Dbfetch
ID JF939814; SV 1; linear; genomic RNA; STD; VRL; 5672 BP. XX AC JF939814; XX DT 16-MAY-2013 (Rel. 116, Created) DT 06-NOV-2014 (Rel. 122, Last updated, Version 2) XX DE Cucurbit aphid-borne yellows virus strain Sq/2004/1.9, complete genome. XX KW . XX OS Cucurbit aphid-borne yellows virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5672 RX DOI; 10.1094/PHYTO-11-12-0280-R. RX PUBMED; 23802870. RA Kassem M.A., Juarez M., Gomez P., Mengual C.M., Sempere R.N., Plaza M., RA Elena S.F., Moreno A., Fereres A., Aranda M.A.; RT "Genetic diversity and potential vectors and reservoirs of Cucurbit RT aphid-borne yellows virus in southeastern Spain"; RL Phytopathology 103(11):1188-1197(2013). XX RN [2] RP 1-5672 RA Kassem M.A., Juarez M., Elena S.F., Aranda M.A.; RT ; RL Submitted (09-MAY-2011) to the INSDC. RL Patologia vegetal, CEBAS-CSIC, Campus Universitario de Espinardo, RL Espinardo, Murcia 30100, Spain XX DR MD5; d2312b513b556fc3fd6bb433a4af423d. DR EuropePMC; PMC4422679; 25946037. DR EuropePMC; PMC4677746; 26673519. DR EuropePMC; PMC5712577; 29238357. XX FH Key Location/Qualifiers FH FT source 1..5672 FT /organism="Cucurbit aphid-borne yellows virus" FT /strain="Sq/2004/1.9" FT /mol_type="genomic RNA" FT /country="Spain" FT /db_xref="taxon:91753" FT gene 21..737 FT /gene="P1" FT CDS 21..737 FT /codon_start=1 FT /gene="P1" FT /product="hypothetical protein P1" FT /db_xref="GOA:R4I756" FT /db_xref="InterPro:IPR006755" FT /db_xref="UniProtKB/TrEMBL:R4I756" FT /protein_id="AFK28056.1" FT /translation="MQIESVKQQLIFRPTRRTSINDRKLNVANFLINHSFFLAINGTNL FT LRFFLARLPLLISEQLSGDYVYTPGASKRIILARFHRHCGAPLPSSSAVDLRLPASKDV FT ARFFLARHYSRALGERIQRNQTSLFGGYAEFAKFINVWCSSISHRLGEFAPRNFTNSSI FT FVDLSNLGHSLCDLVLAQQVHDRDAYTRLALHIHRIYGEDGGLDFWRLANFPSKSWPFN FT GERYLEGSVVQKELQR" FT gene 142..3308 FT /gene="P2-3" FT CDS join(142..1480,1480..3308) FT /codon_start=1 FT /ribosomal_slippage FT /gene="P2-3" FT /product="replicase fusion protein" FT /db_xref="GOA:R4I7I8" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:R4I7I8" FT /protein_id="AFK28058.1" FT /translation="MAPTYFVFSLLVCLCSSVSSYQGTMFIPLEPANASYWLDSTDIAV FT PPSHPQVQLIYDCPPQKMLRDFSSHDITLELWERGYNETRQAFSEAMQNLQNLLMSGVR FT QFRTGLESLLHVILQTAAYLWTSLIWATACATWYLLSKYTIEMLTLASLYISTVYMVKM FT AAWIFGDLPISLLKAGLSMVRGISRVLWYRKSYNAEKSVEGYLSFKIPQNPPKNSVLQV FT QYKDGSHAGYATCVTLYNGTNGLLTAYHVAVPGSKVVSTRNGSKIPLSEFRSIMESEKR FT DLVLLAGPPNWEGTLACKAVQFQSAQNLCKSKASFYAYDGEGWISSNAEIVGIAEGKTH FT ASVLSNTDAGHSGTPYFNGRTVLGVHVGGAKDENFNYMAPIPPVYGLTSPAYEFETTAP FT