ID JF925155; SV 1; linear; genomic RNA; STD; VRL; 5878 BP. XX AC JF925155; XX DT 26-MAR-2013 (Rel. 116, Created) DT 26-MAR-2013 (Rel. 116, Last updated, Version 1) XX DE Sugarcane yellow leaf virus isolate IND4, complete genome. XX KW . XX OS Sugarcane yellow leaf virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5878 RX AGRICOLA; IND500619386. RA Chinnaraja C., Viswanathan R., Karuppaiah R., Bagyalakshmi K., Malathi P., RA Parameswari B.; RT "Complete genome characterization of Sugarcane yellow leaf virus from RT India: Evidence for RNA recombination"; RL Eur. J. Plant Pathol. 135(2):335-349(2013). XX RN [2] RP 1-5878 RA Viswanathan R., Chinnaraja C., Karuppaiah R., Bagyalakshmi K.; RT ; RL Submitted (03-APR-2011) to the INSDC. RL Pathology, Sugarcane Breeding Institute, Veerakeralam, Coimbatore, RL Tamilnadu 641007, India XX DR MD5; 2d1ddda17210b8b23a0a2b65b5265344. DR EuropePMC; PMC4422679; 25946037. XX FH Key Location/Qualifiers FH FT source 1..5878 FT /organism="Sugarcane yellow leaf virus" FT /host="Saccharum hybrid cultivar CoC 85061" FT /isolate="IND4" FT /mol_type="genomic RNA" FT /country="India:Coimbatore" FT /collected_by="C. Chinnaraja" FT /collection_date="26-May-2010" FT /identified_by="R. Viswanathan" FT /db_xref="taxon:94290" FT 5'UTR 1..66 FT CDS 67..837 FT /codon_start=1 FT /product="RNA silencing suppresser protein" FT /note="ORF0" FT /db_xref="InterPro:IPR021411" FT /db_xref="UniProtKB/TrEMBL:M4GJX7" FT /protein_id="AEG20970.1" FT /translation="MLFNEFSVQGIKFRAHASTSPVLREDVSRCLTYYRVFAYRWIQLT FT YSDEHTRHLVHNFYGPNTPVYYGLDHIRAVVATMVPILLLPDTTLGQHLHIKRQYLKSV FT LLWLARNKLYYRVTRCFSRRFILEQEPISAELFRTQLLKYVGMDIFQDVARLQNILERG FT YDPFRSVLGVLLRERERFVDRVLEQPPLDPSQTLRLCFHYHDTLDHDDSDSDMETARHN FT RFFGLPIIRDLPDDEKALFIHSNLVGASTFASDV" FT CDS join(266..1738,1738..3453) FT /codon_start=1 FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase" FT /note="ORF2" FT /db_xref="GOA:M4GJY4" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:M4GJY4" FT /protein_id="AEG20972.1" FT /translation="MGWIIFALLLLQWCQYSSCQTQPWDSTSISRDSISSLSFYGWPET FT NSTIELHGASPGGSFSNKSPSQPNFSELNYSSMLGWIFFKMWLDCKTFSREAMILSDRF FT LGYSFENAKGLSIEFLNNLLWILVRLYVYAFTIMIRWIMTIVILTWRPLVTIAFLVFLS FT SATYQMMKKLYSFIQIWWVLAPLLVMFRLAMYLRRRLFPNRGDEKMVAGFKSFAVPMTP FT PGHAVLEIVHPDDSHMGYASCVRLKNGEEALLTSVHCINETFKVRSLRNGVKIPLTEFQ FT VLLPAKNIDLVLLRGPPEWKSILGAKAAHFTPANQLNKGAVSIFVHDGEWKMHNAKVTG FT TDGFYATVLSNTEKGFSGAPYWNGKSIVGVHKGYVYGDDSKNYNLMAPIPPVVGLTAPA FT FVYESPSLQGDVFSDADVSDMADYAEEVYEKALAEPKVWKPASGKYWWEMAEEEDDFVV FT EAKPPPPESPVEKVPGEKQTPACTVEKASTPVEADSGPGKRAKWRRPLKNTGIHPAQAR FT