac agcagaattt gctcatgcag gccaggcaaa 6780 gaaccaatga aggccttaat ctgcgaacag aagtcatgcc aatccaaagg cgacttgggg 6840 aatacgagga ctgtgcactc caagagtgca ttcaatcagc aagacaactg gtggccctcc 6900 accagcacaa actcgcttac atcagaggca aagctacaag ggacaacgca tatgccgata 6960 ggctaccctc atgcaatcgg gaccacgagc aactgtgtga agtggtcgag ctgttagaag 7020 gaatctcgga aagaatcagc gatacagctg tctagacagc tggcttcaat tatggagcgt 7080 gatggacccc cccgcaataa tccaaagttt ggtgtgcttc tagtagtgcg tctttatgga 7140 ccactacttt tgtaataatt gatgcttttt gtagtgcgct cttagtacgc tctactttat 7200 gcttttgtaa gtgcgctgta agtgcgcctg tctttcttca gatgcttatc ctttaagcat 7260 cttttgcttt ttgcgtggca tcctttagtt cacaatttaa agaatgacga tggggcccaa 7320 gatgtgcacc cggttctcta aattgcttat ataaggatat gccatagcct tgtttttgca 7380 agtcaggaac tcacctgagc ataacttggc taagcaaaag aatttgtaag ttttacagct 7440 ttcgctttct gtttgtaagc tttcagttct taataaatct ctcgttaatc gttgtgaaca 7500 catcttcttt tgttattttt gtgttttcga tccctctccg ttta 7544 //