ID JF968120; SV 1; linear; genomic RNA; STD; VRL; 7342 BP. XX AC JF968120; XX DT 01-JUN-2012 (Rel. 113, Created) DT 09-NOV-2012 (Rel. 114, Last updated, Version 3) XX DE Grapevine fanleaf virus isolate SAPCS3 segment RNA1, complete sequence. XX KW . XX OS Grapevine fanleaf virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Nepovirus. XX RN [1] RP 1-7342 RX DOI; 10.1007/s11262-012-0765-2. RX PUBMED; 22669541. RA Lamprecht R.L., Maree H.J., Stephan D., Burger J.T.; RT "Complete nucleotide sequence of a South African isolate of Grapevine RT fanleaf virus"; RL Virus Genes 45(2):406-410(2012). XX RN [2] RP 1-7342 RA Lamprecht R.L., Maree H.J., Stephan D., Burger J.T.; RT ; RL Submitted (16-MAY-2011) to the INSDC. RL Genetics, Stellenbosch University, Private bag x1, Matieland 7602, RL Stellenbosch, Western Cape 7602, South Africa XX DR MD5; 8e57e406c47272934c790fffcbfeaf2a. XX FH Key Location/Qualifiers FH FT source 1..7342 FT /organism="Grapevine fanleaf virus" FT /segment="RNA1" FT /host="Vitis vinifera cultivar Cabernet Sauvignon" FT /isolate="SAPCS3" FT /mol_type="genomic RNA" FT /country="South Africa" FT /db_xref="taxon:12274" FT CDS 244..7098 FT /codon_start=1 FT /product="polyprotein P1" FT /db_xref="GOA:I3QD32" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR014759" FT /db_xref="UniProtKB/TrEMBL:I3QD32" FT /protein_id="AFI71813.1" FT /translation="MWQVPEGSQCCCTGKSFSNAEAKELRYVCSCFMCTRLVKAVAPPQ FT QLRKSRIAPAPLKSKGTIEVPSQVAVGVKPVSPKSKGTSVVPTPLLKQRCEVVVQYGPP FT ADIELVYPPLVREEEKSSKEMALPPAKKVDVRVPVCCAPRWMVAISKPPKKLAVKASKL FT QFPKGAVAYNGVNFINTKGKVVLSEGAKRILKGIRVATKQRLRAARRSAACKRVRAVRA FT LAKFEAIVQSERLDQLKTGFQVVLPAPKMSCSLREAAPSTTSVVVVKKRKLSKLPKILP FT EQDFSCLEGFDWGEKSHPVEVDIEDDWVLVEKPVLKRQAAQTAQGRATEALTRFAATSG FT FSLGAHQKVEGFASLGEEEHLMAGEFADLCLLSLVYNDAPTLSATIEELGESKDFLDAI FT ELLKLELAEIPTDSTTCAPFRQWASAAKQMAKGVGTMVGDFTRAAGAAVVISFDMAVEF FT LQDKALKFCKRIFDVTMAPYLQHLASAHSILKKIWEKLSEWMESLKNKASLALEVMAQH FT AIFALGAMVIGGVVVLVEKVLIAAKIIPNCGIILGAFLTLFFASLGLTALECTAEEIFR FT MHACCKSAIYSMYSVEEPTMVGEGESHTMGATQGLDNAIQALTRVGQSMISFKLGSFSY FT YAKIAQGFDQLARGKRAIGELTSWLIDLVGSIYSQVSGQESTFFDELSTIVCLDVRAWL FT LKSKRVRLQVETMAIGDRITLDTIAKLLEEGHKILVTAAGVPRKTSADFTMCIKEEVSK FT LEEVHARTACAGINEGMRAFPFWVYIFGASQSGKTTIANSIIIPALLDEMNLPKSSVYS FT RPKTGGFWSGYARQACVKVDDFYAIEQTPSLASSMIDVVNSEPYPLDMAYIHEKGMSMD FT SPLVVTTANTVVPPTNSQVVDLPSFYNRRAAVLEVRRKDGSFFTPRAYDSCIEVRFMHN FT KCPYVDSAGTPQGPAVNTPMDEGWITPSEAVAVLKNLLGEHILAEEAKLLEYRERIGND FT HPIYTAAKEFIGNMHYPGQWLTTEQKNTYGIKDDGFSFLAVDGKMYKYNVLGKLNPCES FT