ID JF925154; SV 1; linear; genomic RNA; STD; VRL; 5870 BP. XX AC JF925154; XX DT 26-MAR-2013 (Rel. 116, Created) DT 26-MAR-2013 (Rel. 116, Last updated, Version 1) XX DE Sugarcane yellow leaf virus isolate IND3, complete genome. XX KW . XX OS Sugarcane yellow leaf virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5870 RX AGRICOLA; IND500619386. RA Chinnaraja C., Viswanathan R., Karuppaiah R., Bagyalakshmi K., Malathi P., RA Parameswari B.; RT "Complete genome characterization of Sugarcane yellow leaf virus from RT India: Evidence for RNA recombination"; RL Eur. J. Plant Pathol. 135(2):335-349(2013). XX RN [2] RP 1-5870 RA Viswanathan R., Chinnaraja C., Karuppaiah R., Bagyalakshmi K.; RT ; RL Submitted (03-APR-2011) to the INSDC. RL Pathology, Sugarcane Breeding Institute, Veerakeralam, Coimbatore, RL Tamilnadu 641007, India XX DR MD5; 10c4be0beb82b456cddc7165d90c69b7. DR EuropePMC; PMC4422679; 25946037. XX FH Key Location/Qualifiers FH FT source 1..5870 FT /organism="Sugarcane yellow leaf virus" FT /host="Saccharum hybrid cultivar CoV 92102" FT /isolate="IND3" FT /mol_type="genomic RNA" FT /country="India:Coimbatore" FT /collected_by="C. Chinnaraja" FT /collection_date="26-May-2010" FT /identified_by="R. Viswanathan" FT /db_xref="taxon:94290" FT 5'UTR 1..70 FT CDS 71..841 FT /codon_start=1 FT /product="RNA silencing suppresser protein" FT /note="ORF0" FT /db_xref="InterPro:IPR021411" FT /db_xref="UniProtKB/TrEMBL:M4GJX0" FT /protein_id="AEG20964.1" FT /translation="MLFNEFSVQGIKFRAHASTSPVLREDVSRCLTYYRVFACRWIELT FT YSDEHTRHLVHNFYGPNTPVYYGLDHIRAVVATMVPILLLPDTTLGQHLHIKRQFLKSV FT LLWLARNKLYHRVTRCFSRRFTLEQEPISAELFRTQLLKYVGMDIFQDVARLQNILERG FT YDPFRSVLGVLLRERERFVDRVLEQPPLDPSQTLRLCFHYHDTLDHDDSDSDMETARHN FT RLLGLPIIRDLPDDEKALFIHSNLVGASTFASDV" FT CDS join(270..1742,1742..3457) FT /codon_start=1 FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase" FT /note="ORF2" FT /db_xref="GOA:M4GJY8" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:M4GJY8" FT /protein_id="AEG20966.1" FT /translation="MGWIIFALLLLQWCRYSSCQTQPWDSTSISRDSFSSLSFFGWPET FT NSTIELHGASPGGSLSSKSPSQPNFSELNYSSMLGWIFFKMWLDCKTFSREAMILSDRF FT LGYSFENAKGLSIEFLNNLLWILVRLYVCAFTIMIRWIMTIVILTWRPLVTIAFLVFLS FT SATYQMMKKLYSFIQIWWVLAPLLVMFRLAMYLRRRLFSNRGDEKMVAGFKSFAVPMTP FT PGHAVLEIVHPDDSHMGYASWVRLKNGGKALLTSVHCINETFKVRSLRNGVKIPLTEFQ FT VLLPAKNIDLVLLRGPPEWKSILGAKAAHFTPANQLNKGAVSIFVHDGEWKMHNAKVTG FT TDGFYATVLSNTEKGFSGAPYWNGKSIVGVHKGYVYGDDSKNYNLMAPIPPVVGLTAPA FT FVYESPSLQGDVFSDADVSDMADYAEEVYEKALAEPKVWKPASGKYWWEMAEEEDDFVV FT EAKPPPPESPVEKVPGEKQTPACTVEKASTPVEADSGPGKRAKWRRPLKNTGIHPAQAR FT