ID JF939843; SV 1; linear; genomic RNA; STD; VRL; 6404 BP. XX AC JF939843; XX DT 31-MAY-2013 (Rel. 116, Created) DT 31-MAY-2013 (Rel. 116, Last updated, Version 1) XX DE Naples virus strain Sabin polymerase gene, complete cds. XX KW . XX OS Naples virus OC Viruses; unclassified viruses. XX RN [1] RP 1-6404 RA Palacios G., Savji N., Shah A., Lipkin W.I.; RT "Genomic and phylogenetic characterization of Naples serogroup RT phleboviruses"; RL Unpublished. XX RN [2] RP 1-6404 RA Palacios G., Savji N., Shah A., Lipkin W.I.; RT ; RL Submitted (12-MAY-2011) to the INSDC. RL Center for Infection and Immunity, Columbia University, 772 W 168th Street, RL 17th Floor, New York, NY 10032, USA XX DR MD5; 5972e0e0c2fe214633e2b3f7e1760cc3. XX FH Key Location/Qualifiers FH FT source 1..6404 FT /organism="Naples virus" FT /segment="L" FT /host="Homo sapiens" FT /strain="Sabin" FT /mol_type="genomic RNA" FT /country="Italy" FT /isolation_source="serum" FT /collection_date="1944" FT /note="serogroup: Naples" FT /db_xref="taxon:1170423" FT CDS 19..6306 FT /codon_start=1 FT /product="polymerase" FT /db_xref="GOA:R4I3K0" FT /db_xref="InterPro:IPR007099" FT /db_xref="InterPro:IPR007322" FT /db_xref="InterPro:IPR022531" FT /db_xref="InterPro:IPR029124" FT /db_xref="UniProtKB/TrEMBL:R4I3K0" FT /protein_id="AFH89007.1" FT /translation="MERILKKQPAPDGALTIHPLRRYDSTIYETPIPAYVIKHTSEGVT FT IDIATSELADYQSGSTIQPFESIPAQNLTLFKHDFTFGHLAETTDRKFVEVFGVLENRA FT DDSDYQSPDVIIETESGHVHVIEFTTTMGDLGSAEVAARNKIAKYEIACLNRSAIKPIS FT LHIIAVHFNGVVSNLELNDEEVNEIVFRFRLARDIFEELREINPSLFDSDETISRLERE FT VNSVMSSVRINWGLTSEKFPSFKEELFSNYNNNDANQEYLVRIIKKCTDEAIKGIEKDS FT LFDEDLSHSERMNRNADKVSLNIKSKIAEMLSYDFLRDADDHKSTVQIPPWVTLEGHKG FT KDLEPLKSLSVEGSHPMCKIWNKVCTNASIDKIERMHDDPQAELEYAMSGSTERAVERN FT KYHRTVLTLSSDEKEYAAVLGVCGKKNSNLGAVKEARVRSKKGFSIEHDVSKVEEYLYD FT INVIDLKPAEGLYNPLSEDIRLRELAMGLHQPTLIHVDGQLPETLECHRDFLMTPLGSW FT AQMVSVIGAELSASVKQHVKPNQLIVKRLLGSSVYLLIKPTTSKGHIFVSFAVDRRYLI FT RDLSKSSIFKPSIPAGDLMVTDFVSFKLSKITNLCRSLCMVEAAACFWSETYGYEPWRM FT LEHVDETKFKDTWFMIKLSLLTMMEDKATTEELQTIQRYVVMEGFVSLPELPNPSKMLS FT KIPKVLRSELQVFLTHRVLNTMQVISKNPFQLHRIGANIKWKSLFNPFSGNGVDELQTL FT ISCCYNGYFKNKEEETEPSALSAMYKKIIELEHLRPNTDQYLGYEDPEEPKMHEFSRSY FT LKLICDHAKGKLRKQYGRGVMSQIESSIIREVSSITLERLATLKATSNFNSNWYVYKDV FT RDKNYTRDKLLVKMTQFAKRGKTLAIEMFEECMSRIEEKGCMEICLFKKQQHGGLREIY FT VMGADERIVQSIIEAIARAIGRFFDSDTLCNPTNKTKIPETHGQRAKRRCGRSVWTCAT FT SDDARKWNQGHFVTKFALMLCEFTPEEWWPLIIRGCSMFTNKYMMMNLDFMRIIDSHKE FT LNIEDEFVTKLFSAYHGETVEPWIDQGKTYLKTSTGMMQGILHFTSSLLHSLHQEFIRT FT TSMQLFTNKMGSEASSKVVCDVMQGSDDSSMIISFPAENEKMKMRYKLIAAMCFRIKKS FT LGIYIGIYPSEKSTPNTDFVMEYNSEFFFHSQHIRPTIRWIAASCSLPEVETLVARQEE FT AANLLTAVTEGGGSFSLAAMVQQCQCTIHYMLMGMGVSAIFEQFSKAISKWMDPGLGFF FT LFDNPYSAGLSGFKYNLYRAIMNSDLKYVYSFFMRRVKGSSTKEDAIISESCSVSPGGA FT IVMSSTLRWGSVEKFKRLRNRLDIPEDWKDMINNSPEVLYRAPQTGTEIMLRIAEKVHS