ID JF968121; SV 1; linear; genomic RNA; STD; VRL; 3817 BP. XX AC JF968121; XX DT 01-JUN-2012 (Rel. 113, Created) DT 09-NOV-2012 (Rel. 114, Last updated, Version 3) XX DE Grapevine fanleaf virus isolate SAPCS3 segment RNA2, complete sequence. XX KW . XX OS Grapevine fanleaf virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Nepovirus. XX RN [1] RP 1-3817 RX DOI; 10.1007/s11262-012-0765-2. RX PUBMED; 22669541. RA Lamprecht R.L., Maree H.J., Stephan D., Burger J.T.; RT "Complete nucleotide sequence of a South African isolate of Grapevine RT fanleaf virus"; RL Virus Genes 45(2):406-410(2012). XX RN [2] RP 1-3817 RA Lamprecht R.L., Maree H.J., Stephan D., Burger J.T.; RT ; RL Submitted (16-MAY-2011) to the INSDC. RL Genetics, Stellenbosch University, Private bag x1, Matieland 7602, RL Stellenbosch, Western Cape 7602, South Africa XX DR MD5; 2c06aab1917d61e74ade130a42140aed. XX FH Key Location/Qualifiers FH FT source 1..3817 FT /organism="Grapevine fanleaf virus" FT /segment="RNA2" FT /host="Vitis vinifera cultivar Cabernet Sauvignon" FT /isolate="SAPCS3" FT /mol_type="genomic RNA" FT /country="South Africa" FT /db_xref="taxon:12274" FT CDS 273..3605 FT /codon_start=1 FT /product="polyprotein P2" FT /db_xref="GOA:I3QD33" FT /db_xref="InterPro:IPR005054" FT /db_xref="InterPro:IPR005305" FT /db_xref="InterPro:IPR005306" FT /db_xref="InterPro:IPR021081" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:I3QD33" FT /protein_id="AFI71814.1" FT /translation="MGKFYYSNRRLACWAAGKNPHLGGSVEQWLAAISTDSSFRQTVKE FT DVQENREQPTAVRMFSWKVGFGPIDNPEKCDWHFVLTGERPAQPHRPAKVDEVVVVPQS FT RKVVIPSPPPSPAPYFRAVGAFAPTRSGFIRATVERLTREREESRAAALFAELPLEYPQ FT GAPLKLSLAMKFAMLKHTTWRKWYDASDERLSEAHPGGPCLPPPPPIQSPPSFRERVRE FT FCRMKSCAKAFSLETSLGLNKAWVGSIDIPSTSVCCADGRTTGGQTIAQEADPLQHRVS FT TSVAPGRAQWISERRQALRRREQANSLQGLAAQTDMTFEQARNAYLGAADMIEQGLPLL FT PPLRSAYAPRGLWRGPSTRANYTLDFRLNGIPTGTNTLEILYNPVSEEEMEEYRDRGMS FT AVVIDALEIAINPFGMPGNPTDLTVVATYGHERDMTRAFIGSASTFLGNGLARAIFFPG FT LQYSQEEPRRESIIRLYVASTNATVDTDSVLAAISVGTLRQHVGSMHYRTVASTVHQAQ FT VQGTTLRATMMGNTVVVSPEGSLVAGTPEARVEIGGGSSIRMVGPLQWESVEEPGQTFS FT IRSRSRSVRIDRNVDLPQLEAEPRLSSTVRGLAGRGVIYIPKDCQANRYLGTLNIRDMI FT SDFKGVQYEKWITAGLVMPTFKIVIRLPANAFTGLTWVMSFDAYNRITSRITASADPVY FT TLSVPHWLIHHKLGTFSCEVNYGELCGHAMWFKSTTFESPRLHFTCLTGNNKELAADWQ FT AVVELYAELEEATSFLGKPTLVFDPGVFNGKFQFLTCPPIFFDLTAVTALRSAGLTLGQ FT VPMVGTTKVYNLNSTLVSCVLGMGGTIRGRVHICAPIFYSIVLWVVSEWNGTTMDWNEL FT