ID JF960236; SV 1; linear; genomic RNA; STD; VRL; 4773 BP. XX AC JF960236; XX DT 28-JUN-2011 (Rel. 109, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 3) XX DE Tomato spotted wilt virus isolate TSWV-YN segment M, complete sequence. XX KW . XX OS Orthotospovirus tomatomaculae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus. XX RN [1] RP 1-4773 RX PUBMED; 21805095. RA Hu Z.Z., Feng Z.K., Zhang Z.J., Liu Y.B., Tao X.R.; RT "Complete genome sequence of a tomato spotted wilt virus isolate from China RT and comparison to other TSWV isolates of different geographic origin"; RL Arch. Virol. 156(10):1905-1908(2011). XX RN [2] RP 1-4773 RA Tao X., Hu Z., Feng Z., Yao M.; RT ; RL Submitted (16-MAY-2011) to the INSDC. RL Plant Protection, Plant Pathology, Weigang 1#, Nanking, Jiangsu 3431383, RL China XX DR MD5; 7228409fa049c6b13d5265b7533de168. DR EuropePMC; PMC6598649; 31206553. XX CC GenBank Accession Numbers JF960235-JF960237 represent the complete CC genome of Tomato spotted wilt virus isolate TSWV-YN. XX FH Key Location/Qualifiers FH FT source 1..4773 FT /organism="Orthotospovirus tomatomaculae" FT /segment="M" FT /host="tomato" FT /isolate="TSWV-YN" FT /mol_type="genomic RNA" FT /country="China" FT /collection_date="Jul-2010" FT /db_xref="taxon:3052585" FT gene 101..1009 FT /gene="NSm" FT CDS 101..1009 FT /codon_start=1 FT /gene="NSm" FT /product="non-structural protein" FT /db_xref="InterPro:IPR000603" FT /db_xref="InterPro:IPR006889" FT /db_xref="UniProtKB/TrEMBL:F8UX85" FT /protein_id="AEI70837.1" FT /translation="MLTFFGNKGSSKSARKDEGPLVSLAKHNGNVEVSKPWSSSDEKLA FT LTKAMDTSKGKILLNTEGTSSFGTYESDSITESEGYDLSARMIVDTNHHISNWKNDLFV FT GNGKQNANKVIKICPTWDSRKQYMMISRIVIWVCPTIPNPTGKLVVALVDPNMPSEKQI FT ILKGQGTITDPICFVFYLNWSIPKMNNTPENCCQLHLMCSQEYKKGVSFGSVMYSWTKE FT FCDSPRADKDKSCMVIPLNRAIRARSQAFIEACKLIIPKGNSEKQIKKQLKELSSNLER FT SVEEEEEGVYDNVAQLSFDEI" FT gene complement(1282..4689) FT /gene="GP" FT CDS complement(1282..4689) FT /codon_start=1 FT /gene="GP" FT /product="glycoprotein precursor" FT /db_xref="GOA:F8UX86" FT /db_xref="InterPro:IPR005167" FT /db_xref="InterPro:IPR014414" FT /db_xref="UniProtKB/TrEMBL:F8UX86" FT /protein_id="AEI70838.1" FT /translation="MRILKLLELVVKVSLFTIALSSVLLAFLIFRATDAKVEIIRGDHP FT EVYDDSAENEVPTAASIQRKAILETLTNLMLESQTPGTRQIREEESTIPIFAGSTTQKI FT ISVSDLPNNCLNASSLKCEIKGISTYNVYYQVENNGVIYSCVSDSAEGLEKCDNSLNLP FT KRFSKVPVIPITKLDNKRHFSVGTKFFISESLTQDNYPITYNSYPTNGTVSLQTVKLSG FT DCKITKSNFANPYTVSITSPEKIMGYLIKKPGENAEHKVISFSGSASITFTEEMLDGEH FT NLLCGDKSAKIPKTNKRVRDCIIKYSKSIYKQTACINFSWIRLILIALLIYFPIRWLVN FT KTTKPLFLWYDLIGLITYPILLLINCLWKYFPFKCSNCGNLCIITHECTKICICNKSKA FT SKEHSSECPILSKETDHDYNKHKWTSMEWFHLIVNTKLSFSLLKFVTEILIGLVILSQM FT PMSMAQTTQCLSGCFYVPGCPVLVTSKFEKCPEKDQCYCNVKEDKIIESIFGTNIVIEG FT PNDCIENQNCVAHPSIDNLIKCRLGCEYLDLFRNKPLYNGFSDYTGSSLGLTSVGLYEA FT KRLRNGIIDSYNRTDKISGMIAGDSLDKNETSIPENILPRQSLIFDSVVDGKYRYMAEQ FT SLLGGGGTVFMLNDKTSEKAKKFVIYIKSVGIHYEVSEKYTTAPIQSTHTDFYSTCTGN FT CDTCRKNQALTGFQDFCITPTSYWGCEEAWCFAINEGATCGFCRNIYDMDKSYRIYSVL FT KSTIVADVCISGILGGQCSRITEEVPYENALFQADIQADLHNDGITIGELIAHGPDSHI