QGRLFTQEEIEELIEEFSFSEITSIMGHRRFHQMHDSQRHQAEYEYEFGKRAGGRVRRN FT NRTRCHPSGWAQKWRRTVSCCSLLPEGQHVHTSEQTGEPHCYCSIPHHQCFYRHFVGNQ FT TGNNGQNRCPFDREASGPSLGRQSHEETEVAQTRQEKFEELTTDFSSFFDAQYTWEQGG FT EEAPGFDKVGFLPQFYHAKQKKSSNWGDKICKQHPEMGDLTKGFGWPQFGAKAELKSLR FT LQAARWLERAQSVKIPSSEEREHVIERCCRAYQAARTNGPMATRGDRLSWDNFLQDFKQ FT AVLSLEMDAGIGVPYIAYGKPTHRGWVEDKKLLPILARLTFNRLQKMLEVRYVDLSPAE FT LVREGLCDPIRVFVKGEPHKQSKLDEGRYRLIMSVSLVDQLVARVLFQNQNKREIALWR FT VVPSKPGFGLSTDEQVAEFMQILSAQAGLTPSELITEWRAHMIATDCSGFDWSVSDWLL FT EDDMEVRNRLTLDLNETTRRLRAAWLHCISNSVLCLSDGTLLAQRVPGVQKSGSYNTSS FT SNSRIRVMAAYHCGAEWAMAMGDDALESACSNLERYKSLGFKVEESSKLEFCSHIFERE FT DLAIPVNKAKMLYKLIHGYEPECGNVEVLINYLAACFSILNELRSDPSLVETLHQWLVA FT PVQPQKI" FT gene 142..2034 FT /gene="P2" FT CDS 142..2034 FT /codon_start=1 FT /gene="P2" FT /product="hypothetical protein P2" FT /db_xref="GOA:R4I7L7" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:R4I7L7" FT /protein_id="AFK28057.1" FT /translation="MAPTYFVFSLLVCLCSSVSSYQGTMFIPLEPANASYWLDSTDIAV FT PPSHPQVQLIYDCPPQKMLRDFSSHDITLELWERGYNETRQAFSEAMQNLQNLLMSGVR FT QFRTGLESLLHVILQTAAYLWTSLIWATACATWYLLSKYTIEMLTLASLYISTVYMVKM FT AAWIFGDLPISLLKAGLSMVRGISRVLWYRKSYNAEKSVEGYLSFKIPQNPPKNSVLQV FT QYKDGSHAGYATCVTLYNGTNGLLTAYHVAVPGSKVVSTRNGSKIPLSEFRSIMESEKR FT DLVLLAGPPNWEGTLACKAVQFQSAQNLCKSKASFYAYDGEGWISSNAEIVGIAEGKTH FT ASVLSNTDAGHSGTPYFNGRTVLGVHVGGAKDENFNYMAPIPPVYGLTSPAYEFETTAP FT QGRLFTQEEIEELIEEFSFSEITSIMGHRRFHQMHDSQRHQAEYEYESGNGQAAASAET FT TAPDATPAVGHKSGDAQSPAAPSSPKVNTYTPPNKRENRTATAASPTTSASTDTLSEIK FT QAIMDKIDVHSIEKQVVQALADKAMKKPKSRRRGKRSSKNSQPTSQVSLMPSTPGNKAG FT KKPQDSTRSDSSPSFTTLNKRKARIGETKSANSTQKWVISQRASGGPSSAQKPN" FT gene 3508..4107 FT /gene="CP" FT CDS 3508..4107 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:R4I786" FT /db_xref="InterPro:IPR001517" FT /db_xref="UniProtKB/TrEMBL:R4I786" FT /protein_id="AFK28059.1" FT /translation="MNTAAARNQNAGRRRRRNQRSARRDRVVVVNPIGGPPRGRRQRRN FT RRRPNRGGRVRRGSPGETFVFSKDNLTGSSTGSITFGPSLSESPAFSSGILKAYHEYKI FT IMVQLEFISEASSTSSGSISYELDPHCKLSSLQSTINKFGITKNGLRRWTAKQINGMEW FT HDATEDQFKILYKGNGSSSVAGSFRITIKCQVQNPK" FT gene 3536..4111 FT /gene="MP" FT CDS 3536..4111 FT /codon_start=1 FT /gene="MP" FT /product="movement protein" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:R4I823" FT /protein_id="AFK28060.1" FT /translation="MQGGGGEEISALHGATAWLWSTPLGDHRAEDDNEETADALIEEAE FT LEEEARAKHLYFQRTISRAVPQEVSPSGRLYQRAQHSALEYSRPTMNIRSSWSSWSSSP FT RPLPPPRVPSLMSWTPTASLAPSNPRLISLESPRMDCDVGPLSRSTGWNGTMQPKTNSR FT SSTKGMDLPRLRAASESPSSARSKTRNR" FT gene <4108..5511 