RIYKRVAQQHRLAVDPKDRPELHCNEGGGETAAKSTEQTAAERREEVAAKTQDLEHFFQ FT AAYKWEESTSDIPGSGSAANSQRYTIPQNRKAHNGGSASSQNTQRWTSKVAGFGWPLFG FT AQAEETSLRLQAARWLKRAELAEKPTATQRRLVLIVWLRHMNRVKPMPHTPAPLVASCG FT TISSRILKRLSTTLELDAGIGLPYKLLNKDVHRQMVEDPKFLPLLTRLTWNRLQKMSQV FT DFREMTPEQLVREGLCDPTRFLVKEEPHKQAKLDEGRYRLIMSVSLVDQLVARVLFQAQ FT NKREIALWRAIPSKPGFGLSTDREAREFIESLSKTVGCSPAEVIRGWRDKIVPTDCSGF FT DWSVADWMLEDDMEVRNLLTINNNELTRRLRACWLKCITNSVICTSGGVLYAQTHPGVQ FT KSGSYNTSSSNSRVRVMAAFHCGADWAIAMGDDALESPNSNINAYQKLGFKVEVASQLE FT FCSHVFEQEDLARPLNVNKMLYRLIFGYNPACGNAEVLCNYLQAVASVLNELRHDPQLV FT ATLHQWLVPGATTK" FT CDS 266..2194 FT /codon_start=1 FT /product="multifunctional protein" FT /note="ORF1" FT /db_xref="GOA:M4GJY9" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:M4GJY9" FT /protein_id="AEG20971.1" FT /translation="MGWIIFALLLLQWCQYSSCQTQPWDSTSISRDSISSLSFYGWPET FT NSTIELHGASPGGSFSNKSPSQPNFSELNYSSMLGWIFFKMWLDCKTFSREAMILSDRF FT LGYSFENAKGLSIEFLNNLLWILVRLYVYAFTIMIRWIMTIVILTWRPLVTIAFLVFLS FT SATYQMMKKLYSFIQIWWVLAPLLVMFRLAMYLRRRLFPNRGDEKMVAGFKSFAVPMTP FT PGHAVLEIVHPDDSHMGYASCVRLKNGEEALLTSVHCINETFKVRSLRNGVKIPLTEFQ FT VLLPAKNIDLVLLRGPPEWKSILGAKAAHFTPANQLNKGAVSIFVHDGEWKMHNAKVTG FT TDGFYATVLSNTEKGFSGAPYWNGKSIVGVHKGYVYGDDSKNYNLMAPIPPVVGLTAPA FT FVYESPSLQGDVFSDADVSDMADYAEEVYEKALAEPKVWKPASGKYWWEMAEEEDDFVV FT EAKPPPPESPVEKVPGEKQTPACTVEKASTPVEQTPVQGNEPSGADHLKTPESTPLKPD FT ESTKELLNNIVSQLIQKIDLSSIATRVEEKLLQKAQNKQQQNGGKKSPRKRKTSNTSSK FT PPTNGKSPPVISPVQEVRQTPSAIPSPKTEKHTMGGAHHLRTPRDGRPKSPDSGGLSSA FT PKPKRQV" FT CDS 3648..5675 FT /codon_start=1 FT /transl_except=(pos:4236..4238,aa:OTHER) FT /product="putative aphid transmission factor" FT /note="ORF5; translational readthrough" FT /db_xref="GOA:M4GJX8" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:M4GJX8" FT /protein_id="AEG20975.1" FT /translation="MDTGANRSQRNVRRRANRRRQTRPVVVVRPAAGPRRVRRRRARVG FT GNAVRGPGGRSNRDVLTFTIDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL FT TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKTFPAPFIRGKDFMTT FT SADQFWLLYKGNGDGSLAGQFVCRFECLFQNPKXVGDAPPTPTPQPTPPAPAPAPAPKY FT FGYQGVPNNIIKTRGNSEYLDVGQLDSVTMYLWKDESWSIEQLPAGYRVNTQDRAIPYL FT LIPVEKGKYSVFIQCEGFKAVKAKGGTNNGKMSGFICDNINLQGWRAYAYSGCSISNYK FT TADSNVPGHPDMRVNNCSFTDQLVERDFSCSFHLEVPQKGYFGLEAPPIEKSDHFNFVV FT SYANFTEKTMEWGSVSIAIDEVSDGAYSGSKWDKTTAMSARLRDLVSAPSEVYTPVALV FT SSADEGTESTPPAPNPALGPDNPATKEPAPKIVDSPDPKVLNWLNNQKDEPVVNEVLRE FT SPIYAPPPPPSLGHTHVDTQRQADKVRRSLMANASRSASPPPTATEVPVSGSADTVSQG FT STLRGGSLRGNLNSRPSLPRVADSPPRSVSPARSETSTLQAGSLSGGSLRGGSLQVLPE FT ATREQRRQYESLKNSQGKTVAKNYAKEQGFKPPKSASFFG" FT CDS 3648..4238 FT /codon_start=1 FT /product="coat