EPPHPNVIPWLEKKTLEIVHWDVHKHIATGPRNALVACFLQGLVQGQSKVESVERMGKD FT SSPEQQSFFKRLSLSERIYLRLCQIRIDNIQKEELAGSGRGPMAILRECLLKSKQVVVE FT NYSLLLTLVAILLLISAAYTLLSTVVALASCSSFAGGMVAVTAVNSASIPCSEPRMEER FT YSPRNRFVSRISKIRGEGPSKGQGEHEELVTELYYYCDGVKKLISTCWFKGRSLLMTRH FT QALAIPIGSEIEVIYADGTIKKLVWPGRQEDGNCKGFVEFPENELVVFEHPHLLTQPIK FT YEKYFVDDADRQISPNVAVKCCVARLEDGIPQFHFWNKYATARSEVHTLKDEGGGNVYQ FT NKIRRYIVYAHEAKKYDCGALAVAVIQGTPKVIAMLVSGNRGVTYSSVIPNYSSSFVRG FT EVPYVPEDGLVTRGYRKVGYLRASDAPHVPSKTSFLKVPDELCFPYPDPKQPAILSAED FT ERLRGTVHEGYTPLRDGMRKFAEPMHLLEEKLLDEVAGDMVQTWYDPNEFLEDISLDQA FT INGDMDEEYFDPLVMDTSEGYPDVLDRKPGEKGKARFFVGEPGNRVFVAGCSPEKAYYQ FT LEEDSKTKVPSLISIETPKDERLKRSKIDTPGTRLFSVLPLAYNLLLRVKFLSFSRLLM FT KKRGHLPCQVGINPYSREWTDLYHRLGELSDVGYNCDYRAFDGLITDQILGVIADMINA FT GYRDPVGNRQRKNLLLAISGRLSICGNQVYATEAGIPSGCALTVVLNSIFNELLMRYCF FT KKIVPPVYKECFDRCVVLITYGDDNVFTVAQSVMQHFTGDALKLQMAKLGVTITDGKDK FT SLSSIPARPLLELEFLKRGFVRSSGGLINAPLEKLSIMSSLVYIRSDGSDMLQKLLDNV FT NTALVELYLHGDRAYFESVRTFYMEKLPPGAYKELTTWFQAETFHECQKSGESGYKPQG FT LIEVSHGAAFASFTQQAGTELEKHDICPGLSIAGTKYIASENEIILSLSSILPGDRNVF FT KLDLPCGDGIGRLPSKSSILKLREPGLVLRLCERAQVERKTLVIRDERPYIGAWAVACI FT CSESFGFGLQSVLALYANLLGPNRKNGLASYFSNFESPTHIKRVHATTNSHVGGKALKE FT VFTFCETTLYNATCMDTRKEMIRNQPDAYPSISLVGGICFPNEGGEPGAMYSETDVTMA FT GQVQGVYVSEACIKCCRRCAGVATKVVTNTQLFGNNLLKTHLKALRKIQNHTCLRK" XX SQ Sequence 7342 BP; 1998 A; 1396 C; 1852 G; 2096 T; 0 other; atgaaaaatt tttgtgagtt cttacgttac cgagattgca gtcttatttt gtgaagagtt 60 taagaaactc aagattggaa tttccagcga agagtttgag aaactcaaat tgcgaagtgt 120 ttaagaaaca cactgttgta ttttgcctgt tgctaagttc tgaacaagct acttttaatc 180 tacttgcttt actgtgttat ttgtttaagt ttagttttgt agttttaaaa gttgtttgcc 240 actatgtggc aggtacctga gggttcccag tgctgttgca ctgggaagtc cttttcaaat 300 gcggaggcta aggaactccg ctacgtgtgt tcatgtttca tgtgcacacg tcttgttaag 360 gctgtggcac ctccacagca attaaggaag agcaggatag cgcctgctcc cctaaaatcc 420 aaaggaacca ttgaggttcc atcccaagtg gctgttgggg tcaaacctgt cagcccaaaa 480 tccaaaggaa cttctgtggt tccaacacct ttgctaaagc aaaggtgtga agtagtagtt 540 caatacggcc ctccagccga tattgagctt gtttatccgc ctttggtgcg ggaggaggag 600 aaatcctcca aggaaatggc tctgccacct gccaaaaagg tggacgtaag ggtgccagtc 660 tgttgtgcac ccaggtggat ggtggccatc tccaaaccac caaagaagct agccgttaaa 720 gctagcaagc tacagttccc taaaggagct gtagcttaca atggtgttaa ttttattaac 780 accaagggaa aagtcgtcct atctgagggc gcaaagagga tccttaaagg gatccgcgtt 840 gccactaagc aacgtcttag agctgcacgc agatctgctg cgtgcaagag ggtaagagcc 900 gtgcgtgctc ttgccaaatt tgaggcaatc gttcaaagtg aacgattgga ccagttgaag 960 actgggttcc aagtggtgct