ID JF939844; SV 1; linear; genomic RNA; STD; VRL; 4222 BP. XX AC JF939844; XX DT 31-MAY-2013 (Rel. 116, Created) DT 31-MAY-2013 (Rel. 116, Last updated, Version 1) XX DE Naples virus strain Sabin polyprotein gene, complete cds. XX KW . XX OS Naples virus OC Viruses; unclassified viruses. XX RN [1] RP 1-4222 RA Palacios G., Savji N., Shah A., Lipkin W.I.; RT "Genomic and phylogenetic characterization of Naples serogroup RT phleboviruses"; RL Unpublished. XX RN [2] RP 1-4222 RA Palacios G., Savji N., Shah A., Lipkin W.I.; RT ; RL Submitted (12-MAY-2011) to the INSDC. RL Center for Infection and Immunity, Columbia University, 772 W 168th Street, RL 17th Floor, New York, NY 10032, USA XX DR MD5; 46de5bee1654d8ad6d22e188565cb3b4. XX FH Key Location/Qualifiers FH FT source 1..4222 FT /organism="Naples virus" FT /segment="M" FT /host="Homo sapiens" FT /strain="Sabin" FT /mol_type="genomic RNA" FT /country="Italy" FT /isolation_source="serum" FT /collection_date="1944" FT /note="serogroup: Naples" FT /db_xref="taxon:1170423" FT CDS 18..3998 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:R4I381" FT /db_xref="InterPro:IPR009878" FT /db_xref="InterPro:IPR010826" FT /db_xref="UniProtKB/TrEMBL:R4I381" FT /protein_id="AFH89008.1" FT /translation="MLNTKSIILITCLVQQVHLKYTIISEVTKGAREVSCYSSTTRLDQ FT LLEAWENKSALMGLRKGNCKLGAMEQVDCNLDLMSNYVSNVYDNPHGLGAMMYNTDDDK FT RIEVLNDQIPDSMIPGGHNCSLLERKPFWADLIPSKKENPRPSLISLVPTPRSDFKRKF FT EEAEEEMKKIRKELQDERQAQLSVIEEGRKRMRDLEDKLMRQWNEEKQKKGLLEETLEK FT ERQLKNKALLDAHNLDKQLKEKDREFKTAMEEHQNERHRINSNMIRPPITTPAAVILTS FT LLSASVVLGFELENRNTNHALNRPGNGGYSISDNNLIEAKCMITYGNKCPSWEMQLDPV FT SYPFFSSNFEKYSLLESISETSPIIGKFSEVCVLSNLPGAQKTCAKEASLIKKQCSDDM FT RAYFYINSLGKLAIVTCPENNVLSQDCNFCLRKAKGEQYVYKPIQDGFCQNGGVSSVPS FT IRYSKDICSIGPTKVKNCHKGTSRYERTAFISTGDKKVYLEEIKIRSRQEYEPDQFLCY FT KVKDSSSSPLAYEKVQVSKCKGIETNSPKKCTGDEYFCSKYPCESTSPEANCFLRKHSA FT ILEVNIGGMWIKPKCIGYEMALVKRVGLRSEDVSSKECATCLWECSSGYISITTHGPKI FT SYATACSHGSCKSIVQNPSTSIRISYPGNSEIVGGDIGIHLTEDSSPINLHLKIHCSPK FT DSCEVSDCIFCVHGLLNYQCHSVASALLLSTITASLIVLMIYMLSKTKFVMKKLIPIML FT TPLCWCFVLLAWLTKSWKGKMRNAIQSANSTIGWTEREERIVAERPRSRNTVRYSFYGV FT VILAMLESAFGCSESLIAESKVMQCNIANGKTSCRASGTIIMKLGPIGSEACLILKGLR FT DSDKQYISVKTESSELICREGESFWTSLYTPVCLSSRRCHLMGECTGDLCLKWKSNKTS FT LEFAGKTRSDVINENKCFEQSGGLGYGCFNVNPSCLYTHAYLKSVYRNGFRVFKCASWT FT HRVKLTITTHSRTFPMTLAAMSTQPTDWGSIGLILDSEGISGTNSFSFMKHGLGSFAII FT DEPYSMEPRKGFIGEVRCPTEEAAIKASTLCKTAPQLIEYQPEMDSAECTTNMIDPMSV FT FNRGSLPQVREGMTFTQSMEKNTVQAMTTGEVHASIRIVLDDYEVEYLSSQVDCDATFK FT NLTGCYSCDEGARVCMQIIAHGDTIFHFRNPDVSINILQKVNTNTLIYCSVVHFSKPVI FT