ID JF960235; SV 1; linear; genomic RNA; STD; VRL; 2970 BP. XX AC JF960235; XX DT 28-JUN-2011 (Rel. 109, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 3) XX DE Tomato spotted wilt virus isolate TSWV-YN segment S, complete sequence. XX KW . XX OS Orthotospovirus tomatomaculae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus. XX RN [1] RP 1-2970 RX PUBMED; 21805095. RA Hu Z.Z., Feng Z.K., Zhang Z.J., Liu Y.B., Tao X.R.; RT "Complete genome sequence of a tomato spotted wilt virus isolate from China RT and comparison to other TSWV isolates of different geographic origin"; RL Arch. Virol. 156(10):1905-1908(2011). XX RN [2] RP 1-2970 RA Tao X., Hu Z., Feng Z., Yao M.; RT ; RL Submitted (16-MAY-2011) to the INSDC. RL Plant Protection, Plant Pathology, Weigang 1#, Nanking, Jiangsu 3431383, RL China XX DR MD5; 919fc73b5f8deb442a0a56cf02d0f301. DR EuropePMC; PMC4326804; 25540203. DR EuropePMC; PMC6598649; 31206553. XX CC GenBank Accession Numbers JF960235-JF960237 represent the complete CC genome of Tomato spotted wilt virus isolate TSWV-YN. XX FH Key Location/Qualifiers FH FT source 1..2970 FT /organism="Orthotospovirus tomatomaculae" FT /segment="S" FT /host="tomato" FT /isolate="TSWV-YN" FT /mol_type="genomic RNA" FT /country="China" FT /collection_date="Jul-2010" FT /db_xref="taxon:3052585" FT gene 89..1492 FT /gene="NSs" FT CDS 89..1492 FT /codon_start=1 FT /gene="NSs" FT /product="non-structural protein" FT /note="silencing suppessor" FT /db_xref="InterPro:IPR004915" FT /db_xref="UniProtKB/TrEMBL:F8UX83" FT /protein_id="AEI70835.1" FT /translation="MSSSVYESIIQTKASVWGSTASGKAVVDSYWIHELGTGSPLVQTQ FT LYSDSRSKSSFGYTAKVGNLPCEEEEILFQHVYIPIFDDIDFSININDSVLALSVCSNT FT VNTNGVKHQGHLKVLSPAQLHSIGSTMNRSDITDRFQLQEKDIIPNDRYIEAANKGSLS FT CVKEHTYKVEMCYNQALGKVNVLSPNRNVHEWLYCFKPNFNQVESNNRTVNSLAVKSLL FT MSAENNIMPNSQAFVKASTDSHFKLNLWLRVPKVLKQISIQKLFKVAGDKTNKTFYLSI FT ACIPNHNSVETALNISVICKHQLPIRKCQAPFELSMMFSDLKEPYNIVHDPSYPQRIVH FT ALLETHTSFAQVLCNNLQEDVIIYTLNNYELTPGKLDLGERTLNYSEDICKRKYFLSKT FT LECLPSNTQTMSYLDSIQIPSWKIDFARGEIKISPQSVSVAKSLLKLDLSGIKKKESKI FT SEAYASGSK" FT gene complement(2043..2819) FT /gene="N" FT CDS complement(2043..2819) FT /codon_start=1 FT /gene="N" FT /product="coat protein" FT /db_xref="GOA:F8UX84" FT /db_xref="InterPro:IPR002517" FT /db_xref="UniProtKB/TrEMBL:F8UX84" FT /protein_id="AEI70836.1" FT /translation="MSKVKLTKENIVALLTQGKDLEFEEDQNLVAFNFKTFCLENLDQI FT KKMSIISCLTFLKNRQSIVKVIKQSDFTFGKITIKKTSDRIGATDMTFRRLDSLIRVRL FT VEETGNSENLNTIKSKIASHPLIQAYGLPLDDAKSVRLAIMLGGSLPLIASVDSFEMIS FT VVLAIYQDAKYKDLGIDPKKYDTREALGKVCTVLKSKAFEMNEDQVKKGKEYAAILSSS FT NPNAKGSIAMEHYSETLNKFYEMFGVKKQTKLAELA" XX SQ Sequence 2970 BP; 948 A; 548 C; 465 G; 1009 T; 0 other; agagcaattg tgtcataatt ttattcttaa tcaaacctca cttagaaaat cacaatactg 60 taataagaac acagtaccaa taaccataat gtcttcaagt gtttatgagt cgatcattca 120 gacaaaagct tcagtctggg gatcaactgc atctggtaaa gctgttgtag attcttactg 180 gattcatgaa cttggtactg gttctccact agttcaaacc cagttgtatt ctgattcaag 240 aagcaaaagt agctttggct atactgcaaa ggtggggaat cttccctgtg aagaagaaga 300 gattcttttt cagcatgtgt atatccctat ttttgatgat attgatttta