ID JF939812; SV 1; linear; genomic RNA; STD; VRL; 5672 BP. XX AC JF939812; XX DT 16-MAY-2013 (Rel. 116, Created) DT 06-NOV-2014 (Rel. 122, Last updated, Version 2) XX DE Cucurbit aphid-borne yellows virus strain Sq/2003/7.2, complete genome. XX KW . XX OS Cucurbit aphid-borne yellows virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5672 RX DOI; 10.1094/PHYTO-11-12-0280-R. RX PUBMED; 23802870. RA Kassem M.A., Juarez M., Gomez P., Mengual C.M., Sempere R.N., Plaza M., RA Elena S.F., Moreno A., Fereres A., Aranda M.A.; RT "Genetic diversity and potential vectors and reservoirs of Cucurbit RT aphid-borne yellows virus in southeastern Spain"; RL Phytopathology 103(11):1188-1197(2013). XX RN [2] RP 1-5672 RA Kassem M.A., Juarez M., Elena S.F., Aranda M.A.; RT ; RL Submitted (09-MAY-2011) to the INSDC. RL Patologia vegetal, CEBAS-CSIC, Campus Universitario de Espinardo, RL Espinardo, Murcia 30100, Spain XX DR MD5; 057963cda63c30d143a3f2823a602b8b. DR EuropePMC; PMC4422679; 25946037. DR EuropePMC; PMC4677746; 26673519. XX FH Key Location/Qualifiers FH FT source 1..5672 FT /organism="Cucurbit aphid-borne yellows virus" FT /strain="Sq/2003/7.2" FT /mol_type="genomic RNA" FT /country="Spain" FT /db_xref="taxon:91753" FT gene 21..737 FT /gene="P1" FT CDS 21..737 FT /codon_start=1 FT /gene="P1" FT /product="hypothetical protein P1" FT /db_xref="GOA:R4I780" FT /db_xref="InterPro:IPR006755" FT /db_xref="UniProtKB/TrEMBL:R4I780" FT /protein_id="AFK28044.1" FT /translation="MQIESVKQQLIFRPTRRTSTNDRKLNVANFLINHSFFLAINGTNL FT LRLFLARLPLLISEQLSGDYVYTPGASKRIILARFHRHCGAPLPSSSAVDLRLPASKDV FT ARFFLARHYSRALGERIQRNQTSLFGGYAEFAKFINVWCSSISRRLGEFAPRNFTNSSI FT FVDLSNLGHSLCDLVLAQQVHDRDAYTRLALHIHRIYGEDGGLDFWRLANFPSKSWPFN FT GERCLEGSVVQKELQR" FT gene 142..3308 FT /gene="P2-3" FT CDS join(142..1480,1480..3308) FT /codon_start=1 FT /ribosomal_slippage FT /gene="P2-3" FT /product="replicase fusion protein" FT /db_xref="GOA:R4I753" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:R4I753" FT /protein_id="AFK28046.1" FT /translation="MAPTYFAFFLLVCLCSSVSSYQGTMFTPLEPANASYWLDSTDIAV FT PPSHPQVQLIYDCPPQKMLRDFSSHDITLELWERGYNETRQAFSEAMQNLQNLLMSGVR FT QFRAGLESLLHVILQTAAYLWTSLIWATACATWYLLSRYTIEMLTLASLYISTVYMVKM FT AAWIFGDLPISLLKAGLSMVRGVSRALWYRKSYNAEKSVEGYLSFKIPQNPPKNSVLQV FT QYKDGSHAGYATCVTLYNGTNGLLTAYHVAVPGSKVVSTRNGSKIPLSEFRSIMESEKR FT DLVLLAGPPNWEGTLACKAVQFQSAQNLCKSKASFYAYDGEGWISSNAEIVGIAEGKTH FT ASVLSNTDAGHSGTPYFNGRTVLGVHVGGAKDENFNYMAPIPPVYGLTSPAYEFETTAP FT QGRLFTQEEIEELIEEFSFSEITSIMGHRRFHQMHDSRRHQAEYEYEFGKRAGGRVRRN