FKYPGVYVEEDGFFEVKIRSPYHRTPAKLLAGQSQRDMSSLNFYAIAGPIAPSGETARL FT PIVVQIDEIVRPDLSLPSFEDDYFVWVDFSEFTLDKEEIEIGSRFFDFTSSTCRVSMGE FT NPFAAMIACHGLHSGVLDLKLQWSLNTEFGKSSGSVTITKLVGDKAMGLDGPSQVFAIQ FT KLEGVTDLLIGNFAGANPNSHFSLYSRWMAIKLDQAKSIKVLRVLCKPRPGFSFYGRTS FT FPV" XX SQ Sequence 3817 BP; 922 A; 815 C; 975 G; 1105 T; 0 other; atgaaaaatc tgctggggtt ttcatattac tgcaacccag cttttctttc cgtcaagagt 60 ttaagaaact caccttcttt ccttctgcca atccgttaag agcggaaatt taaccaaacc 120 gttaagagcg gtaccagagc gaagagttta agaaactcat cattgctttt tcaccttttt 180 tctttgcgct ttatttattt agcattgttt taagtttgtt taaaaagctt ttgttttgca 240 gttttggttt ctttttttct ttttttgccc gtatgggcaa attttattat tccaacaggc 300 gacttgcctg ttgggctgct gggaagaacc ctcatttggg gggttctgtc gaacaatggc 360 tggcggccat tagtactgat tcctccttcc gccaaactgt taaggaggat gtgcaagaaa 420 atagagaaca gccaactgct gttcggatgt tttcttggaa ggttgggttc gggcccattg 480 acaatcccga gaaatgcgat tggcattttg tccttacggg cgaaaggcca gcgcagccgc 540 accgaccggc taaagtcgat gaggttgtgg tggtgccaca atcgaggaag gtggtgatac 600 cgtcaccacc cccttctcca gctccctatt ttagggctgt tggggctttt gcacctacca 660 ggtccgggtt tatacgggcc actgtggaaa gactcacccg ggaacgggaa gagtcgagag 720 ctgcggcact ctttgccgaa ctgccattgg agtacccaca gggtgctcct ttgaagttga 780 gcctggcaat gaaatttgcc atgctcaaac ataccacttg gaggaagtgg tatgacgcca 840 gtgatgaacg cctttcagag gcccatcctg gcggtccttg tcttcctcct cctcccccaa 900 tccaaagtcc tccctctttt cgtgagagag taagggagtt ttgcaggatg aagtcctgcg 960 ccaaggcttt ttccttggaa acctccctgg gcctaaataa ggcctgggtg ggttcgatag 1020 acatccctag cacttctgtg tgctgtgcgg atggaagaac taccggaggg caaacgattg 1080 ctcaagaagc tgaccccttg caacataggg tcagcacatc tgtagccccc ggtagggcgc 1140 aatggatctc tgagcgcaga caggctctgc gaaggagaga gcaagcaaat agcttgcagg 1200 gtcttgctgc tcaaactgat atgacttttg agcaggctag aaatgcttat cttggcgctg 1260 ccgacatgat tgagcaaggc ctaccgctgc ttccccctct gcgcagcgct tacgccccta 1320 ggggtttgtg gaggggaccc tctaccaggg ccaattacac gttggatttt aggctcaatg 1380 gtataccgac tgggacaaac acattggaaa ttttgtacaa tcctgtgtcg gaagaagaga 1440 tggaagagta ccgggacagg ggtatgtcag ctgtggtaat tgatgcgcta gaaatagcaa 1500 taaacccatt tggcatgcct ggtaatccta cggacttgac cgtcgtagca acatatgggc 1560 acgagcgtga tatgacgcga gcctttattg gatctgcttc cacgttcttg gggaatgggt 1620 tagctagagc cattttcttt cctggtttgc aatatagcca ggaggaacca aggcgcgaat 1680 ctataattcg cttatatgtt gcttcaacca atgccactgt agacactgac tcagttttgg 1740 cagccattag tgttggtact ttgcgacaac atgttggctc catgcactat