gcatcaatat 360 taatgactct gttctggcac tatctgtttg ctcaaataca gttaatacta acggagtgaa 420 acatcaaggt catttgaaag ttttgtctcc tgctcagctc cattctattg gatctaccat 480 gaacagatct gatattacag accgattcca gctccaagaa aaagacataa ttcccaatga 540 cagatacatt gaagctgcaa acaagggctc tttgtcttgt gttaaagagc atacctataa 600 ggtcgagatg tgctacaatc aagctttggg caaagtgaat gttctatccc ctaacagaaa 660 tgtccatgaa tggctgtact gtttcaagcc aaatttcaat caagttgaaa gcaacaacag 720 aactgtaaat tctcttgcag tgaaatctct tctcatgtca gcagaaaaca acatcatgcc 780 taactctcag gcttttgtaa aagcttccac tgattctcat ttcaagctga acctctggct 840 aagagttcca aaggttttga agcagatttc cattcagaaa ttgttcaaag ttgcaggaga 900 taaaacaaac aaaacatttt atttatctat tgcttgcatt ccaaaccata acagtgttga 960 gacagcttta aacatttctg ttatttgcaa gcatcagctt ccaatccgta aatgtcaagc 1020 tccttttgaa ttatcaatga tgttttctga tttaaaggag ccttacaaca ttgttcatga 1080 tccttcatac cctcagagga ttgttcatgc tctgcttgaa actcacacat cttttgcaca 1140 agttctttgc aacaacttgc aagaagatgt gatcatctac actttgaaca actatgagct 1200 aactcctgga aagttagatc taggtgaaag aaccttgaat tacagtgaag atatctgcaa 1260 aaggaaatat ttcctttcaa aaacacttga atgtcttcca tctaacacac aaactatgtc 1320 ttacttagac agtatccaaa tcccttcctg gaagatagac tttgccaggg gagaaattaa 1380 aatttctcca caatctgttt cagttgcaaa atctttgtta aagcttgatt taagcgggat 1440 caaaaagaaa gaatctaaga tctcggaagc atatgcttca ggatcaaaat aatcttgccg 1500 tgtccagctt ttcctaatta tgttatgttt attttctttc tttactcata attatttctc 1560 tgttttgtca tttcttttga atttctcctg tttaatagaa accataaaaa taaaaataaa 1620 aataaaaata aaatcaaaat gaaacaaaaa tcaaaaaatg aaacaaaatc aaacaaaaat 1680 caaaaaatga aataaaaaca acaaaaaaat taaaaaacaa aaacccaaaa agatcccgaa 1740 agggacaatt ttggccaaat ttgggttttg ttttgttttt tgttttttgt tttttgtttt 1800 tattttattt ttatttttac ttatttattt tattttattt tattttattt tttcttttat 1860 ttttatttta tgttttttgt tgtttttgtt attttgttta ttattaagca caacacacag 1920 aaagcaaact ttaattaaac acacttattt taaatttaac acactaagca agcacaagca 1980 ataaagataa agaaagcttt atatatttat aggctttttt ataatttaac ttacaactgc 2040 ttttaagcaa gttctgcaag ttttgtctgt tttttaaccc cgaacatttc atagaacttg 2100 ttaagagttt cactgtaatg ttccatagca atacttcctt tagcattagg attgctggag 2160 ctaagtatag cagcatactc tttccctttc ttcacctgat cttcattcat ttcaaatgct 2220 ttgcttttta gcacagtgca aacttttcct aaggcttccc tggtgtcata cttctttgga 2280 tcgatcccga ggtctttgta ttttgcatcc tgatatatag ccaagacaac actgatcatc 2340 tcaaagctat caactgaagc aataagaggt aagctacctc ccagcattat ggcaagcctc 2400 acagactttg catcatcaag aggtaatcca taggcttgaa tcagagggtg agaagcaatc 2460 ttagatttga tagtattgag gttctcagaa ttcccagttt cctcgacaag cctgaccctg 2520 atcaagctat caagccttct gaaggtcatg tcagtggctc caatcctgtc tgaagttttc 2580 tttatagtga ttttgccaaa agtaaaatca ctttgcttaa taaccttcac tatactctga 2640 cgattcttca ggaatgtcag acatgaaata atgctcatct tcttgatctg gtcaaggttt 2700 tccagacaaa aagtcttgaa gttaaatgct accagattct gatcttcttc aaattcaaga 2760 tctttgcctt gtgtcaacaa agcaacaatg ttttccttag tgagcttaac cttagacatg 2820 atgatcgtag aagttgttat atgctttgac cgtatgtaat tcaaggtgcg aaagtacaac 2880 tctgtattcc gcagtcgttt cttagggttt taatgtgatg atttgtaaga ctgagtgtta 2940 aggtttgaat aaaattgaca caattgctct 2970 //