ID JF939813; SV 1; linear; genomic RNA; STD; VRL; 5675 BP. XX AC JF939813; XX DT 16-MAY-2013 (Rel. 116, Created) DT 06-NOV-2014 (Rel. 122, Last updated, Version 2) XX DE Cucurbit aphid-borne yellows virus strain Sq/2005/9.2, complete genome. XX KW . XX OS Cucurbit aphid-borne yellows virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5675 RX DOI; 10.1094/PHYTO-11-12-0280-R. RX PUBMED; 23802870. RA Kassem M.A., Juarez M., Gomez P., Mengual C.M., Sempere R.N., Plaza M., RA Elena S.F., Moreno A., Fereres A., Aranda M.A.; RT "Genetic diversity and potential vectors and reservoirs of Cucurbit RT aphid-borne yellows virus in southeastern Spain"; RL Phytopathology 103(11):1188-1197(2013). XX RN [2] RP 1-5675 RA Kassem M.A., Juarez M., Elena S.F., Aranda M.A.; RT ; RL Submitted (09-MAY-2011) to the INSDC. RL Patologia vegetal, CEBAS-CSIC, Campus Universitario de Espinardo, RL Espinardo, Murcia 30100, Spain XX DR MD5; 6f04f7f89242e93a6c84a517b7de5901. DR EuropePMC; PMC4422679; 25946037. XX FH Key Location/Qualifiers FH FT source 1..5675 FT /organism="Cucurbit aphid-borne yellows virus" FT /strain="Sq/2005/9.2" FT /mol_type="genomic RNA" FT /country="Spain" FT /db_xref="taxon:91753" FT gene 21..740 FT /gene="P1" FT CDS 21..740 FT /codon_start=1 FT /gene="P1" FT /product="hypothetical protein P1" FT /db_xref="GOA:R4I811" FT /db_xref="InterPro:IPR006755" FT /db_xref="UniProtKB/TrEMBL:R4I811" FT /protein_id="AFK28050.1" FT /translation="MQIETVERQLIFNPTRHASVNERRLFVADFLFNCVSLLAINGDQF FT LLRCFLARLPLLISEQLSGDYVYTPGASKRVKLARFHRHCGAPLPSPSAVDLRLPARKD FT AARFFLARHYSRAMGERVQRNQTSLFKGLAEFAKFLNVWCSSVSRRFREFAPRHFTKHE FT IFVDLSYLGLSLRNLVLAPQVHNGNAYARFALCIHRIYGEDGGLDFWRLANLPSKSWPF FT NGEKHFQGSVVQKELQC" FT gene 142..3308 FT /gene="P2-3" FT CDS join(142..1483,1483..3308) FT /codon_start=1 FT /ribosomal_slippage FT /gene="P2-3" FT /product="replicase fusion protein" FT /db_xref="GOA:R4I7L5" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:R4I7L5" FT /protein_id="AFK28052.1" FT /translation="MATNSYFAVFLLACLCSLVSSYQGTMFIPLEPVNVSNWLDSTATA FT VPPSHHQVQLIYDCPPEKMLRDFSSRDITQELWGRGFNETRLASLKALRSLQNFLTSGV FT RLFHAGLESLLHVTLQNMRYLWTSLIWASACAIWYLLRKYTMEMLMLASLYVFTVYMVK FT MAAWIFGDLPIFLLKAGLSMVRSISKVLWFKRNYNAEKSVKGFLSFKIPQSPPKHSVLQ FT VQYEDGSHAGYATCVTLYNGTNGLLTAYHVAAPGSKIVSTRNGNKIPLSEFRSIMESEK FT GDFLLLAGPPNWEGTLACKAVQFQSAHNLCRSKASFYAYDGEGWTSSNAEIVGIAQGRL FT HASVLSNTDAGHSGTPYFNGRTVLGVHVGGAKEENFNYMAPIPPVKGLTSPNYAFESSA FT PQGRLFSQEEVDELIDEFSFSEIESIMKHRRSQQKHGSKQHQAEHLYEFGKRAGGRVRR FT