RIYKRVAQQHRLAVDPKDRPELHCNEGGGETAAKSTEQTAAERREEVAAKTQDLEHFFQ FT AAYKWEESTSDIPGSGSAANSQRYTIPQNRKAHNGESASSQNTQRWTSKVAGFGWPLFG FT AQAEETSLRLQAARWLKRAELAEKPTATQRRLVLIVWLRHMNRVKPMPHTPAPLVASCG FT TTSSRILMRLSTHKNSTHGIGLPYKLLNKDVHRQMVEDPKFLPLLTRLTWNRLQKMSQV FT DFREMTPEQLVREGLCDPIRLFVKGEPHKQAKLDEGRYRLIMSVSLVNQLVPRVLFQAQ FT NKREIALWRAIPSKPGFGLSTDREAREFIESLSKTVGCSPAEVIRGWRDKIVPTDCSGF FT DWSVADWMLEDDMEVRNLLTINNNELTRRLRACWLKCITNSVICTSGGVLYAQTHPGVQ FT KSGSYNTSSSNSRVRVMAAFHCGADWAIAMGDDALESPNSNINAYQKLGFKVEVASQLE FT FCSHVFEQEDLARPLNVNKMLYRLIFGYNPACGNAEVLCNYLQAVASVLNELRHDPQLV FT ATLHQWLVPGATTK" FT CDS 270..2198 FT /codon_start=1 FT /product="multifunctional protein" FT /note="ORF1" FT /db_xref="GOA:M4GJX6" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:M4GJX6" FT /protein_id="AEG20965.1" FT /translation="MGWIIFALLLLQWCRYSSCQTQPWDSTSISRDSFSSLSFFGWPET FT NSTIELHGASPGGSLSSKSPSQPNFSELNYSSMLGWIFFKMWLDCKTFSREAMILSDRF FT LGYSFENAKGLSIEFLNNLLWILVRLYVCAFTIMIRWIMTIVILTWRPLVTIAFLVFLS FT SATYQMMKKLYSFIQIWWVLAPLLVMFRLAMYLRRRLFSNRGDEKMVAGFKSFAVPMTP FT PGHAVLEIVHPDDSHMGYASWVRLKNGGKALLTSVHCINETFKVRSLRNGVKIPLTEFQ FT VLLPAKNIDLVLLRGPPEWKSILGAKAAHFTPANQLNKGAVSIFVHDGEWKMHNAKVTG FT TDGFYATVLSNTEKGFSGAPYWNGKSIVGVHKGYVYGDDSKNYNLMAPIPPVVGLTAPA FT FVYESPSLQGDVFSDADVSDMADYAEEVYEKALAEPKVWKPASGKYWWEMAEEEDDFVV FT EAKPPPPESPVEKVPGEKQTPACTVEKASTPVEQTPVQGNEPSGADHLKTPESTPLKPD FT ESTKELLNNIVSQLIQKIDLSSIATRVEEKLLQKAQNKQQQNGGKKSPRKRKTSNTSSK FT PPTNGKSPPVISPVQEVRQTPSAIPSPKTEKHTMGRAHHLRTPRDGRPKSPDSGGLSSA FT PKPKRQV" FT CDS 3649..5676 FT /codon_start=1 FT /transl_except=(pos:4237..4239,aa:OTHER) FT /product="putative aphid transmission factor" FT /note="ORF5; translational readthrough" FT /db_xref="GOA:M4GJX1" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:M4GJX1" FT /protein_id="AEG20969.1" FT /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRPAAGPRRVRRRRARVG FT GNAVRGPGGRSNRDVLTFTIDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL FT TTQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKTFPAPFIRGKDFMTT FT SADQFWLLYKGNGDGSLAGQFVCRFECLFQNPKXVGDAPPTPTPQPTPPAPAPAPAPKY FT FGYQGVPNNIVKTRGNSEYLDVGQLDSVTMYLWKDESWSIEQLPAGYRVNTQDRAIPYL FT LIPVEKGKYSVFIQCEGFKAVKAKGGTNNGKMSGFICDNINLQGWRAYAYSGCSISNYK FT TADSNVPGHPDMRVNNCSFTDQLVERDFSCSFHLEVPQKGYFGLEAPPIERSDHFNFVV FT SYANFTEKTMEWGSVSIAIDEVSDGAYSGSKWDKTTAMSARLRDLVSAPSEIYTPVALV FT SSADEGTESMPPAPNPALGPDNPATKEPAPKIVDSPDPKVLNWLNNQKDEPVVNEVLRE FT SPIYAPPPPPSLGHTHVDTQRQADKVRRSLMANASRSASPPPAATEVPVSGSADTVSQG FT STLRGGSLRGNLNSRPSLPRVADSPPRSVSPARSETSTLQVGSLSGGSLRGGSLQVLPE FT ATREQRRQYESLKNSQGKTVAKNYAKEQGFKPPKSASFFG" FT CDS 3649..4239 FT /codon_start=1 FT /product="coat