FT /gene="P6" FT CDS <4108..5511 FT /codon_start=1 FT /gene="P6" FT /product="hypothetical protein" FT /note="read-through protein" FT /db_xref="GOA:R4I757" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:R4I757" FT /protein_id="AFK28061.1" FT /translation="VDGSSPPPPGPSPTPPPPPPPQPQPQPCAQRFWGYEGNPQNKILT FT AENSRNIDSRPLNFVQMYKWEDEKWDKVNLQAGYSRNDRRCMETYLTIPADKGKFHVYL FT EADGEFVVKHIGGELDGSWLGNIAYDVSQRGWNVGNYKGCKIKNYQSNTVFVAGHPDAT FT MNGKSFDTARAVEVDWFASFELECDDEEGSWAIYPPPIQKDSSYNYTVSYGNYTEKYCE FT WGAISVSIDEDNNGNVPRRIPRKGAMAWSTPEPSLSGDDSQRQDFNTPSPKERGSDILE FT SEEKKEEDNLLDLEEENIPDVDDDDLWKGISRASAAGTTEDDRASTSSRLRGNLKPKGL FT PKPQPTRTIAEFNPEPDLIEAWRPDLAPGYSKADVAAATVIAGGSIHEGRDMLERREAK FT VMDSRKKWGILSSTSSLTSGALKKLSAQSEKLAMLSTGERVQYQRLKNSMGSTVAAEYL FT EKVLADKTS" XX SQ Sequence 5672 BP; 1564 A; 1445 C; 1397 G; 1266 T; 0 other; acaaaagata cgagcgggtg atgcaaattg agtctgtcaa gcaacaatta atcttcagac 60 ctacccgacg cacgagcata aacgatcgca agttaaacgt agctaacttt ctgatcaacc 120 actccttctt tttagcgatc aatggcacca acctacttcg ttttttcctt gctcgtctgc 180 ctctgctcat cagtgagcag ttatcagggg actatgttta tacccctgga gccagcaaac 240 gcatcatact ggctcgattc caccgacatt gcggtgcccc cctcccatcc tcaagtgcag 300 ttgatctacg actgcccgcc tcaaaagatg ttgcgcgatt tttcctcgca cgacattact 360 ctagagctct gggagagagg atacaacgaa accagacaag ccttttcgga ggctatgcag 420 aatttgcaaa atttattaat gtctggtgtt cgtcaatttc gcacaggctt ggagagtttg 480 ctccacgtaa ttttacaaac agcagcatat ttgtggacct ctctaatttg ggccacagcc 540 tgtgcgactt ggtacttgct cagcaagtac acgatcgaga tgcttacact cgcctcgctt 600 tacatatcca ccgtatatat ggtgaagatg gcggcttgga tttttggcga cttgccaatt 660 tcccttctaa aagctggcct ttcaatggtg agaggtatct cgagggttct gtggtacaga 720 aagagctaca acgctgagaa atccgtagag ggttatctct cattcaagat accacaaaat 780 ccccccaaaa actcggtttt gcaggtccaa tacaaagacg gatcgcatgc cgggtatgct 840 acctgtgtga cgctgtacaa tggaacaaat gggcttctta cagcctatca cgtcgctgtc 900 ccaggtagca aagtcgtctc caccaggaac ggaagtaaga ttcccctctc tgagttcaga 960 tccatcatgg agtctgaaaa gagggatctc gtgctattgg cgggtcctcc aaactgggag 1020 ggtaccctag cctgcaaggc tgttcagttc caatctgccc agaacctttg caaatcaaag 1080 gcctccttct acgcttacga cggagaggga tggatctcat ccaatgctga aattgttggc 1140 attgcagagg gcaaaaccca tgcatccgtg ttaagcaata cggatgctgg tcacagtggc 1200 accccgtatt tcaacggaag aacagttttg ggtgtccacg ttggtggagc taaagacgaa 1260 aattttaatt atatggcccc gataccgccc gtttatggtc ttactagccc tgcctatgaa 1320 tttgagacca cggcacccca aggacgcttg ttcacacaag aagaaataga agaactcatt 1380 gaagaatttt ccttcagtga gatcacgtcc ataatggggc atcgccgatt ccaccaaatg 