NNRTRCHPSGWAQKWRRTVSCCSLFPEGQHVHTSEQTGKPHCFCSIPHHQCFYRHFVGN FT QTSNNGQNQCPFDRETGGPSLGGQSHEETTTQTRKEKFEEISANFSSFFNAQYNWEQGG FT EEAPGFDKVGSLPQFYYARQKTNTHWGDKICKQHPEMGDLTKGFGWPQFGAEAELKSLR FT LQAARWLERAQSVKIPSSEEREHVIERCCRAYQAARTNSPIATRGDRLSWDNFLEDFKQ FT AVLSLEFDAGIGVPYIAYGRPTHRGWVEDPQLLPILARLTFNRLQKMLEVRHVDLSPED FT LVREGLCDPIRVFVKGEPHKQAKLDEGRYRLIMSVSLVDQLVARVLFQNQNKREIALWR FT VVPSKPGFGLSTDEQVAEFLQILSAQVGLTPSELIPEWRAHMIATDCSGFDWSVSDWLL FT EDDMEVRNRLTLDLNETTRRLRAAWLHCISNSVLCLSDGTLLAQRVPGVQKSGSYNTSS FT SNSRIRVMAAYHCGAEWAMAMGDDALESACSNLERYKSLGFKVEESSKLEFCSHIFEKE FT DLAIPVNKAKMLYKLIHGYEPECGNVEVLINYLAACFSILNELRSDPSLVKTLQQWLVD FT PVQPLKI" FT gene 142..2034 FT /gene="P2" FT CDS 142..2034 FT /codon_start=1 FT /gene="P2" FT /product="hypothetical protein P2" FT /db_xref="GOA:R4I755" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:R4I755" FT /protein_id="AFK28051.1" FT /translation="MATNSYFAVFLLACLCSLVSSYQGTMFIPLEPVNVSNWLDSTATA FT VPPSHHQVQLIYDCPPEKMLRDFSSRDITQELWGRGFNETRLASLKALRSLQNFLTSGV FT RLFHAGLESLLHVTLQNMRYLWTSLIWASACAIWYLLRKYTMEMLMLASLYVFTVYMVK FT MAAWIFGDLPIFLLKAGLSMVRSISKVLWFKRNYNAEKSVKGFLSFKIPQSPPKHSVLQ FT VQYEDGSHAGYATCVTLYNGTNGLLTAYHVAAPGSKIVSTRNGNKIPLSEFRSIMESEK FT GDFLLLAGPPNWEGTLACKAVQFQSAHNLCRSKASFYAYDGEGWTSSNAEIVGIAQGRL FT HASVLSNTDAGHSGTPYFNGRTVLGVHVGGAKEENFNYMAPIPPVKGLTSPNYAFESSA FT PQGRLFSQEEVDELIDEFSFSEIESIMKHRRSQQKHGSKQHQAEHLYESGNGQAAASAE FT TTAPDATPAVGRKSGDAQSPVAPSSRKVNTYIPPNKRENRTASAASPTTNASTDTLSEI FT KQAIMDKINVHSIEKQVVQALADKAMKKPRRKRGKRSSKKSQPTSPVSSTPSTTGNKAG FT KKPQDSTRSDPSPSFTTLDKRRTRIGETKSANSTQKWVISQRASGGPSSAQKLN" FT gene 3508..4107 FT /gene="CP" FT CDS 3508..4107 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:R4I7I7" FT /db_xref="InterPro:IPR001517" FT /db_xref="UniProtKB/TrEMBL:R4I7I7" FT /protein_id="AFK28053.1" FT /translation="MNTVVARNQNAGRRRRRNQRPTRRERVVVVNPIGGPPRGRRQRRN FT RRRPNRGGRARRGSPGETFVFSKDNITGSSSGSITFGPSLSESPAFSSGILKAYHEYKI FT IMVQLEFISEASSTSSGSISYELDPHCKLSSLQSTINKFGVTRNGMRRWTAKQINGLEW FT HDATEDQFKILYKGNGSSSVAGSFRITIKCQVQNPK" FT gene 3536..4111 FT /gene="MP" FT CDS 3536..4111 FT /codon_start=1 FT /gene="MP" FT /product="movement protein" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:R4I784" FT /protein_id="AFK28054.1" FT /translation="MQGGEGGEISALHGASAWLWSTPLGDHRAEDDNEETADALIEEAE FT LEEEARAKHSYFQRTISRAVPQEVSPSGRLYQRAQHSALEYSRPTMNIKSLWSSWSSSP FT RPLPPPRVPSLMSWTPTASLAPSNPRLINLESPGMECGVGQLSKSTGWNGTMQPRTNSR FT SSIKGMDLPRLQAASESPSSAKSRIRNR" FT gene <4108..5514 FT /gene="P6" FT CDS <4108..5514 FT /codon_start=1 