protein" FT /note="ORF3" FT /db_xref="GOA:M4GJY3" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:M4GJY3" FT /protein_id="AEG20967.1" FT /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRPAAGPRRVRRRRARVG FT GNAVRGPGGRSNRDVLTFTIDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL FT TTQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKTFPAPFIRGKDFMTT FT SADQFWLLYKGNGDGSLAGQFVCRFECLFQNPK" FT CDS 3680..4132 FT /codon_start=1 FT /product="movement protein" FT /note="ORF4" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:M4GJZ3" FT /protein_id="AEG20968.1" FT /translation="MSEDALTVVDRLGQWSWSGLPQDLDEYDDVEHVLEETLCEDREEE FT ATGMFSLSRLTISRPTQPGSSNSDRTYLSTQRSTMAYSKPTMSIKSQVSQLSITHAPPT FT QLQVQSHLKWIHPAPKQQQAPRLLASPSRGTPRKPSRPPSSGGKTS" FT 3'UTR 5677..5870 XX SQ Sequence 5870 BP; 1560 A; 1542 C; 1447 G; 1321 T; 0 other; acaaaatata tcgggaggga aaacccctgg atatatttag gaactcagcc tctggctgta 60 aactggctct atgcttttca acgaattcag cgttcaaggc atcaagttta gagcacacgc 120 aagcacttcg ccagttttgc gtgaggacgt gagcaggtgt ttgacctact acagggtctt 180 cgcttgcagg tggatcgaac ttacttattc agacgagcac acccgccacc tggtccataa 240 tttctatggc cctaacacgc ccgtttacta tgggttggat catattcgcg ctgttgttgc 300 tacaatggtg ccgatactcc tcctgccaga cacaaccctg ggacagcacc tccatatcaa 360 gagacagttt ctcaagtctg tccttctttg gttggcccga aacaaactct accatagagt 420 tacacggtgc ttctcccggc ggttcactct cgagcaagag cccatctcag ccgaactttt 480 ccgaactcaa ctactcaagt atgttgggat ggatattttt caagatgtgg ctagactgca 540 aaacattctc gagagaggct atgatccttt ccgatcggtt cttggggtac tccttcgaga 600 acgcgaaagg tttgtcgatc gagttcttga acaacctcct ctggatccta gtcagactct 660 acgtttgtgc tttcactatc atgatacgtt ggatcatgac gatagtgatt ctgacatgga 720 gaccgctcgt cacaatcgcc ttcttggtct tcctatcatc cgcgacctac cagatgatga 780 aaaagcttta ttcattcatt caaatctggt gggtgctagc acctttgcta gtgatgttta 840 ggttggccat gtatttaagg cggaggttgt tctcgaatcg tggggacgag aaaatggttg 900 caggtttcaa aagctttgca gtccccatga ccccaccggg acacgctgta cttgaaatag 960 tacacccaga cgactcccac atgggatatg catcctgggt acgattgaaa aacgggggaa 1020 aggctctctt gacatctgtt cactgcatta acgaaacctt taaggttcgt tccctcagga 1080 atggagtcaa aatacctcta acggaatttc aggtactttt acccgccaag aatatcgact 1140 tagttcttct tcgaggccca cctgagtgga agtctattct tggagccaaa gcagcccatt 1200 tcactccagc aaaccagctc aacaaaggag ctgtgtccat cttcgttcac gatggtgagt 1260 ggaaaatgca caatgcaaag gttacgggca ctgatggttt ttacgccacg gtgttgagta 1320 acacagagaa gggcttcagt ggcgccccct actggaacgg caaaagcata gtaggggttc 1380 acaaagggta cgtgtatggg gatgattcaa agaactacaa tctcatggcg ccaatccccc 1440 ctgttgtggg gttgacggcg ccagcatttg tttatgaatc cccctctctg