KEEGTYDCGAGEKPMILKGTLVAVSPHNDRLEQGGSSIVINPKGGGVDFLGWLSGFSSW FT FGGPLKAILMVIGFLLLGLILFVTIAIGLKFALRQMIVKRMK" XX SQ Sequence 4222 BP; 1299 A; 778 C; 982 G; 1163 T; 0 other; acacaaagaa ggtgcttatg ttgaatacaa aatctataat tttaataacc tgtctagtgc 60 agcaggtcca tctgaaatac acgattattt cagaggtgac taagggtgct agggaggtga 120 gctgctatag ctcaacaacc agattagacc agctcttgga ggcttgggag aataagagtg 180 ccctaatggg acttagaaaa ggcaattgca aacttggagc tatggagcag gtggattgta 240 accttgatct catgtcaaac tacgtctcta atgtctatga taatccacac ggtttaggag 300 caatgatgta caatacagat gatgataaga ggattgaggt tctaaatgac cagattcctg 360 attctatgat ccctggagga cacaattgta gtctgctaga gagaaagcca ttctgggctg 420 atctcatacc atcaaaaaag gagaatccca ggccatctct gatttccctt gttccaactc 480 caagaagtga tttcaaaagg aaattcgaag aagctgaaga agaaatgaag aaaataagga 540 aagaattaca agatgagcgt caggcgcaat taagtgttat tgaagaaggc aggaaaagga 600 tgagggactt agaggacaaa cttatgaggc agtggaatga agaaaagcag aagaagggac 660 tgcttgagga aactttggag aaggaaaggc aactgaaaaa caaggctctt cttgatgcac 720 ataatctaga caagcagttg aaggaaaagg acagagaatt taagacagcc atggaagagc 780 atcagaatga gagacataga atcaacagta atatgatcag acctcctatc accactcccg 840 cagctgtgat cttgacttct cttttatctg ccagtgtggt tctaggcttc gaattggaaa 900 ataggaacac taatcatgca ctaaacagac ctgggaatgg tggttactct attagtgata 960 acaatctgat agaggctaaa tgcatgatca cctatggcaa caagtgtccc tcctgggaaa 1020 tgcagttaga tcctgtgtca taccccttct tctcttccaa ttttgagaag tacagtctgc 1080 tagagtctat ttcagaaacc tcaccgataa tagggaagtt ctcagaagtc tgtgttctct 1140 caaacttacc tggagctcag aaaacatgtg ccaaagaagc aagcttaatc aagaagcaat 1200 gttctgatga catgagagcc tacttctaca ttaactcttt agggaaactt gcaattgtca 1260 catgtccaga gaataatgtt ttgtcacaag actgcaattt ctgtctacga aaagccaaag 1320 gagagcagta tgtttacaaa cccattcaag atggcttttg tcagaatgga ggtgtttctt 1380 ctgttcctag cattagatat tcaaaagata tctgctccat aggaccaaca aaggttaaaa 1440 attgtcacaa aggcacttct aggtacgaaa ggacagcatt catatccact ggagacaaaa 1500 aagtatattt ggaggaaatt aaaataagat ctaggcaaga gtatgagcct gatcagttct 1560 tatgctacaa ggtaaaggac agctcttcat cgcctcttgc ctacgagaag gtccaagtgt 1620 ccaaatgtaa aggcattgaa acaaacagcc ctaagaaatg cacaggagat gaatacttct 1680 gcagcaagta cccttgtgag tcaaccagcc ctgaggcaaa ctgtttcctc agaaagcaca 1740 gtgcaatact agaggtcaac atcgggggga tgtggattaa gccaaaatgt attggttatg 1800 agatggccct agttaagagg gttggtctca ggtctgaaga tgtctcatca aaggagtgtg 1860 ccacttgctt atgggagtgc tccagtggtt acataagcat caccacacat gggcctaaga 1920 tttcttatgc aactgcatgt agtcatggat cttgcaagag tattgttcaa aacccatcaa 1980 catccattag aattagttat ccaggaaaca gtgaaattgt cgggggtgac atagggatcc 2040 acttaactga