FT /gene="P6" FT /product="hypothetical protein" FT /note="read-through protein" FT /db_xref="GOA:R4I816" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:R4I816" FT /protein_id="AFK28055.1" FT /translation="VDGSPPPPPGPSPTPPPPPPPQPQPQPRAPRFWGYEGNPQNKILT FT AENSRNIDSRPLNFVQMYKWEDERWDKVNLQAGYSRNDRRCMETYLTIPADKGKFHVYL FT EADGEFVVKHIGGELDGSWLGNIAYDVSQRGWNIGNYKGCKITNYQSNTVFVAGHPDAT FT MNGKSFDTARAVEVDWFASFELECDDEEGSWAIYPPPIQKDSSYNYTVSYGNYTEKYCE FT WGAISVSIDEDNDNGDVPRRIPRKGAMAWSTPEPSFSGDDSQRQDFNTPSPKERGSDIL FT ESEEKKEEDNLLDLEEENIPDVDDDDLWKGISRASAAGTTEDDRASTSSRLRGNLKPKG FT LPKPQPTRTITEFNPEPDLIEAWRPDLAPGYSKADVAAATVIAGGSIHEGRDMLERREA FT KVMDSRKKWGILSSTSSLTSGALKKLSAQSEKLAMLSTGERVQYQRLKNSMGSTVAAEY FT LEKVLADKTS" XX SQ Sequence 5675 BP; 1567 A; 1436 C; 1389 G; 1283 T; 0 other; acaaaagata cgagcgggtg atgcaaattg agaccgttga gcgacaactc attttcaacc 60 ccacacgaca cgcaagcgta aacgaacgaa ggctatttgt agctgatttt ctgttcaact 120 gcgtatcttt attagcaatc aatggcgacc aattcctact tcgctgtttt cttgctcgct 180 tgcctttgct cattagtgag cagctatcag gggactatgt ttatacccct ggagccagta 240 aacgtgtcaa actggctcga ttccaccgcc actgcggtgc ccccctccca tcaccaagtg 300 cagttgatct acgactgccc gcccgaaaag atgctgcgcg atttttcctc gcgcgacatt 360 actcaagagc tatgggggag agggttcaac gaaaccagac tagcctcttt aaaggccttg 420 cggagtttgc aaaatttctt aacgtctggt gttcgtctgt ttcacgcagg tttagagagt 480 ttgctccacg tcactttaca aaacatgaga tatttgtgga cctctcttat ttgggcctca 540 gcctgcgcaa tctggtactt gctccgcaag tacacaatgg aaatgcttat gctcgcttcg 600 ctctatgtat tcaccgtata tatggtgaag atggcggctt ggatttttgg cgacttgcca 660 atcttccttc taaaagctgg cctttcaatg gtgagaagca tttccaaggt tctgtggttc 720 aaaaggaact acaatgctga gaaatccgtc aaaggttttc tctcattcaa aatcccacag 780 agccctccta aacactcggt cttgcaagtc caatatgagg atggatcgca tgccgggtat 840 gctacctgcg tgactctata caatggaaca aatgggcttc ttacagctta tcatgttgca 900 gccccaggta gcaagatagt ctccaccagg aacggaaaca agatccccct atctgaattc 960 agatctatta tggaatctga gaagggagat ttcttgctgc tggcgggtcc tccaaactgg 1020 gaaggaaccc tagcctgcaa agcagtccag ttccaatctg cccacaatct ttgcagatca 1080 aaggcctcct tctacgctta tgacggggaa ggatggactt catccaatgc cgaaatagtc 1140 ggcattgcgc agggcagact ccacgcgtct gtgttaagca acacggatgc tggtcacagt 1200 ggcaccccgt acttcaatgg aagaacagtt ttgggtgtcc acgttggtgg agctaaagag 1260 gagaatttta attacatggc ccccataccg cccgtaaaag gcctcaccag ccctaattac 1320 gcatttgaga gctcggcgcc tcaaggacgt ttgttctcac aagaagaagt cgacgaactc 1380 attgatgagt tctccttcag tgagatcgaa tctataatga aacatcgccg ctctcaacaa 1440 aaacacggct caaagcaaca