FT NRTRCHPSGWAQKWRRTVSCCSLLPEGQHVHTSEQTGEPHCYCSIPHHQCFYRHFVGNQ FT TGNNGQNRCPFDREASGPSLGRQSHEETEVAQTRQEKFEELATDFSSFFDAQYTWEQGG FT EEAPGFDKVGFLPQFYHAKQKKSSNWGDKICKQHPEMGDLTKGFGWPQFGAKAELKSLR FT LQAARWLERAQSVKIPSSEEREHVIERCCRAYQAARTNGPMAMRGDRLSWDNFLQDFKQ FT AVLSLEMDAGIGVPYIAYGKPTHRGWVEDKKLLPILARLTFNRLQKMLEVRYVDLSPAE FT LVREGLCDPIRVFVKGEPHKQSKLDEGRYRLIMSVSLVDQLVARVLFQNQNKREIALWR FT VVPSKPGFGLSTDEQVAEFMQILSAQVGLTLSDLITEWRAHMIATDCSGFDWSVSDWLL FT EDDMEVRNRLTLDLNETTRRLRAAWLHCISNSVLCLSDGTLLAQRVPGVQKSGSYNTSS FT SNSRIRVMAAYHCGAEWAMAMGDDALESACSNLERYKSLGFKVEESSKLEFCSHIFERE FT DLAIPVNKAKMLFKLIHGYEPECGNVEVLINYLAACFSILNELRSDPSLVETLHQWLVA FT PVQPQKI" FT gene 142..2034 FT /gene="P2" FT CDS 142..2034 FT /codon_start=1 FT /gene="P2" FT /product="hypothetical protein P2" FT /db_xref="GOA:R4I806" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:R4I806" FT /protein_id="AFK28045.1" FT /translation="MAPTYFAFFLLVCLCSSVSSYQGTMFTPLEPANASYWLDSTDIAV FT PPSHPQVQLIYDCPPQKMLRDFSSHDITLELWERGYNETRQAFSEAMQNLQNLLMSGVR FT QFRAGLESLLHVILQTAAYLWTSLIWATACATWYLLSRYTIEMLTLASLYISTVYMVKM FT AAWIFGDLPISLLKAGLSMVRGVSRALWYRKSYNAEKSVEGYLSFKIPQNPPKNSVLQV FT QYKDGSHAGYATCVTLYNGTNGLLTAYHVAVPGSKVVSTRNGSKIPLSEFRSIMESEKR FT DLVLLAGPPNWEGTLACKAVQFQSAQNLCKSKASFYAYDGEGWISSNAEIVGIAEGKTH FT ASVLSNTDAGHSGTPYFNGRTVLGVHVGGAKDENFNYMAPIPPVYGLTSPAYEFETTAP FT QGRLFTQEEIEELIEEFSFSEITSIMGHRRFHQMHDSRRHQAEYEYESGNGQAAASAET FT TAPDATPAVGHKSGDAQSPAAPSSPKVNTYTPPNKRENRTATAVSPTTSASTDTLSEIK FT QAIMDKIDVHSIEKQVVQALADKAMKKPKSRRRGKRSSKNSQPTSQVSSMPSTPGNKAG FT KKPQDSTRSDSSPSFTTLNKRKARIGETKSANSTQKWVISQRASGGPSLAQKPN" FT gene 3508..4107 FT /gene="CP" FT CDS 3508..4107 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:R4I7L3" FT /db_xref="InterPro:IPR001517" FT /db_xref="UniProtKB/TrEMBL:R4I7L3" FT /protein_id="AFK28047.1" FT /translation="MNTVAARNQNAGRRRRRNQRPTRRDRVVVVNPXGGPPRGRRQRRN FT RRRPNRGGRARRGSPGETFVFSKDNLTGSSTGSITFGPSLSESPAFSSGILKAYHEYKI FT IMVQLEFISEASSTSSGSISYELDPHCKLSSLQSTINKFGITKNGLRRWTAKQINGMEW FT HDATEDQFKILYKGNGSSSVAGSFRITIKCQVQNPK" FT gene 3536..4111 FT /gene="MP" FT CDS 3536..4111 FT /codon_start=1 FT /gene="MP" FT /product="movement protein" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:R4I7I6" FT /protein_id="AFK28048.1" FT /translation="MQGGEGEEISALHGATAWLWSTPXGDHRAEDDNEETADALIEEAE FT LEEEARAKHLYFQRTISRAVPQEVSPSGRLYQRAQHSALEYSRPTMNIRSSWSSWSSSP FT RPLPPPRVPSLMSWTPTASLAPSNPRLISLESPRMDCDVGPLSRSTGWNGTMQPKTNSR FT SSTKGMDLPRLRAASESPSSARSKTRNR" FT gene <4108..5511 FT /gene="P6" FT CDS <4108..5511 FT /codon_start=1 FT /gene="P6" FT /product="hypothetical protein" FT /note="read-through protein" FT /db_xref="GOA:R4I782" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:R4I782" FT /protein_id="AFK28049.1" FT /translation="VDGSSPPPPGPSPTPPPPPPPQPQPQPCAQRFWGYEGNPQNKILT FT AENSRNIDSRPLNFVQMYKWEDEKWDKVNLQAGYSRNDRRCMETYLTIPADKGKFHVYL FT EADGEFVVKHIGGELDGSWLGNIAYDVSQRGWNIGNYKGCKIKNYQSNTVFVAGHPDAT FT MNGKSFDTARAVEVDWFASFELECDDEEGSWAIYPPPIQKDSSYKYTVSYGNYTEKYCE FT WGAISVSIDEDNNGNVPRRIPRKGAMAWSTPEPSFSGNDSQRQDFNTPSPKERGSDTLE FT SEEKKEEDNLLDLEEENIPDVDDDDLWKGISRASAAGTTEDDRASTSSRLRGNLKPKGL FT PKPQPTRTITEFNPEPDLIEAWRPDLAPGYSKADVAAATVIAGGSIHEGRDMLERREAK FT VMDSRKKWGILSSTSSLTSGALKKLSAQSEKLAMLSTGERVQYQRLKNSMGSTVAAEYL FT EKVLADKTS" XX SQ Sequence 5672 BP; 1567 A; 1442 C; 1393 G; 1269 T; 1 other; acaaaagata cgagcgggtg atgcaaattg agtctgtcaa gcaacaatta atcttcagac 60 ctacccgacg cacgagcaca aacgatcgca agttaaacgt agctaacttt ctgattaatc 120 actctttctt tttagcgatc aatggcacca acctacttcg cctttttctt gctcgtctgc 180 ctctgctcat cagtgagcag ttatcagggg actatgttta cacccctgga gccagcaaac 240 gcatcatact ggctcgattc caccgacatt gcggtgcccc cctcccatcc tcaagtgcag 300 ttgatctacg actgcccgcc tcaaaagatg ttgcgcgatt tttcctcgca cgacattact 360 ctagagctct gggagagagg atacaacgaa accagacaag ccttttcgga ggctatgcag 420 aatttgcaaa atttattaat gtctggtgtt cgtcaatttc gcgcaggctt ggagagtttg 480 ctccacgtaa ttttacaaac agcagcatat ttgtggacct ctctaatttg ggccacagcc 540 tgtgcgactt ggtacttgct cagcaggtac acgatcgaga tgcttacact cgcctcgctt 600 tacatatcca ccgtatatat ggtgaagatg gcggcttgga tttttggcga cttgccaatt 660 tcccttctaa aagctggcct ttcaatggtg agaggtgtct cgagggctct gtggtacaga 720 aagagctaca acgctgagaa atccgtagag ggttatctct cattcaagat accacagaat 780 ccccctaaaa actcagtttt gcaggtccaa tataaagacg gatcgcatgc cgggtatgct 840 acctgtgtga cgctgtacaa tggaacaaat gggcttctca cagcctatca cgtcgctgtc 900 ccaggtagca aagtcgtctc caccaggaac ggaagtaaga ttcccctctc tgagttcaga 960 tccattatgg agtctgaaaa gagggatctc gtgctattgg cgggtcctcc aaactgggag 1020 ggtaccctag cctgcaaggc cgttcagttc caatctgccc agaacctttg caaatcaaag 1080 gcctccttct acgcttacga cggagaggga tggatctcat ccaatgctga aattgttggc 1140 attgcagagg gcaaaaccca tgcatccgtg ttaagcaata cggatgctgg tcacagtggc 1200 accccgtatt ttaacggaag aacagttttg ggtgtccacg ttggcggagc taaagacgaa 1260 aattttaatt acatggcccc gataccgccc gtttatggtc tcactagccc tgcttatgaa 1320 ttcgagacca cggcacccca aggacgcttg ttcacacaag aagaaataga agaactcatt 1380 gaagaatttt ccttcagtga gatcacgtcc ataatggggc atcgccgatt ccaccaaatg 1440 cacgactcac