FT PGVVSSLSTGNAVCKVMASSVYFLSACIFEDAGNQEYKILNNDKYSLLQKIVAFDQFSG FT GEDISQEDLLFLFPNLVEFEAFDSIIYDKGKFNIVPRASQREATQTRIVVFEHHSSARV FT APEKLVSDKWFGTRKSKIGSPGFRQEWTRLKAIVRWLKDNPEETLDASPFSNHVQIRNF FT FARMEGKPRVIKVTGAPVKKRSGMSKIAMAIRDNFCKTGFLQGLEDEIGHSRAMQVEKL FT KHYLFSILLGPYTEDAKLEYVVKILREEPQVILNYNDKRSRANIISLLQRFIKSEVGIA FT NLIEEMKAGVFGAFVKTQHFSHSSINNKYYGRGIWKGVMDGYQIQIDIDGKEGMPSHLT FT GITISNCSKPWVLTQSIKAWCDDMLVNNNVDVSKGNTKANYWMYGFKMYGASYPYGCPI FT TLVRHDITNLGLLHDDDIDIKVRRNTINLFVRSTDKRPRDLHILSYTPSDSDISSVSSK FT HIMRDEYFSNKGSFTVEPTRSWMLCQPLSWMFVKPVLQVMSGKRTSPRQLDTERLKEIV FT RLCTESAIRNKVGTVYSQNKPEKLIESEPIDMSEMFDMMLEEGIDDVFEDIADCLTVDE FT DPDYMDEVDFDDESLNLFGPAHYKEIQSMTVLAHPLMDEFITKLVSKLGRSKIRRLLEK FT SIVTTEHRALAELLFLALGRDPSQIKEELIQGDSPTDIPDDLLG" XX SQ Sequence 6404 BP; 2056 A; 1134 C; 1508 G; 1706 T; 0 other; acacaaagag gcccaaatat ggaaagaatc cttaagaaac aaccagctcc tgatggagcc 60 ttaaccattc atccactgag gcggtacgat tcaaccattt atgaaacacc tattcctgct 120 tatgtcatta agcatacctc tgagggtgtt actattgaca ttgcaacgtc agaattggct 180 gattaccagt cagggtcaac aatacagccc tttgaatcaa tccctgcaca aaacctaaca 240 ttattcaagc atgactttac ttttggtcat ctggcagaga cgacggatag aaaatttgtg 300 gaggtgtttg gagtgcttga aaacagagcc gatgattctg actaccaatc gccagatgtc 360 attattgaga cggaatctgg tcatgttcat gtcatagagt tcacaactac catgggagac 420 ctgggttcag ctgaggtggc agctagaaat aaaatagcaa aatatgagat tgcatgcttg 480 aaccggtcgg caattaagcc catttcatta cacataattg cagtgcattt caatggtgtg 540 gtatcaaact tagagctaaa cgatgaggag gtcaatgaga ttgtctttag attcaggcta 600 gctagagaca tctttgagga gcttagagaa attaatcctt ctcttttcga ttcagatgaa 660 acaattagta ggcttgagag agaagtgaac agtgtgatgt cttctgtaag gattaactgg 720 ggactgacaa gtgagaaatt ccctagtttc aaggaggaac tattctcaaa ttacaataat 780 aatgatgcta accaagaata tctagttcgg atcattaaga agtgcactga tgaggcaatt 840 aaaggtatag aaaaggacag cttatttgat gaagatctgt cacattctga gagaatgaat 900 cgaaatgcag ataaggtgag cttaaacatt aagagcaaga ttgcagagat gctgtcttat 960 gatttcctca gagatgctga tgatcacaag tcaactgtcc agatcccacc ttgggtgaca 1020 cttgaagggc acaagggtaa agatctagaa cctttgaaat cattgtcagt tgaaggttca 1080 caccccatgt gtaagatctg gaataaggtg tgcacaaatg cttctataga taagattgaa 1140 aggatgcatg atgatcctca agctgagttg gagtatgcta tgtctggatc aactgaaagg 1200 gctgttgaac gaaacaagta tcatcgaact gttctaactt tgtctagtga tgagaaagaa 1260 tacgcagcgg ttttaggagt gtgtggtaag aagaacagca accttggagc tgtcaaggag 1320 gctagggtga gaagcaagaa ggggttctca atagagcatg atgtgagcaa agttgaggag 1380 tatctgtatg acatcaatgt aattgactta aagccagcag aaggcctcta caatcctttg 1440 tccgaagata taaggcttag agaactagct atggggctcc atcaaccaac actaatacat 1500 gtggatggac agcttcctga gacacttgag tgtcataggg acttcctaat gacgccgtta 1560 ggtagctggg cacagatggt ttcagtgata ggtgcagaat tgtcagcatc tgttaagcag 1620 catgtaaagc ctaaccagct catcgtgaag aggcttttag ggtcttcagt ttacctacta 