ccaagctgaa catttatatg agtcgggaaa cgggcaggcg 1500 gccgcgtccg ccgaaacaac cgcacccgat gccaccccag cggttgggcg caaaagtgga 1560 gacgcacagt ctcctgttgc tccctcttcc cggaaggtca acacgtacat acctccgaac 1620 aaacgggaaa accgcactgc ttctgcagca tcccccacca ccaatgcttc taccgacact 1680 ttgtcggaaa tcaaacaagc aataatggac aaaatcaatg tccattcgat agagaaacag 1740 gtggtccaag ccttggcgga caaagccatg aagaaaccac gacgcaaacg cggaaagaga 1800 agttcgaaga aatctcagcc aacttctcca gtttcttcaa cgcccagtac aactgggaac 1860 aaggcgggga agaagcccca ggattcgaca aggtcggatc cctcccccag ttttactacg 1920 ctagacaaaa gacgaacacg cattggggag acaaaatctg caaacagcac ccagaaatgg 1980 gtgatctcac aaagggcttc gggtggcccc agttcggcgc agaagctgaa ctgaaatcgc 2040 tgcggctaca agccgcgcgt tggctggaac gtgcccagtc agttaaaatc ccctcatctg 2100 aggagcggga gcacgtgata gagagatgct gtcgggcata tcaagcagcc agaaccaata 2160 gcccgatagc gacgagagga gatcgacttt cctgggataa cttcctagaa gattttaaac 2220 aggcggtcct ctcgttggaa tttgatgcag gcataggagt tccatacata gcttacggca 2280 gaccgaccca ccgagggtgg gtcgaagatc cacaactcct accgatattg gctcgtctca 2340 ccttcaaccg tttacagaag atgttggagg taagacacgt tgacttatcg cctgaagatc 2400 ttgtgcgaga gggtctctgt gaccctattc gagtgttcgt aaaaggagaa ccgcacaagc 2460 aagcaaaact tgatgaaggc cgctaccgcc tcatcatgag cgtctctcta gttgaccaac 2520 tggtagcccg ggttttattt caaaatcaaa acaaacgcga gatcgcgtta tggagggtgg 2580 ttccctctaa acccggtttt ggcttgtcca cggacgagca agtggcggag ttcctgcaga 2640 ttctctccgc ccaagttggg ctaacgcctt cggaattgat ccccgagtgg cgagcccata 2700 tgatagcaac tgactgctcc ggttttgact ggagcgtttc ggactggctt cttgaagacg 2760 atatggaagt ccgaaaccgc ctgacgcttg atttaaacga gaccacgcgc cgcttacgtg 2820 cagcgtggtt acattgtata tcaaacagcg tcctctgcct ttctgatgga acattattgg 2880 cgcagagagt cccaggcgtg cagaagagtg gcagctataa cacatcatca agtaattccc 2940 gcattcgggt gatggctgcc taccactgcg gcgctgaatg ggctatggcg atgggcgatg 3000 acgcccttga gtcagcttgc tcaaacctcg agcgttacaa atcgctcggt tttaaagtcg 3060 aggagtcctc aaaactggaa ttctgttctc acatctttga gaaagaggac ctcgccattc 3120 cggtcaacaa agccaaaatg ctttacaagc tcatacacgg ttatgagccg gaatgtggca 3180 atgtggaagt attgatcaat tatctggccg cctgcttttc tattcttaat gaattgcggt 3240 ctgatccttc ccttgtcaaa actctccaac agtggctggt cgatccagtg cagccactaa 3300 agatataagg ggagtataaa gaacactagc caagcataca cgagttgcaa gcattggaag 3360 tataagtctc gttaccaaga gtccacacaa tagattacaa atttctcgca ggattttcaa 3420 gcggtctatt gtctgctata cccatcacgg tgattggact ctattttgtc tacctaaaga 3480 tttcgtcaca cgtgcgatca attgttaatg aatacggtcg tggctagaaa tcaaaatgca 3540 gggaggcgaa ggcggagaaa tcagcgccct