FT YSGNIANLNDPVKMFGHPQLTHDGVPIFTKKTLEGHDMSWDCAAIGKKSITIKTCGYDT FT YRFRSGLEQISDIPISFKDFSSFFLEKSFSLGKLKIVVDLPSDLFKVAPKRPSITSTRL FT NCNGCLLCGQGLSCILEFFSDLTFSTAISIDACSLSTYQLAVKKGSNKYNITMFCSANP FT DKKKMTLYPEGNPDISVEVLVNNVIVEEPENIIDQNDEYAHEEQQYNSDSSAWGFWDYI FT KSPFNFIASYFGSFFDTIRVILLIAFIFLVIYFCSILTTICKGYVKNKSYKSRSKIEDD FT DDSEIKAPMLMKDTMTRRRPPMDFSHLV" XX SQ Sequence 4773 BP; 1531 A; 852 C; 845 G; 1545 T; 0 other; agagcaatca gtgcgtcaga aatataccta ttatacactt tgctaagaat caatcaatta 60 cattacacaa gctcctctac ctcaggctgt tgaactcaaa atgttgactt tttttggtaa 120 taaggggtct tctaagtctg ccagaaagga tgaagggcct ttagtttcac ttgctaaaca 180 taacggtaat gttgaagtct caaaaccatg gtcttcttct gatgaaaagc ttgctttaac 240 caaagctatg gatacatcca aaggaaagat actgttgaac acagagggaa catcttcctt 300 tggaacatat gaatctgatt ctatcacaga atcagagggt tatgatcttt ctgcgagaat 360 gatagtagat acaaaccacc atatctcaaa ctggaaaaat gatctttttg tcggcaacgg 420 gaagcaaaac gctaataagg tcatcaagat ctgtccaact tgggacagca gaaaacaata 480 catgatgatt tccaggattg tgatatgggt ctgccccact ataccaaacc ctacagggaa 540 acttgtggtt gctctggtcg atcccaacat gccatctgaa aagcaaatca ttctgaaggg 600 tcaggggaca ataactgatc ctatctgttt tgttttttat ctgaactggt ctattccgaa 660 aatgaataac actccagaaa actgctgtca gctgcacttg atgtgcagtc aagaatacaa 720 gaagggggtt tcttttggta gtgtcatgta ttcttggaca aaggagtttt gtgattcacc 780 cagagctgat aaagacaaaa gttgcatggt catacctcta aacagggcta ttagagctag 840 atctcaagca ttcattgagg cttgcaagct gataattcct aaaggaaaca gtgagaagca 900 gattaaaaaa cagcttaaag aactgagctc aaatcttgag agatcagttg aagaagagga 960 ggaaggggtt tatgataatg ttgctcagtt atcttttgat gagatatagt acttttaata 1020 ccacttattt aagcttaaat ctctgtttat tttgcatttt taaatcaaaa accaaacaaa 1080 aaacaaaaat aaaaaacaaa caaaaaatca aaaacaaaaa acaaaaacaa aataaggctg 1140 aaaagccaaa ctttggtctg aagactcttt ttgttgtttt ttgtttattt gtattttttt 1200 gtttgttctt tgtttatttt atatatatat aattcgatta atgtaggaga taggatcaaa 1260 tttagcttgt gacaagcagc ctcagacaag gtgagagaaa tccataggtg gccttcgtct 1320 tgtcattgta tctttcatta acataggggc tttgatctca gaatcatcat catcctctat 1380 cttggatcta gatttataag atttattctt gacatatcct ttacaaattg ttgttagaat 1440 agaacagaaa taaatcacaa ggaaaatgaa tgcaataagc aatatcactc tgatagtatc 1500 aaaaaatgag ccaaagtaac ttgcaatgaa attgaatggg cttttaatat aatcccagaa 1560 gccccatgct gaggaatcag aattatattg ttgttcttca tgagcatact catcattttg 1620 atctattatg ttctccggtt cttctacaat aacattattg accagaactt ccacagaaat 1680 atccggattg ccttctggat acaatgtcat tttcttctta tccggattag cagaacaaaa 1740 cattgttatg ttgtatttgt tagacccttt tttaacagcc agctgataag tagatagaga 1800 gcaagcatct atagaaattg cagtagaaaa tgtcaaatct gagaaaaatt ccaaaatgca 1860 agataaacct tgaccgcata gaagacagcc gttgcaattc aatcttgtcg aagttatgga 1920 aggtctctta ggagcaactt taaaaagatc agatggaaga tcaacgacaa tcttgagttt 1980 ccctaaacta aaagattttt ccaagaaaaa actagagaaa tctttgaaac taatgggaat 2040 atctgatatt tgctctaaac cagatctaaa tctgtatgtg tcatatccgc atgttttaat 2100 agtgattgat tttttcccta ttgctgcaca atcccaagac atgtcatgtc cttctagagt 2160 tttcttagta aaaataggca ctccatcatg agtcaattgt ggatgaccaa acattttgac 