cgaacagtgg 1800 ctagtactgt gcatcaggcc caggtgcaag gaacaacgct cagggctaca atgatgggta 1860 ataccgttgt tgtatcacct gaaggaagtc tggttgctgg aacccctgaa gcaagagttg 1920 aaataggggg tggttccagt atcaggatgg tgggtcctct gcaatgggag agtgtggagg 1980 aaccagggca gactttctct atcagaagtc gctcacgctc ggtgaggatt gaccgaaatg 2040 ttgatcttcc tcaacttgag gctgaaccca gattgagttc aactgtgaga ggactagctg 2100 gtagaggagt gatctatatc ccaaaggatt gccaggcaaa tagatacttg ggcaccctga 2160 acatacgtga tatgatctca gatttcaagg gtgttcagta tgaaaagtgg ataactgcag 2220 gactagtcat gcctactttt aagatagtta ttaggctacc tgcaaatgct ttcactggat 2280 tgacatgggt gatgagcttc gatgcttata accggataac tagtagaatc actgctagtg 2340 cggatcctgt gtacacccta tcagtcccac attggcttat ccaccataag ttgggcacgt 2400 tttcgtgtga agtgaactat ggggaattgt gtggtcatgc catgtggttt aagtccacga 2460 cttttgaatc tccaaggtta cacttcacat gtttaacggg taacaacaaa gagctggcgg 2520 cagactggca agctgttgtg gagctatatg ctgaattgga agaggccacc tcttttcttg 2580 ggaaacctac tttggttttt gacccaggag tttttaatgg taaattccaa tttctgactt 2640 gccctcccat attctttgac ctgacagccg tcacagccct aaggagtgct gggctgacat 2700 tgggacaagt cccaatggtc ggcaccacta aggtttataa cttaaacagc actctcgtga 2760 gctgtgtttt gggtatggga ggtactatta gaggaagagt gcatatctgt gcgccaatct 2820 tctatagtat tgttttgtgg gttgtcagtg agtggaacgg gaccactatg gactggaatg 2880 aacttttcaa gtatcccggg gtatatgtgg aagaggacgg gttttttgaa gtcaagattc 2940 gttctccata tcaccgaacg cctgctaaat tgcttgctgg ccaaagccag agggacatga 3000 gctctctgaa tttctatgca atagcaggac ctattgctcc ttcgggtgaa actgcacgac 3060 ttcccatcgt tgtgcaaatt gatgagattg tgcgcccaga cctctctcta ccaagttttg 3120 aagatgatta ttttgtgtgg gtagactttt ctgagtttac tctcgataaa gaagaaattg 3180 agattggttc ccgtttcttc gatttcactt caagtacttg tagggtgtct atgggagaaa 3240 atccgtttgc tgcgatgatt gcctgtcatg ggttgcatag tggtgtgctg gatctcaaac 3300 tccaatggag cctgaacacc gagtttggca agagtagcgg gagcgttact atcacgaagc 3360 tggtgggtga taaagctatg ggcctggatg gaccttctca agtttttgcc atacaaaaac 3420 tagagggagt tacagatttg ctgattggga attttgcagg agcaaaccct aacagtcatt 3480 tctcccttta cagccgatgg atggcaatta aattggacca agcaaagagt attaaagtac 3540 tccgtgtctt gtgcaagcct cgtccaggtt tcagttttta tggaagaacc agcttcccag 3600 tctagagtat ctgactataa aagactcagg tgtacatatg tgctttaata gttgtatgta 3660 ttattttgca ttgtagtttg ctttaacttg tttactgctt tagtgtgttt aatttcatgc 3720 ttttagtggc gacagtgtgt tgtttgtcct ttggacacac ttgccttgtt ggacgcaaaa 3780 agattttctt ttctttttac tgttttgcag attttac 3817 //