acacggcgcg agcgcgtggt tgtggtcaac 3600 cccattgggg gaccaccgcg cggaagacga caacgaagaa accgccgacg ccctaatcga 3660 ggaggcagag ctagaagagg aagcccgggc gaaacattcg tattttcaaa ggacaatatc 3720 acgggcagtt cctcaggaag tatcaccttc gggccgtctc tatcagagag cccagcattc 3780 agctctggaa tactcaaggc ctaccatgaa tataaaatca ttatggtcca gttggagttc 3840 atctccgagg cctcttccac ctcctcgggt tccatctctt atgagttgga cccccactgc 3900 aagcttagct ccctccaatc cacgattaat aaatttggag tcaccaggaa tggaatgcgg 3960 cgttggacag ctaagcaaat caacgggttg gaatggcacg atgcaaccga ggaccaattc 4020 aagatcctct ataaagggaa tggatcttcc tcggttgcag gcagcttccg aatcaccatc 4080 aagtgccaag tccagaatcc gaaataggta gacggcagtc cccccccccc cccaggtcct 4140 agcccaaccc caccacctcc accaccccct cagcctcaac cccagccccg cgccccgcga 4200 ttctggggtt atgaaggcaa cccacagaac aagattctca cggctgagaa ttcaaggaat 4260 atagattcca gaccgttgaa ctttgtacaa atgtacaaat gggaagacga gaggtgggat 4320 aaggtcaact tacaagccgg gtactcccgc aacgatcgac gttgcatgga gacgtacctc 4380 acaattccag cagataaagg aaaatttcat gtttatcttg aagctgatgg tgagtttgtc 4440 gtcaagcata ttggcggcga gttggacggt agttggctcg gcaacatcgc ttatgatgtt 4500 tcccaacgag gttggaatat agggaattac aaaggctgta aaattacaaa ttatcaatcc 4560 aatacagtct ttgtggcagg acaccccgac gcaacaatga atggcaaaag ttttgacact 4620 gcgcgggctg ttgaagtcga ttggttcgct tcctttgaac ttgaatgtga tgatgaagaa 4680 ggaagctggg ctatataccc cccccccata cagaaggatt cttcgtataa ttacaccgtc 4740 tcgtacggaa attacacgga gaaatattgc gagtgggggg caatttcagt atcaattgac 4800 gaagataatg acaatgggga cgtgccaaga agaataccac gcaagggggc aatggcgtgg 4860 tcaacccctg aaccctcttt ttcaggggat gatagtcaaa gacaagactt taacactcct 4920 tcgcccaaag agcgaggttc cgatattctg gaatcggaag aaaagaagga agaggacaac 4980 cttcttgatc ttgaggaaga aaatataccc gatgttgatg atgacgattt gtggaagggt 5040 atttcccgcg cctcagcagc cgggaccact gaggatgatc gagcgtctac aagctctcgt 5100 cttcgtggca acctcaagcc aaaaggccta ccaaaaccac agcctactcg aaccatcact 5160 gagttcaatc ctgaacctga tctaatagag gcgtggaggc ctgatctagc acctggatat 5220 tccaaagcgg acgtcgccgc agcgacagtg atcgcaggag ggagtatcca cgagggcaga 5280 gatatgctcg agcgtagaga agcaaaagta atggatagta ggaagaaatg gggaatcctt 5340 tcctcaacat cctctcttac tagcggagca ttgaagaagc tcagcgcaca gtcggaaaag 5400 cttgccatgt tatcaactgg cgagcgagtg caatatcaac gattgaagaa ttcaatgggt 5460 tcaactgtcg cggctgagta cctcgaaaag gtgttggctg ataaaacctc ctgaagagtt 5520 cctactactc tgaagtagcg cggcaccgga atacgcggcg aagctcaatc cggaaactca 5580 agaacgagag tataaacgtt aacgactccg aaaggatagg caacgaacgt tcccactcag 5640 tggaaacaga gggattcccc ctggcgtttc ggtgt 5675 //