accagcacca aaaatgagct gcagcttaag agaggctgct 1020 ccttctacca cctctgtggt ggtagttaag aagaggaagc tgtcaaagct tcctaagatt 1080 ctgcccgagc aggacttttc ttgcttggaa ggctttgact ggggggagaa atcccaccca 1140 gttgaagtgg acattgagga cgactgggtc ctcgtggaaa aacctgtcct caagagacag 1200 gctgcgcaaa ctgcgcaggg aagggcgacc gaggccttaa ctcggtttgc agctaccagt 1260 ggcttttcac tgggtgccca ccagaaggtg gaaggttttg cctcacttgg tgaggaggaa 1320 cacttgatgg caggagaatt tgcggacctc tgcttgctat ctttggtgta caatgatgca 1380 ccaacattgt ctgcaactat tgaggaactt ggcgaaagca aagactttct tgacgctatt 1440 gaactcctca agttggaatt agctgaaatt ccaacagact ccaccacatg tgccccattt 1500 agacaatggg cttctgctgc taagcagatg gctaaagggg ttggtaccat ggttggcgat 1560 tttaccaggg ctgctggagc tgctgttgtt atctcttttg atatggcagt agaatttttg 1620 caagacaaag cattaaagtt ctgtaaaagg atctttgatg ttacaatggc tccatatttg 1680 cagcatcttg ctagtgcaca ttccatccta aagaaaatat gggaaaaatt gtcggaatgg 1740 atggagagcc tcaaaaataa agctagcctg gcacttgaag tgatggcaca acatgccatt 1800 tttgccctag gcgctatggt cataggagga gtggtagtgt tggtagaaaa ggtgcttatt 1860 gcggccaaaa ttattcctaa ttgtgggatt attttgggag cttttttgac acttttcttc 1920 gccagtctag ggctaacagc cttggagtgc actgcagaag aaatcttcag aatgcatgcg 1980 tgttgtaaaa gcgctattta ttccatgtat tctgtagaag aacccaccat ggttggtgaa 2040 ggggaatccc acactatggg ggcgactcag ggacttgata atgcaattca agccctgact 2100 cgagtaggac agagtatgat aagctttaag ctggggagct tttcatatta tgcaaagata 2160 gcccagggat ttgaccaact tgcaagaggt aagcgggcga taggcgaact tactagttgg 2220 cttatagacc ttgttgggag tatatactct caggtctctg gtcaggagag caccttcttt 2280 gatgagctct ctactattgt ttgcctagat gtaagagcgt ggctgctgaa gagcaagcgc 2340 gttcgactgc aagttgaaac aatggccata ggtgatagaa taaccttgga tactattgcc 2400 aaattgcttg aagaaggcca taagatactt gttactgcgg caggcgtccc aaggaaaacg 2460 tctgctgatt ttacaatgtg catcaaagag gaggtgtcca aattggaaga agtgcatgct 2520 agaacggcgt gtgctggtat taatgagggc atgagagcct ttcctttctg ggtgtacatt 2580 tttggagctt cgcaatctgg gaagacgacg atagccaatt ctattataat tccggctttg 2640 ctggatgaaa tgaatcttcc taagagttcg gtttactcta ggcccaaaac tggtgggttt 2700 tggagtggtt atgccaggca agcatgtgtg aaagttgatg atttctatgc cattgaacaa 2760 acacccagtt tggcgagttc tatgattgat gtagtgaatt cggagcccta tcctctcgat 2820 atggcttaca tccatgaaaa gggaatgtca atggattctc cacttgtcgt taccactgca 2880 aacactgtag tacctcccac taattctcag gtggtggatt tgccatcatt ttataatagg 2940 agggcggcag tgctagaggt tcggaggaag gatgggagtt tctttactcc acgggcatat 3000 gattcgtgta ttgaagtgcg cttcatgcac aacaagtgtc cttatgttga ttctgctgga 3060 acgcctcagg gccccgcagt aaacactccc atggatgaag