ggcgacatca agctgaatac gaatatgagt cgggaaacgg gcaggcggcc 1500 gcgtccgccg aaacaaccgc acccgatgcc accccagcgg ttgggcacaa aagtggagac 1560 gcacagtctc ctgctgctcc ctcctccccg aaggtcaaca cgtacacacc tccgaacaaa 1620 cgggagaacc gcactgctac tgcagtatcc cccaccacca gtgcttctac cgacactttg 1680 tcggaaatca aacaggcaat aatggacaaa atcgatgtcc attcgataga gaagcaagtg 1740 gtccaagcct tggcagacaa agccatgaag aaaccgaagt cgcgcagacg cggcaagaga 1800 agttcgaaga actcgcaacc gacttctcaa gtttcttcga tgcccagtac acctgggaac 1860 aaggcgggga agaagcccca ggattcgaca aggtcggatt cctcccccag ttttaccacg 1920 ctaaacaaaa gaaaagctcg aattggggag acaaaatctg caaacagcac ccagaaatgg 1980 gtgatctcac aaagggcttc gggtggcccc agtttggcgc aaaagccgaa ctaaaatcgc 2040 tgcggctaca agctgcgcgt tggctggaac gtgcccagtc agttaaaatc ccctcatctg 2100 aggagcggga gcacgttata gagagatgct gtcgggcata ccaagctgcc agaactaatg 2160 gcccgatggc gatgagagga gatcgacttt cctgggataa cttcctacag gatttcaaac 2220 aggcggtcct ctcgttggaa atggacgcag gcatcggagt tccgtacata gcttacggca 2280 aaccaaccca ccgcgggtgg gttgaagata agaaactcct tccgatattg gctcgtctca 2340 ccttcaaccg gctacagaag atgttggagg taagatatgt tgacttatcg cctgctgagc 2400 ttgtgcgaga gggtctctgt gaccctattc gagtgttcgt taaaggtgaa ccgcacaagc 2460 aatcaaaatt ggatgaagga cgctaccgcc tcatcatgag cgtctctcta gttgaccaat 2520 tggtagcccg ggttttattc caaaatcaaa ataagcgcga aatagcgttg tggagagtgg 2580 ttccctccaa acccggtttt ggcttatcca cggatgagca agttgcggag ttcatgcaga 2640 tcctctccgc ccaagttggg ctaacgcttt cggatttgat taccgagtgg cgagcccaca 2700 tgatagcaac tgactgctct ggctttgact ggagcgtttc ggactggctc cttgaagacg 2760 atatggaggt ccgaaaccgc ctgacgctcg atttaaacga gaccacgcgc cgtttacgcg 2820 cagcgtggtt acattgcata tcgaacagcg tcctctgcct ttcagacgga acattattag 2880 cgcagagagt cccaggcgtg cagaagagtg gcagctacaa tacgtcatcg agcaattccc 2940 gtattcgggt gatggctgcc taccactgcg gcgcagaatg ggctatggcg atgggcgatg 3000 acgcccttga gtcagcttgc tcgaacctcg agcgttacaa atcgctcggt ttcaaagtcg 3060 aggagtcctc aaaactggaa ttctgttctc atatttttga gagagaggac ctcgccattc 3120 cggttaacaa ggccaaaatg ctctttaagc tcatacatgg ctatgaaccg gaatgcggca 3180 atgtggaagt tttgatcaat tatttggccg cctgcttttc tattcttaat gaactgcggt 3240 ctgatccttc ccttgtcgaa actctccatc agtggctggt cgctccagta cagccacaaa 3300 agatataagg ggagtataaa gaacactagc caagcacaca cgagttgcaa gcattggaag 3360 tctgagtctc gttactaaga gtccacacaa tagattataa gtttctcgca ggattttcaa 3420 gcggtctatt gtctgcaata cccatcacgg taatcggact ctattttgtc tacctaaaga 3480 tttcagcaca cgtacgctca attgttaatg aatacggtcg cggctagaaa tcaaaatgca 3540 gggaggcgaa ggcgaagaaa