1440 cacgactcac agcgacatca agccgaatac gaatatgagt cgggaaacgg gcaggcggcc 1500 gcgtccgccg aaacaaccgc acccgatgcc accccagcgg ttgggcacaa aagtggagac 1560 gcacagtctc ctgctgctcc ctcctccccg aaggtcaaca cgtacacacc tccgaacaaa 1620 cgggagaacc gcactgctac tgcagcatcc cccaccacca gtgcttctac cgacactttg 1680 tcggaaatca aacaggcaat aatggacaaa atcgatgtcc attcgataga gaagcaagtg 1740 gtccaagcct tggcagacaa agccatgaag aaaccgaagt cgcgcagacg cggcaagaga 1800 agttcgaaga actcacaacc gacttctcaa gtttctttga tgcccagtac acctgggaac 1860 aaggcgggga agaagcccca ggattcgaca aggtcggatt cctcccccag ttttaccacg 1920 ctaaacaaaa gaaaagctcg aattggggag acaaaatctg caaacagcac ccagaaatgg 1980 gtgatctcac aaagggcttc gggtggcccc agttcggcgc aaaagccgaa ctaaaatcgc 2040 tgcggctaca agccgcgcgt tggctggaac gtgcccagtc agttaaaatc ccctcgtctg 2100 aggagcggga gcacgttata gagagatgct gtcgggcata ccaagctgcc agaactaatg 2160 gcccgatggc aacgagagga gatcgacttt cctgggataa cttcctacag gattttaaac 2220 aggcggtcct ctcgttggaa atggacgcag gcatcggagt tccgtacata gcttacggca 2280 agccaaccca ccgcgggtgg gttgaagata agaaactcct tccgatattg gctcgtctca 2340 ccttcaaccg gctacagaag atgttggagg taagatatgt tgacttgtcg cctgcagagc 2400 ttgtgcgaga gggtctctgt gaccctattc gagtgtttgt taaaggtgaa ccgcacaagc 2460 aatcgaaatt ggatgaaggc cgctaccgcc tcatcatgag cgtctctcta gttgaccaat 2520 tggtagcccg ggttttattc cagaatcaaa acaagcgcga aatagcgttg tggagagtgg 2580 ttccctccaa acccggtttt ggcttatcca cggatgagca agttgcggag ttcatgcaga 2640 tcctctccgc ccaagctggg ctaacgcctt cggaattgat taccgagtgg cgagcccaca 2700 tgatagcaac tgactgctcc ggctttgact ggagcgtttc ggactggctc cttgaagatg 2760 atatggaggt ccgaaaccgc ctgacgctcg atttaaacga gaccacgcgc cgtttacgcg 2820 cagcgtggtt acactgcata tcgaacagcg tcctctgcct ttcagacgga acattattag 2880 cgcagagagt cccaggcgtg cagaagagtg gcagctacaa cacgtcatcg agcaattccc 2940 gtattcgggt gatggctgcc taccactgcg gcgcagaatg ggctatggcg atgggcgatg 3000 acgccctcga gtcagcttgc tcgaacctcg agcgttacaa atcgctcggt ttcaaagtcg 3060 aggagtcctc aaaactggaa ttctgttctc atatttttga gagagaggat ctcgccattc 3120 cggttaacaa ggccaaaatg ctttacaagc ttatacatgg ctatgaaccg gaatgcggca 3180 atgtggaagt tctgattaat tatctggccg cctgcttttc tattcttaat gaactgcggt 3240 ctgatccttc ccttgtcgaa actctccatc agtggctggt cgctccagta cagccacaaa 3300 agatataagg ggagtataaa gaacactagc caagcacaca cgagctgcaa gcattggaag 3360 tctgagtctc gttaccaaga gtccacacaa tagattataa gtttctcgca ggattttcaa 3420 gcggtctatt gtctgcaata cctattacgg taatcggact ctattttgtc tacctaaaga 3480 tttcagcaca cgtgcgctca attgttaatg aatacggccg cggctagaaa tcaaaatgca 3540 gggaggcgga ggcgaagaaa