ggtggatcac tccaagtgag 3120 gctgttgcgg ttctcaaaaa tctcttgggt gagcatatct tagctgaaga agcaaagctg 3180 ctggaatata gagagcggat tggtaatgac catcctatat acactgcagc taaagagttc 3240 ataggtaata tgcattatcc tggacagtgg ttgaccactg aacaaaagaa tacctatggg 3300 attaaagatg atgggttttc tttcctcgct gttgacggta agatgtataa atacaatgtg 3360 ctgggaaagt tgaatccttg tgaatctgaa ccaccacatc ccaatgtgat tccttggttg 3420 gaaaagaaaa cattagaaat tgtacattgg gacgtgcaca aacatattgc tactggtccc 3480 cggaacgcgc tagttgcatg ttttctacaa ggtttagtcc aaggacaaag caaggtagag 3540 agtgtggaac gcatgggaaa agacagttct ccagaacaac agagcttctt caaacgctta 3600 agtttgtctg agagaattta tctgaggttg tgccagattc ggattgacaa tattcagaaa 3660 gaagaattgg caggatctgg aaggggaccc atggcaatac taagagaatg cctactgaag 3720 agtaagcaag tggttgtaga aaactactcg ttgctattga cgctggtggc gattcttttg 3780 cttatcagcg ctgcttatac gctactctct acggtagtgg cccttgccag ttgttcaagc 3840 tttgctggtg gtatggttgc tgtgacggct gttaacagcg cctctatacc ctgttcagaa 3900 cctcgcatgg aggaaagata ctcccctagg aatcgttttg tctcgcgaat ctccaaaatt 3960 aggggcgagg ggccttccaa aggacaaggt gagcatgagg aattggttac tgagctctat 4020 tattattgtg atggagttaa gaagctaatt tccacgtgct ggtttaaggg aaggtctctc 4080 ttaatgacga gacatcaagc cctggcaatt ccaattggca gtgaaatcga agtcatatat 4140 gctgatggaa caataaagaa gttagtttgg ccaggtaggc aagaagacgg caattgcaaa 4200 ggcttcgttg aatttcctga aaatgagtta gttgtcttcg agcacccaca cttgttgacg 4260 caacccatta agtatgagaa gtattttgtg gatgatgccg atagacagat ttctcctaac 4320 gttgcggtta aatgttgtgt ggcgcgttta gaagatggaa ttcctcaatt tcatttctgg 4380 aataaatacg cgacagcccg cagcgaggtc catactctta aagatgaagg aggaggaaat 4440 gtctaccaga acaagataag gcgctatatt gtctatgcgc acgaagcaaa gaagtatgat 4500 tgtggtgcct tggccgtggc tgtgatccaa ggtactccaa aagtcattgc aatgcttgta 4560 tctggaaata gaggtgtaac ctattcttct gtaattccga attacagttc ttcctttgtt 4620 aggggggaag tgccatatgt gccagaagat gggttagtga caagaggata taggaaagtg 4680 ggctatttac gtgcgtctga cgctccacat gtaccttcaa agacttcttt cttgaaggtg 4740 ccagatgagt tatgctttcc atatcccgat cccaaacagc ctgccattct tagtgccgaa 4800 gatgaacgct tgaggggaac agtccacgaa ggctatactc ctttgaggga tggcatgaga 4860 aagttcgctg aaccaatgca cttgttggag gagaaactgc ttgatgaagt tgcaggagac 4920 atggttcaga cgtggtacga tccaaatgaa ttccttgaag atatttctct agatcaggcc 4980 atcaatgggg atatggatga agaatacttt gatcccttgg tgatggatac atctgaagga 5040 tatcccgatg ttctggatcg caaacctgga gaaaaaggaa aggcgagatt ttttgttggg 5100 gaaccaggaa atagagtctt tgtggctggt tgtagtcctg aaaaggccta ttatcagtta 5160 gaagaggatt ccaagaccaa ggtaccttcc ttgataagta tagaaacccc aaaagacgaa 5220 