protein" FT /note="ORF3" FT /db_xref="GOA:M4GJZ4" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:M4GJZ4" FT /protein_id="AEG20973.1" FT /translation="MDTGANRSQRNVRRRANRRRQTRPVVVVRPAAGPRRVRRRRARVG FT GNAVRGPGGRSNRDVLTFTIDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL FT TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKTFPAPFIRGKDFMTT FT SADQFWLLYKGNGDGSLAGQFVCRFECLFQNPK" FT CDS 3679..4131 FT /codon_start=1 FT /product="movement protein" FT /note="ORF4" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:M4GJX2" FT /protein_id="AEG20974.1" FT /translation="MSEDALTVVDRLGQWSWSGLPQDLDEYDDVEHVLEETLCEDREEE FT ATGMFSLSRLTISRPTQPGSSNSDRTYLSTQRSTMAYSKPTMSIKSQVSQFSITPAPPT FT QLQVQSHLKWIHPAPKQQQAPRLLASPSRGTPRKPSRPPSSGGKTS" FT 3'UTR 5676..5878 XX SQ Sequence 5878 BP; 1566 A; 1543 C; 1442 G; 1327 T; 0 other; acaaaatata tcgggaggga aacccctgat atattcagaa ctcagcctct ggttgtaaac 60 tgctctatgc tcttcaacga attcagcgtt caaggcatca agtttagagc acacgcaagc 120 acttcgccag ttttgcgtga ggacgtgagc aggtgtttga cctattacag ggtcttcgct 180 tacaggtgga tacaactcac atattcagac gagcacaccc gccacctggt ccataacttc 240 tatggcccca acacgcctgt ttactatggg ttggatcata ttcgcgctgt tgttgctaca 300 atggtgccaa tactcctcct gccagacaca accctgggac agcacctcca tatcaagaga 360 cagtatctca agtctgtcct tttatggttg gcccgaaaca aactctacta tagagttaca 420 cggtgcttct cccggcggtt cattctcgaa caagagccca tctcagccga acttttccga 480 actcaactac tcaagtatgt tgggatggat atttttcaag atgtggctag attgcaaaac 540 attctcgaga gaggctatga tcctttccga tcggttcttg gggtactcct tcgagaacgc 600 gaaaggtttg tcgatcgagt tcttgaacaa cctcctctgg atcctagtca gactctacgt 660 ttatgctttc actatcatga tacgttggat catgacgata gtgattctga catggagacc 720 gctcgtcaca atcgcttttt tggtcttcct atcatccgcg acctaccaga tgatgaaaaa 780 gctttattca ttcattcaaa tctggtgggt gctagcacct ttgctagtga tgtttaggtt 840 ggccatgtat ttaaggcgga ggttgttccc gaatcgtggg gacgagaaaa tggttgcagg 900 tttcaaaagc tttgcagtcc ccatgacccc accgggacac gctgtacttg aaatagtaca 960 cccagacgac tcccacatgg gatatgcatc ctgtgtacga ttgaaaaacg gggaagaggc 1020 tctcttgaca tctgttcact gcattaacga aacctttaag gttcgttccc tcaggaatgg 1080 agtcaaaata cctctaacgg aatttcaggt acttttaccc gccaagaata tcgacttagt 1140 tcttcttcga ggcccacctg agtggaagtc tattcttgga gccaaagcag cccatttcac 1200 tccagcaaac cagctcaaca aaggagctgt gtccatcttc gttcacgatg gtgagtggaa 1260 aatgcacaat gcaaaggtta cgggcactga tggtttttac gccacggtgt tgagtaacac 1320 agagaagggc ttcagtggcg ccccctactg gaacggcaaa agcatagtag gggttcacaa 1380 agggtacgtg tatggggatg attcaaagaa ctacaatctc atggcgccaa tcccccctgt 1440 tgtggggttg acggcgccag catttgttta tgaatccccc tctctgcaag gagatgtctt 1500 