tcagcgctct gcacggcgcg accgcgtggt tgtggtcaac 3600 cccattgggg gaccaccgcg cggaagacga caacgaagaa accgccgacg ccctaatcga 3660 ggaggcagag ttagaagagg aagcccgggc gaaacatttg tattttcaaa ggacaatctc 3720 acgggcagtt ccacaggaag tatcaccttc gggccgtctc tatcagagag cccagcattc 3780 agctctggaa tactcaaggc ctaccatgaa tataagatca tcatggtcca gctggagttc 3840 atctccgagg cctcttccac ctcctcgggt tccatctctt atgagttgga cccccactgc 3900 aagcttagct ccctccaatc cacgattaat aagtttggaa tcaccaagaa tggattgcga 3960 cgttggaccg ctaagcagat caacgggatg gaatggcacg atgcaaccga agaccaattc 4020 aagatcctct acaaagggaa tggatcttcc tcggttgcgg gcagcttcag aatcaccatc 4080 aagtgccagg tccaaaaccc gaaataggta gacggcagtt cccccccccc cccaggtcct 4140 agcccaaccc caccacctcc accaccccct cagcctcaac cccaaccttg cgctcagcgc 4200 ttttggggtt atgaaggcaa cccacaaaat aaaatactca cggctgaaaa ttcaaggaat 4260 attgattccc ggccgttgaa ctttgtgcaa atgtacaagt gggaagacga gaagtgggac 4320 aaggtcaact tgcaagccgg atattctcgc aatgaccgac gttgtatgga gacgtacctc 4380 acaattccag cagacaaagg aaaatttcac gtttatcttg aagctgacgg tgagtttgtc 4440 gtcaagcaca tcggtggcga gctcgacggt agttggcttg gaaacatcgc atacgatgtt 4500 tcccaaagag gttggaacgt agggaattac aaaggctgta aaattaaaaa ttatcaatct 4560 aacacagtct ttgtggcagg acatcccgat gcaacaatga atggcaaaag ttttgatact 4620 gcacgggctg ttgaagtcga ttggttcgct tccttcgaat tggaatgtga tgatgaagaa 4680 ggaagctggg ctatataccc tccccccata caaaaggatt cttcgtataa ttacaccgtc 4740 tcatacggga attacacgga gaaatattgc gagtggggag cgatttcagt atcaatcgac 4800 gaggataata acgggaacgt gccaagaaga ataccacgca agggggcaat ggcgtggtcc 4860 acccctgaac cctctctttc aggggatgat agtcaaagac aagactttaa cactccttcg 4920 cccaaagagc gaggttccga tattctggaa tcggaagaaa agaaggaaga ggacaacctt 4980 cttgatcttg aggaagaaaa tatacccgac gttgatgatg acgatttgtg gaagggtatt 5040 tcccgtgcct cagcagccgg gaccactgag gatgatcgag cgtctacaag ctctcgtctt 5100 cgtggcaacc tcaagccaaa aggcctacca aaaccacagc ctactcgaac catcgctgag 5160 ttcaatcctg aacctgatct aatagaggcg tggaggcctg atctagcacc tggatactcc 5220 aaagcggacg tcgccgcagc gacagtgatc gcaggaggga gtatccacga gggaagagat 5280 atgctcgagc gtagagaagc aaaagtaatg gatagtagga agaaatgggg aatcctttct 5340 tcaacttcct ctcttactag cggagcattg aagaagctca gcgcacagtc ggaaaagctt 5400 gccatgttat caactggcga gcgagtgcaa tatcaacgat tgaagaattc aatgggttca 5460 actgtcgcgg ctgagtacct cgaaaaggtg ttagctgata aaacctcctg aagagttcct 5520 actactctga agtagcgcgg caccggaata cgcggcgaag ctcaatccgg aaactcaaga 5580 acgagagtat aaacgttaac gactccgaaa ggataggcaa cgaacgttcc cactcagtgg 5640 aaacagaggg attccccctg gcgtttcggt gt 5672 //