agactgaaga gaagcaagat tgatactccc ggtacgagat tattttctgt gttgcctttg 5280 gcatataatc tgttactgag agtgaaattc ttatctttct ctcgcctgtt gatgaagaag 5340 agaggtcatc taccgtgcca ggtaggcatc aatccttata gtcgtgaatg gactgatttg 5400 taccaccgtt taggtgaact ttctgacgtg gggtacaatt gtgactatag ggcttttgat 5460 ggcttgatta cggaccagat attgggcgtc attgctgata tgatcaatgc tggataccgt 5520 gatcctgttg gtaataggca gaggaaaaat ctgcttctgg cgataagtgg acgcctctct 5580 atttgtggaa atcaagtgta tgccactgaa gcaggtatac cttctggatg tgctctcaca 5640 gtagtgctta attccatttt caatgaacta ctgatgagat attgcttcaa gaagatagtt 5700 cctcctgtgt acaaagaatg ttttgacaga tgtgttgtac ttatcactta tggtgatgac 5760 aatgtcttta ccgtagcaca gtctgtcatg caacatttta ctggcgatgc cttaaagttg 5820 cagatggcaa agttgggggt aactattact gacggaaagg ataagtctct ttccagtatt 5880 ccagcccgtc cactgctgga attagagttt ttgaaacgtg gatttgtgag aagttctggg 5940 ggtctgataa atgccccttt ggaaaaattg tcaataatga gttccctagt ctacattaga 6000 agtgatggct ctgacatgtt gcagaaactg ctggacaatg tcaatactgc acttgttgag 6060 ctatatctac atggagatag ggcttatttt gaatcagtta gaacttttta catggaaaaa 6120 ctccctcctg gtgcttataa agagttgaca acgtggtttc aagccgaaac attccatgag 6180 tgtcagaaga gtggagaaag tggctataag ccacaggggc tcatagaagt tagtcacgga 6240 gcggcttttg ccagttttac tcaacaagct ggtacagagc tggaaaaaca tgacatttgc 6300 cctggcttat cgattgcagg aactaagtac attgccagtg agaatgaaat tattctgtca 6360 cttagttcca ttttgcccgg agacagaaat gttttcaaat tggatctacc ttgtggagat 6420 gggatagggc gtttaccatc caaaagtagt atcttgaaat tgagagaacc gggcctggtt 6480 ttgagattat gtgagcgcgc ccaagttgaa agaaagaccc tagtcattcg tgatgaaagg 6540 ccttatattg gtgcatgggc agtcgcttgc atatgtagtg aaagctttgg ttttgggcta 6600 cagagtgttc ttgcactcta tgctaatttg ttgggaccaa atcggaaaaa tggcttggct 6660 agttattttt ccaattttga gagtcccacc cacataaaga gagtccatgc cacaacgaac 6720 tctcatgtag gaggcaaagc tttgaaggaa gttttcactt tttgtgagac tactctttat 6780 aatgccacct gcatggatac taggaaagag atgattcgga atcaaccaga tgcctatcct 6840 agtatcagtc ttgttggggg aatttgtttc ccgaacgagg gaggagaacc tggagctatg 6900 tattcagaaa ctgatgttac aatggccgga caggttcagg gagtatatgt gagtgaggcg 6960 tgcataaaat gttgtagacg ctgtgcaggg gtcgcaacta aggttgttac taatacacaa 7020 ctttttggca acaatctttt gaagactcat cttaaggctc tgaggaagat tcagaatcat 7080 acatgcctta ggaagtaatc cttccaattc ttggtactgg gataaccaag attaaataac 7140 ccagtttctt ttgcctttca tgctctttga ggcaattgaa tattagagca tttgtgttat 7200 tatttgtttt aacttgttta ccgctttagt gtgtttattt tcatgctttt tagtggcgac 7260 agtgtgttgt ttgtcctttg gacacacttg ccttgttgga cgcaaaaaga ttttcctttc 7320 tttttactgt tttgcattta at 7342 //