caaggagatg 1500 tctttagcga tgccgacgtt tcagacatgg ctgattacgc tgaagaagtg tatgaaaaag 1560 cccttgcaga gcccaaagtg tggaaacccg ccagcggcaa atactggtgg gaaatggccg 1620 aagaagagga tgatttcgtg gttgaagcga aacctcctcc ccctgaatcc cccgttgaga 1680 aagttccagg agagaagcag actccagctt gtactgttga gaaagcttcg actcctgtcg 1740 agcagactcc ggtccaggga aacgagccaa gtggcgccga ccacttaaaa acaccggaat 1800 ccaccccgct caagccagac gaatctacaa aagagttgct caacaacatc gtctcgcagt 1860 tgatccaaaa gatcgacctg agctccattg caacgagggt ggaggagaaa ctgctgcaaa 1920 aagcacagaa caaacagcag cagaacggag ggaagaagtc gccgcgaaaa cgcaagacct 1980 cgaacacttc ttccaagccg cctacaaatg ggaagagtcc accagtgata tccccggttc 2040 aggaagtgcg gcaaactccc agcgctatac catcccccaa aaccgaaaag cacacaatgg 2100 ggagagcgca tcatctcaga acacccagag atggacgtcc aaagtcgccg gattcgggtg 2160 gcctctcttc ggcgcccaag ccgaagagac aagtctgagg ctccaagcgg cccgctggct 2220 caaacgagcc gagctagcgg aaaagccgac tgcaacacaa cgcaggctcg tcttgatcgt 2280 gtggttaagg catatgaacc gtgtaaaacc aatgccccac acaccagctc ctctggtagc 2340 ctcctgtgga acgacttcct caaggatttt aatgaggcta tcaactcaca agaactcgac 2400 gcatggaata ggtctaccat acaaactcct caacaaggat gttcatcgtc aaatggttga 2460 agaccccaaa ttcctgccgc tcctgacgcg attgacctgg aaccgtttac agaagatgtc 2520 ccaggttgat ttccgggaga tgactcctga acaactagtg agagaaggat tgtgcgaccc 2580 gattcgtttg ttcgtcaaag gggaaccgca caagcaggcc aagcttgatg aagggcgcta 2640 ccgcctcatc atgtcagtct cgctggtaaa tcaactggta ccccgggttt tgttccaagc 2700 gcaaaacaag agagagatag ctttgtggag agctatcccg tcaaagcccg gttttggctt 2760 atccacagac agggaagcac gcgaattcat agaatccctg tccaagacag tagggtgttc 2820 cccagctgaa gtcattcgtg gctggcggga caagatcgta cccaccgact gttccggctt 2880 cgactggtca gtcgccgact ggatgctcga ggacgatatg gaagtgagaa accttctcac 2940 tatcaacaac aacgagctca cccggcgcct tcgggcatgc tggctgaagt gcatcactaa 3000 ctcagtgatt tgcacgtccg gcggtgtcct gtacgcccaa actcaccctg gtgtgcagaa 3060 atctggatct tacaacacga gttcatccaa ttccagggtt cgagtgatgg ccgcttttca 3120 ttgcggtgct gattgggcga tagccatggg ggatgacgca cttgaatcac caaactccaa 3180 catcaacgcg tatcaaaagt tggggttcaa agtcgaggtt gcttcacagc tagaattttg 3240 ctcacacgtc tttgagcagg aagacctcgc caggccgttg aacgtaaaca agatgcttta 3300 tcgtttgata tttggataca atccggcctg tggcaacgcg gaggtattgt gcaattacct 3360 ccaagctgtg gcttcagttc tcaacgagtt acgccacgat ccgcagctag ttgccaccct 3420 ccaccagtgg ttggttcctg gcgccaccac aaaataaata cggagggtca tcccgagcca 3480 ccatttaggt tgcgagagtg gaacgggcag tcctaacaag ccgcgagatt ctggattaca 3540 agctactagc tggggtcctt attggcattc tcattgcgat ccccctagtg attttagcgg 3600 cttacctgat attcctcaaa atcagtgcac atatccgagc gattgttaat gaatacgggc 3660 gctaaccgct cacgaaggaa