1680 ataaaaccca ccacatctaa agggcatatc tttgtgtctt ttgcagttga cagaaggtac 1740 ttgataaggg acttgagtaa gtcttcaatc ttcaagccct ctattccagc aggagacctt 1800 atggtgaccg attttgtttc atttaagctg agcaagatca ccaacctttg cagatccctg 1860 tgtatggtgg aggcagcagc atgtttctgg tcagagacat atggatacga accctggagg 1920 atgttggaac atgttgatga aacaaagttc aaagatactt ggtttatgat taagttgtct 1980 ttacttacga tgatggaaga caaagcgacc actgaggaat tacagactat tcagcgatat 2040 gtagtaatgg aaggctttgt gtccttacca gagttgccaa atccctcaaa aatgctctct 2100 aaaattccaa aagtgcttag gtctgaacta caggttttcc tgactcacag agtactgaac 2160 acaatgcaag tgatatccaa gaatccattc caattacata gaattggggc aaatataaag 2220 tggaaatcac tgttcaatcc attttctgga aatggtgtag atgagttgca aacactcatt 2280 agttgctgct acaacggcta tttcaaaaat aaggaggaag aaactgagcc atcagcactg 2340 tctgcaatgt acaagaagat tatagaactt gagcatctga gacccaatac tgatcagtac 2400 cttggatacg aagatccaga ggagcccaaa atgcatgaat tcagcagaag ttatttaaag 2460 ctcatatgtg accatgctaa gggtaagttg agaaagcaat atggcagggg tgttatgagt 2520 cagattgaaa gcagtattat tagagaggtc tcttcaatca cattggaaag actcgccacc 2580 ttgaaagcaa ccagtaactt taatagtaac tggtatgttt ataaggatgt gcgagacaag 2640 aattatacaa gagacaagtt attagtcaag atgactcaat ttgctaagag aggtaaaact 2700 ctagcaatag agatgtttga ggagtgcatg agcaggatcg aggagaaggg ttgcatggag 2760 atttgcttat ttaaaaaaca gcaacatggg gggttaagag aaatttatgt gatgggtgct 2820 gatgaaagga ttgttcagtc aataattgag gcaatagcaa gagccatagg gaggtttttt 2880 gactcagaca cactttgtaa tcccaccaat aaaacaaaaa tacccgagac tcatggccag 2940 agagccaaga gaagatgtgg aaggtcagta tggacctgtg caacttcaga tgatgcgaga 3000 aaatggaatc aggggcattt tgtaactaaa tttgctctca tgttatgtga gttcacacct 3060 gaggaatggt ggccacttat cattagaggc tgttcaatgt tcacaaataa gtatatgatg 3120 atgaatcttg acttcatgag aatcatagac agccacaagg aattgaacat cgaagatgaa 3180 tttgtaacaa aattgttttc agcctaccat ggagagacag tggagccatg gatagaccaa 3240 gggaaaacat atctgaagac aagtacaggt atgatgcaag ggatactcca cttcacatct 3300 tcattattgc actcactaca ccaagaattt attagaacca cttccatgca gcttttcact 3360 aataaaatgg gctcagaagc ctcatcaaaa gtagtgtgtg atgttatgca aggctctgat 3420 gacagcagca tgattattag ttttccagca gaaaatgaga aaatgaagat gagatataag 3480 ttaatagcag caatgtgctt tagaatcaag aaaagcttag gcatttatat aggaatctac 3540 ccttctgaaa aatcaacacc taacactgat tttgtcatgg aatataattc tgagttcttc 3600 ttccattctc agcatatcag gccaactatt agatggatag cggcttcttg ctccctcccg 3660 gaggttgaga ctttggtagc tagacaagag gaagcagcaa atctgctgac tgctgtcaca 3720 gaaggtgggg gttcattctc cttagcggca atggtgcaac agtgtcaatg cacaatccat 3780 tatatgctaa tgggaatggg tgttagcgcc atatttgagc agttttcaaa agcaatctct 3840 aaatggatgg acccagggtt aggctttttc ttatttgata acccgtattc agctggcttg 3900 tctggtttca agtataatct ctatagagcc ataatgaact cagatttgaa gtatgtttac 3960 tcatttttca tgaggagagt caaaggatca tccaccaagg aagatgcaat tataagtgag 4020 tcatgtagtg tgagccctgg