tagcgatgcc gacgtttcag acatggctga ttacgctgaa gaagtgtatg aaaaagccct 1560 tgcagagccc aaagtgtgga aacccgccag cggcaaatac tggtgggaaa tggccgaaga 1620 agaggatgat ttcgtggttg aagcgaaacc tcctccccct gaatcccccg ttgagaaagt 1680 tccaggagag aagcagactc cagcttgtac tgttgagaaa gcttcgactc ctgtcgagca 1740 gactccggtc cagggaaacg agccaagtgg cgccgaccac ttaaaaacac cggaatccac 1800 cccgctcaag ccagacgaat ctacaaaaga gttgctcaac aacatcgtct cgcagttgat 1860 ccaaaagatc gacctgagct ccattgcaac gagggtggag gagaaactgc tgcaaaaagc 1920 acagaacaaa cagcagcaga acggagggaa gaagtcgccg cgaaaacgca agacctcgaa 1980 cacttcttcc aagccgccta caaatgggaa gagtccacca gtgatatccc cggttcagga 2040 agtgcggcaa actcccagcg ctataccatc ccccaaaacc gaaaagcaca caatgggggg 2100 agcgcatcat ctcagaacac ccagagatgg acgtccaaag tcgccggatt cgggtggcct 2160 ctcttcggcg cccaagccga agagacaagt ctgagactcc aagcggcccg ctggctcaaa 2220 cgagccgagc tagcggaaaa gccgactgca acacaacgca ggctcgtctt gatcgtgtgg 2280 ttaaggcata tgaaccgtgt aaaaccaatg ccccacacac cagctcctct ggtagcctcc 2340 tgtggaacga tttcctcaag gattttaaag aggctatcaa ctacactaga actcgacgct 2400 ggaataggtc tcccatacaa actcctcaac aaggatgtcc atcgtcaaat ggttgaagac 2460 cccaaattcc tgccgctcct gacgcgattg acctggaacc gtttacagaa gatgtcccag 2520 gttgatttcc gggagatgac tcctgaacaa ctagtgagag aaggattgtg cgacccgact 2580 cgtttcctcg tcaaagagga accgcacaag caggccaagc ttgatgaagg gcgctaccgc 2640 ctcatcatgt cagtctcgct ggtagatcaa ctggtagccc gggttttgtt ccaagcgcaa 2700 aacaagagag agatagcttt gtggagagct atcccgtcaa agcccggttt tggcttatcc 2760 acagacaggg aagcacgcga attcatagaa tccctgtcca agacagtagg gtgttcccca 2820 gctgaagtca ttcgtggctg gcgggacaag atcgtaccca ccgactgttc cggcttcgac 2880 tggtcagtcg ccgactggat gctcgaggac gatatggaag tgagaaacct tctcactatc 2940 aacaacaacg agctcacccg gcgccttcgg gcgtgctggc tgaagtgcat cactaactca 3000 gtgatttgca cgtccggcgg tgtcttgtac gcccaaactc accctggtgt gcagaaatct 3060 ggatcttaca acacgagttc atccaattcc agggttcgag tgatggccgc ttttcattgc 3120 ggtgctgatt gggcgatagc catgggggat gacgcacttg aatccccaaa ctccaacatc 3180 aacgcgtatc aaaagttggg gttcaaagtc gaggttgctt cacagctaga attttgctca 3240 cacgtctttg agcaggaaga cctcgccagg ccgttgaacg taaacaagat gctttatcgt 3300 ttgatatttg gatataatcc ggcctgtggc aacgcggagg tattgtgcaa ttacctccaa 3360 gctgtggctt cagttctcaa cgagttacgc cacgatccgc agctagttgc caccctccac 3420 cagtggttgg ttcctggcgc caccacaaaa taaatacgga gggtcatccc gagccaccat 3480 ttaggttgcg agagtggaac gggcagtcct aacaagccgc gagattctgg attacaagct 3540 gctagctggg gtccttaatt ggtattctca ttggggtccc cccagtgatt ttagcggctt 3600 acctgaatat tcctcaaaat caggtgccca tttccgagcg atttttgatg gatacgggcg 3660 ctaaccgctc acaaaggaat gtcagaagac