tcagcgccct acacggcgcg accgcgtggt tgtggtcaac 3600 cccatngggg gaccaccgcg cggaagacga caacgaagaa accgccgacg ccctaatcga 3660 ggaggcagag ctagaagagg aagcccgggc gaaacatttg tattttcaaa ggacaatctc 3720 acgggcagtt ccacaggaag tatcaccttc gggccgtctc tatcagagag cccagcattc 3780 agctctggaa tactcaaggc ctaccatgaa tataagatca tcatggtcca gttggagttc 3840 atctccgagg cctcttccac ctcctcgggt tccatctctt atgagttgga cccccactgc 3900 aagcttagct ccctccaatc cacgattaat aagtttggaa tcaccaagaa tggattgcga 3960 cgttggaccg ctaagcagat caacgggatg gaatggcacg atgcaaccga agaccaattc 4020 aagatcctct acaaagggaa tggatcttcc tcggttgcgg gcagcttcag aatcaccatc 4080 aagtgccagg tccaaaaccc gaaataggta gacggcagtt cccccccccc cccaggtcct 4140 agcccaaccc caccacctcc accaccccct cagcctcaac cccaaccttg cgctcagcgc 4200 ttttggggtt atgaaggcaa cccacaaaac aaaatactta cagccgaaaa ttcaaggaat 4260 attgattccc ggccgttaaa ctttgtacaa atgtacaagt gggaagacga gaagtgggac 4320 aaggtcaact tgcaagccgg atattctcgc aatgaccgac gttgtatgga gacgtacctc 4380 acaattccag cagacaaagg aaaatttcac gtttatcttg aagctgatgg tgagttcgtc 4440 gtcaagcaca tcggtggcga gctcgacggt agttggcttg gaaacatcgc atacgatgtt 4500 tcccaaagag gttggaacat agggaattac aaaggttgta aaatcaaaaa ttatcaatcc 4560 aacacagtct ttgtggcagg acatcccgat gcaacaatga atggcaaaag ttttgacact 4620 gcgcgggctg ttgaagtcga ttggttcgct tccttcgaat tggaatgtga tgacgaagaa 4680 ggaagctggg ctatataccc tccccccata caaaaggatt cttcgtataa atacaccgtc 4740 tcatacggga attacacgga gaaatattgc gagtggggag cgatttcagt atcaatcgac 4800 gaggataata acgggaacgt gccaagaaga ataccacgca agggggctat ggcgtggtcc 4860 acccctgaac cctctttttc agggaatgat agtcaaagac aagactttaa cactccttcg 4920 cccaaagagc gaggttccga tactctggaa tcggaggaaa agaaggaaga ggacaacctt 4980 cttgatcttg aggaagaaaa tatacccgac gttgatgatg acgatttatg gaagggtatt 5040 tcccgtgcct cggcagccgg gaccactgag gatgatcgag cgtcaacaag ctctcgtctt 5100 cgtggaaacc tcaagccaaa gggcctccca aaaccacagc ctactcgaac catcactgag 5160 ttcaatcctg aacctgattt gatagaggcg tggaggcctg atctagcacc tggatattcc 5220 aaagcggacg tcgccgcagc gacagtgatc gcaggaggga gtatccacga gggaagagat 5280 atgctcgagc gtagagaagc aaaagtaatg gatagtagga agaaatgggg aatcctttcc 5340 tcaacttcct ctcttactag cggagcattg aagaagctca gcgcacagtc ggaaaagctt 5400 gccatgttat caactggcga gcgagtgcaa tatcaacgat tgaagaattc aatgggttca 5460 actgtcgcgg ctgagtacct cgaaaaggtg ttagctgata aaacctcctg aagagttcct 5520 actactctga agtagcgcgg caccggaata cgcggcgaag ctcaatccgg aaactcaaga 5580 acgagagtat aaacgttaac gactccgaaa ggataggcaa cgaacgttcc cactcagtgg 5640 aaacagaggg attccccctg gcgtttcggt gt 5672 //