tgtcagaaga cgcgctaacc gtcgtcgaca gactcggcca 3720 gtggtcgtgg tccggcctgc cgcaggacct agacgagtac gacgacgtag agcacgtgtt 3780 ggaggaaacg ctgtgcgagg accgggagga agaagcaaca gggatgttct cactttcacg 3840 attgacgatc tcaaggccaa ctcaaccggg atcctcaaat tcggaccgaa cctatctcag 3900 tacgcagcgt tcaacaatgg cttactcaaa gcctaccatg agtataaaat cacaagtctc 3960 acaactcagt ataactcatg ctcctccgac gcaactccag gtgcaatcgc acttgaagtg 4020 gatacatcct gctcccaaac aacaacaggc tccaagatta ctagcttccc cgtcaagagg 4080 aacgccaaga aaaccttccc ggcccccttc atcaggggga aagacttcat gactacatca 4140 gctgatcagt tttggctttt gtacaaaggg aatggagacg gaagcctagc aggacaattc 4200 gtctgccgat ttgaatgttt attccagaat cccaaatagg taggcgacgc tccccctaca 4260 cccacaccac aaccaacccc acccgctccg gccccggcac cagcacctaa atattttgga 4320 tatcaaggtg tgccgaacaa catcgtcaaa actcgaggca actcagagta tctcgatgtg 4380 ggccaactcg atagcgtgac catgtacctc tggaaagatg aatcatggag catcgagcaa 4440 ctgccagccg gatatcgagt caacactcaa gatcgtgcca taccttatct cctcattcct 4500 gtggagaaag gaaaatactc cgtgttcata caatgtgagg gctttaaggc agtgaaagcc 4560 aaaggaggca cgaataacgg caaaatgagc gggtttattt gtgataacat aaatctccag 4620 ggttggagag cgtatgcata tagtgggtgt tcaatctcta attacaagac agctgactcg 4680 aacgtgcctg gtcatccaga catgagagtg aacaactgtt cttttaccga ccagctggtc 4740 gagagagatt tttcttgttc atttcacctc gaggtgcctc agaaaggcta ttttggtcta 4800 gaggccccac ccattgaaag gagtgatcat ttcaacttcg tggtgtctta cgctaatttc 4860 actgagaaaa caatggaatg gggatcagtc tccatagcga tagacgaggt gagtgacgga 4920 gcgtatagtg gatcaaaatg ggataagacc actgcaatga gtgctcgttt gcgagaccta 4980 gtgagcgccc catcggaaat ttacactccg gtggcactag tatcttcagc agacgaaggg 5040 acggagagta tgcctccagc cccgaacccg gcactgggac cggacaaccc agcaaccaaa 5100 gagcccgcgc ccaaaatcgt ggactcgccg gatccaaagg ttctcaattg gcttaacaac 5160 caaaaagatg aaccggtggt taatgaggtt ttgcgagaat ctccgattta cgcgcctcca 5220 ccacctccgt ctctaggtca cactcatgtt gatacacaga gacaggcgga taaggtccgg 5280 cgctctctaa tggctaacgc ttcacgttca gcctcacctc ctcctgcagc caccgaggtg 5340 cccgtgtctg gatccgccga taccgtctct caaggcagta ctctccgcgg cgggtctctc 5400 agaggtaatt tgaactctcg cccctccttg ccgagggtcg ctgacagtcc tccccgatct 5460 gtgagtccgg ctcgttctga gaccagtaca ttacaggtcg gttctctgag tggtggttcg 5520 ttgagaggtg gcagccttca ggttttacct gaggccacga gagagcagag gaggcaatac 5580 gaatctttaa agaattcaca agggaagaca gtggcgaaga actatgccaa agagcaaggt 5640 ttcaagccac cgaaatccgc ctccttcttt ggttgagtgt tggaacacta taaactcccc 5700 ctcctcggga cacagggctc cgcacacgag cttaaaccgc gttcgatcca cgaacagaaa 5760 ctggagaact ccgcaaagtt ctaaaactat gcagatgggt tagcgaccca gctcctccat 5820 tgatgttaag catctttgga ggcccaagct aagagggatg gaatacaggg 5870 //