gcgctaaccg tcgtcgacag actcggccag 3720 tggtcgtggt ccggcctgcc gcaggaccta gacgagtacg acgacgtaga gcacgtgttg 3780 gaggaaacgc tgtgcgagga ccgggaggaa gaagcaacag ggatgttctc actttcacga 3840 ttgacgatct caaggccaac tcaaccggga tcctcaaatt cggaccgaac ttatctcagt 3900 acgcagcgtt caacaatggc ttactcaaag cctaccatga gtataaaatc acaagtctca 3960 caattcagta taactcctgc tcctccgacg caactccagg tgcaatcgca cttgaagtgg 4020 atacatcctg ctcccaaaca acaacaggct ccaagattac tagcttcccc gtcaagagga 4080 acgccaagaa aaccttcccg gcccccttca tcagggggaa agacttcatg actacatcag 4140 ctgatcagtt ttggcttttg tacaaaggga atggagacgg aagcctagca ggacaattcg 4200 tctgccgatt tgaatgttta ttccagaatc ccaaataggt aggcgacgct ccccccacac 4260 ccacaccaca accaacccca cccgctccgg ccccggcacc agcacccaaa tattttggat 4320 atcaaggtgt gccgaacaac atcatcaaaa ctcgaggcaa ctcagagtat ctcgatgtgg 4380 gccaactcga tagcgtgacc atgtacctct ggaaagatga atcatggagc atcgagcaac 4440 tgccagccgg atatcgagtt aacactcaag atcgtgccat accttatctc ctcattcctg 4500 tggagaaagg aaaatactcc gtgttcatac aatgtgaggg ctttaaggca gtgaaagcca 4560 aaggaggcac gaataacggc aaaatgagcg ggtttatctg tgataatata aatcttcagg 4620 gttggagagc gtatgcatat agtgggtgtt caatctctaa ttacaagaca gctgactcga 4680 acgtgcctgg tcatccagac atgagagtga acaactgttc ttttaccgac cagttggtcg 4740 agagagattt ttcttgttca tttcacctcg aggtgcctca gaaaggctat ttcggtctag 4800 aggccccacc cattgaaaag agtgatcatt tcaactttgt ggtgtcttac gctaatttca 4860 ctgagaaaac aatggaatgg ggatcagtct ccatagcgat agacgaggtg agtgacggag 4920 cgtatagtgg atcaaaatgg gataagacca ctgcaatgag tgctcgtttg cgagacctag 4980 tgagcgcccc atcggaagtt tacactccgg tggcactagt atcttcagca gacgaaggga 5040 cggagagtac gcctccagcc ccgaacccgg cactgggacc ggacaaccca gcaaccaaag 5100 agcccgcgcc caaaatcgtg gactcgccgg atccaaaggt tctcaattgg cttaacaacc 5160 aaaaagatga accggtggtt aatgaggttt tgcgagaatc tccgatttac gcgcctccac 5220 cacctccgtc tctaggtcac actcatgttg atacacagag acaggcggat aaggtccggc 5280 gctctctaat ggctaacgct tcacgttcag cctcacctcc tcctacagcc accgaggtgc 5340 ccgtgtctgg atccgccgat accgtctctc aaggcagtac tcttcgcggc gggtctctca 5400 gaggtaattt gaactctcgc ccctccttgc cgagggtcgc tgacagtcct ccccgatctg 5460 taagtccggc tcgttctgag accagtacat tacaggccgg ttctctgagt ggtggttcgt 5520 tgagaggtgg cagcctccag gttttacctg aggccacgag agagcagagg aggcaatacg 5580 aatctttgaa aaattcacaa gggaagacag tggcgaagaa ctatgccaaa gaacaaggtt 5640 tcaagccacc gaaatccgcc tccttctttg gttgagtgtt ggaacactat aaactccccc 5700 tcctcgggac acagggctcc gcacatgagc ttaaaccgcg ttcgatccac gaacagaaac 5760 tggagaactc cgcaaagttc taaaactatg cagatgggtt agcgacccag ctcctccatt 5820 gatgttaagc atctttggag gcccaagcta agagggatgg aatacaggga ggcactgc 5878 //