ggactcatct cctatcaacc tccatctgaa gatccactgt tcacctaagg 2100 attcttgtga agtgagtgat tgcatttttt gcgttcatgg gttgctgaat tatcaatgtc 2160 attccgtggc ttctgctctc cttttgtcca ctatcacagc atctcttatt gtgttaatga 2220 tttacatgct ttctaaaact aagtttgtaa tgaaaaagct cataccaatt atgctcactc 2280 cgctctgctg gtgttttgta ctgctagctt ggttaactaa gtcttggaaa gggaaaatga 2340 ggaatgcaat tcagtcagct aactccacaa ttgggtggac agaacgtgaa gaaaggattg 2400 ttgcggaaag accaaggagc aggaataccg taaggtattc tttctatggg gttgttatac 2460 tagccatgtt agaatctgcc tttggctgct ctgaaagcct cattgcagag tcaaaagtaa 2520 tgcaatgcaa tattgcaaat gggaaaacaa gctgtagagc ctctgggaca attattatga 2580 aattagggcc gataggatca gaagcttgtc tgattctcaa gggacttagg gatagtgaca 2640 agcagtacat atctgtgaaa actgaatcta gtgagctgat ctgcagagaa ggagagtcat 2700 tctggacctc cttgtatact ccagtttgct taagctcaag gaggtgtcat ttaatgggag 2760 agtgtacagg agacttgtgc ttaaagtgga agtcaaacaa aacttcttta gagtttgctg 2820 gcaagacacg tagtgatgtc ataaatgaaa acaagtgttt tgagcagagt ggtgggctag 2880 gatatgggtg cttcaatgtc aacccttcat gtctctatac tcatgcttat ttgaagtcag 2940 tttacaggaa tggttttaga gtgttcaagt gtgcttcttg gactcataga gttaagttaa 3000 ccattaccac gcactctaga acattcccta tgaccctagc agcaatgagc actcaaccca 3060 cagactgggg ctcaattggt ctaattctcg actcagaggg gatctcaggg acaaattcct 3120 tttccttcat gaagcatggt ctagggagct tcgctataat agatgagccc tattcaatgg 3180 aacccaggaa ggggttcatt ggagaagtca ggtgtccaac agaagaagca gctataaaag 3240 cctctactct gtgtaagaca gctccccagt taatagaata ccaacctgaa atggacagtg 3300 ccgaatgcac cacaaatatg attgatccaa tgagcgtatt caacagaggc tcccttcccc 3360 aggttagaga aggaatgact tttactcagt ctatggagaa gaataccgtt caggccatga 3420 ccacagggga agttcatgct agcattagga tagttctcga cgactatgag gttgaatatc 3480 tttcaagtca ggttgattgt gatgctacat tcaaaaattt gactggttgc tattcatgcg 3540 atgagggtgc aagagtgtgt atgcagatta tagcacatgg ggatactata ttccacttta 3600 gaaatccaga tgtgagtata aatattctac aaaaggttaa tacaaacact ttgatttatt 3660 gctctgtagt gcacttttca aagcctgtta taaaagagga aggaacatat gattgtggag 3720 caggagagaa gccaatgatt ctcaagggga cattggtggc ggtttctcct cataatgaca 3780 gactggaaca gggaggttcc tcaattgtga ttaatccaaa agggggtgga gttgacttcc 3840 ttggctggct ttctggattt agctcttggt ttgggggacc tcttaaggct attttaatgg 3900 tcattggttt ccttctcctg ggcctcatct tgtttgtgac aattgcgatc ggccttaagt 3960 ttgcactcag acaaatgata gttaaaagga tgaaatgatt agcaaatgtg gtctggatcc 4020 tgtggctttg attagcaaat acagtctgga ttctatagtt taattagtgg gttcaactgg 4080 gggggtatgg gcagcagttc aatccagcag ttggactcac ctagtatgta gagcaaaatc 4140 atttaaaaga tcagctaaat tggtctattg attgcttgtt ttgcaatttg ttgttttatt 4200 aataaagcac cggtctttgt gt 4222 //