tggagccata gtgatgagtt ctactctaag atggggttca 4080 gttgagaaat tcaaaaggct tagaaacagg cttgacattc ctgaggactg gaaagacatg 4140 attaacaata gtcctgaagt gctatacagg gctcctcaga ctgggacaga gatcatgctc 4200 aggattgctg agaaagttca tagtcctggg gttgtctctt ctcttagcac tgggaatgca 4260 gtgtgtaaag tgatggcgtc atcggtttat tttctttcag catgcatttt tgaagatgca 4320 gggaatcaag agtataaaat cttgaataat gacaagtaca gccttcttca gaagattgtg 4380 gcttttgacc aattctcagg tggggaggat attagtcagg aagatctcct gttcctattc 4440 cctaacctgg tggaatttga ggcctttgac tctattattt atgataaagg gaaattcaac 4500 attgttccaa gagccagcca gagagaagct acccagacca ggatagtggt ttttgagcat 4560 cactcttctg caagagtggc tccagagaaa ttagttagtg acaagtggtt tggaacaaga 4620 aagagcaaaa tcggttcccc tggcttcagg caggaatgga ctagattgaa ggctattgtt 4680 aggtggctaa aagacaaccc agaagaaacc ctagatgcct ctccattctc aaatcatgtt 4740 caaattcgga actttttcgc aagaatggag ggaaagccaa gagtcataaa ggtgacaggg 4800 gcaccggtga agaagcgatc aggtatgagc aagatcgcaa tggcaataag agataacttt 4860 tgcaagactg gttttttgca agggctggag gatgaaattg gtcatagtag agccatgcaa 4920 gtagagaaat taaagcatta ccttttctcc attctgttag gcccatatac agaagatgcg 4980 aaactagagt atgttgtgaa aattctcaga gaagagccgc aggtcattct aaattataac 5040 gacaaaaggt caagagcaaa cataataagc ctcctgcaaa gatttatcaa aagtgaggtg 5100 gggatagcaa atttaattga agagatgaaa gctggagtct ttggagcatt tgtcaaaacc 5160 caacacttta gtcacagctc tatcaacaat aagtactatg gtagggggat ctggaaaggt 5220 gtaatggatg ggtatcaaat tcagattgac atagatggga aagagggcat gccatctcac 5280 ttgaccggaa tcaccatctc taactgttca aagccatggg tgttaacaca aagcataaaa 5340 gcatggtgtg atgacatgct tgtgaacaat aatgtagatg tttcaaaagg aaacacgaaa 5400 gccaactatt ggatgtacgg gtttaagatg tatggagcgt cttaccccta tggttgtccg 5460 ataaccttag tgaggcatga tataacaaat cttggtttgc tacatgacga tgacattgat 5520 ataaaagtca ggagaaacac aataaattta tttgtaagga gcacagataa aaggcctaga 5580 gatctccaca tcttatcata caccccatct gactctgaca ttagctctgt cagctccaaa 5640 catatcatga gagatgaata tttttcaaat aaagggtcat tcactgtaga acccacaagg 5700 tcctggatgc tttgccagcc tctgtcatgg atgttcgtga agcctgtact gcaagtgatg 5760 tcgggaaaga ggacaagtcc cagacaattg gacacagaaa gacttaagga aattgttagg 5820 ttgtgcactg aatctgctat caggaacaag gtgggaactg tctatagcca gaataaacca 5880 gagaagttga ttgagtctga gccaattgat atgagcgaga tgtttgatat gatgctagag 5940 gaggggatag atgatgtgtt tgaagacatt gctgattgcc taacagtgga tgaggatcct 6000 gactacatgg atgaggttga ctttgatgat gaaagtctca acctttttgg tcctgcccac 6060 tataaggaga tccagagcat gacagttctc gcccacccat tgatggacga attcattacc 6120 aagttggtga gtaaactggg gcgatcaaaa attaggaggt tgctagaaaa atcaatagtc 6180 actacagagc acagggctct ggctgaactc ctatttttgg ctttgggcag agatccgtca 6240 cagattaaag aggagttaat tcaaggggat agcccaacag acatccctga cgatctcctt 6300 gggtaatcat taaatgaatt gcgataaagg agaagaatag tgtaccaaca atgcatgaca 6360 gaaacacggt tttaggtttt ccaaaaattg ggcggtcttt gtgt 6404 //