2220 aggatcattc aagtttgcaa tatttccaga ataaatatgg ctgtcaggtc catgagctat 2280 cagttcacct atagtgatac catcattgtg cagatctgct tgtatatcag cttgaaacaa 2340 tgcattttca taaggaacct cttcagtaat ccttgagcat tgacctccta aaataccaga 2400 aatgcaaaca tctgccacta tagttgattt tagcactgaa taaattctat atgatttatc 2460 catgtcataa atatttcgac agaacccgca tgtagcacct tcattaattg caaaacacca 2520 agcttcttca catccccaat aagaagttgg tgttatacaa aaatcttgga aacctgttaa 2580 agcttgattt tttctgcaag tgtcacagtt tcctgtacaa gtggaataaa aatctgtgtg 2640 agtgctttgg ataggagctg ttgtgtattt ttcagacact tcataatgaa ttcccacact 2700 tttgatataa atcacgaatt tttttgcttt ttctgaggtc ttatcattta acatgaatac 2760 agtccctcct cctcctaaaa gagattgttc tgccatatat ctatatttcc catccacaac 2820 agaatcaaag atcaatgatt gtctaggcag aatgttctct ggtatgcttg tttcattttt 2880 gtctagagaa tctcctgcaa tcattccgga aatcttgtct gtacggttat aggaatctat 2940 tataccattc ctcaatctct tagcctcata cagaccaacc gatgttaaac ccaaagagct 3000 tcctgtataa tctgaaaacc cattatacaa aggtttgttg cgaaataaat ctaagtattc 3060 gcaacctaat ctacatttta taagattatc aatagatggg tgtgcaacac aattctggtt 3120 ctctatgcaa tcattaggac cttctataac aatgttagtg ccaaagatac tttctataat 3180 cttatcttct tttacattac agtaacattg atctttttca gggcattttt caaatttgct 3240 tgtaaccaaa actggacagc ctggaacata aaaacatcca ctcaaacatt gagtagtttg 3300 agccatagac atgggcattt gagacaaaat gaccaaacct attaagattt cagtcacaaa 3360 tttcagcaaa ctaaagctta gcttagtgtt cactattaga tggaaccatt ccatgctagt 3420 ccacttatgt ttgttgtagt catgatctgt ttctttggac agtatgggac actctgaaga 3480 gtgttctttt gaggctttgc ttttgttgca gatgcaaatt ttagtacact catgtgtgat 3540 tatgcacaaa ttgccacagt tagaacattt gaatggaaaa tatttccata agcaatttat 3600 gagcaacaaa atagggtatg tgatcaagcc tataagatca taccagagaa agagaggttt 3660 agttgtcttg tttactaacc accggatagg gaaatagatc aacaaagcta tcaatattaa 3720 tcttatccaa gagaaattga tgcaggctgt ttgtttataa atgctctttg aatatttgat 3780 tatgcaatct ctaactcttt tgtttgtttt tggtatttta gctgatttgt caccgcacaa 3840 gagattgtgc tcaccatcca acatttcttc agtaaaagtg atgcttgctg atccagaaaa 3900 agatatgacc ttgtgttccg cattttcacc aggttttttt atcaaataac ccatgatctt 3960 ctcggggcta gtgatgctaa cagtataggg attggcaaag tttgatttag ttattttgca 4020 gtctccagat aactttacgg tttgtaatga tactgttcca ttagtagggt acgagttata 4080 agttatagga taattatctt gtgtcaggct ttctgaaatg aagaattttg ttccaactga 4140 aaaatgcctt ttgttgtcaa gtttggtaat gggaataacc gggactttgg agaatctctt 4200 tggcaaattt aaagaattgt cacatttttc taacccttct gctgaatcag aaacacagga 4260 atatatgaca ccattatttt ccacttgata ataaacatta taagtggata tcccttttat 4320 ctcgcatttt aatgaagaag cattcaagca gttgttagga agatccgaga cagagattat 4380 tttttgcgta gttgacccag caaaaatagg gatggttgat tcttcttctc gtatctgacg 4440 ggttccagga gtctgagatt ctagcattag attagttaaa gtctccaaga tagccttgcg 4500 ttgaatcgat gcagcagtgg gtacttcatt ctcagcagaa tcatcataaa cctcaggatg 4560 atctccacga attatttcta ctttggcatc tgtggctctg aagatcaaga atgccaacaa 4620 gacagaactc agggcaattg tgaaaagact cacttttacc actagttcta gtagttttaa 4680 aattctcatc ttatacgtct gctcagatta taatggttat atgattaatt tcaagatgtc 4740 tggattaagg tttttgtttg cactgattgc tct 4773 //