ID JF925153; SV 1; linear; genomic RNA; STD; VRL; 5875 BP. XX AC JF925153; XX DT 26-MAR-2013 (Rel. 116, Created) DT 26-MAR-2013 (Rel. 116, Last updated, Version 1) XX DE Sugarcane yellow leaf virus isolate IND2, complete genome. XX KW . XX OS Sugarcane yellow leaf virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5875 RX AGRICOLA; IND500619386. RA Chinnaraja C., Viswanathan R., Karuppaiah R., Bagyalakshmi K., Malathi P., RA Parameswari B.; RT "Complete genome characterization of Sugarcane yellow leaf virus from RT India: Evidence for RNA recombination"; RL Eur. J. Plant Pathol. 135(2):335-349(2013). XX RN [2] RP 1-5875 RA Viswanathan R., Chinnaraja C., Karuppaiah R., Bagyalakshmi K.; RT ; RL Submitted (03-APR-2011) to the INSDC. RL Pathology, Sugarcane Breeding Institute, Veerakeralam, Coimbatore, RL Tamilnadu 641007, India XX DR MD5; 1caa931c0e437344115f8be9381ada22. DR EuropePMC; PMC4422679; 25946037. XX FH Key Location/Qualifiers FH FT source 1..5875 FT /organism="Sugarcane yellow leaf virus" FT /host="Saccharum hybrid cultivar Co 86032" FT /isolate="IND2" FT /mol_type="genomic RNA" FT /country="India:Coimbatore" FT /collected_by="C. Chinnaraja" FT /collection_date="26-May-2010" FT /identified_by="R. Viswanathan" FT /db_xref="taxon:94290" FT 5'UTR 1..66 FT CDS 67..837 FT /codon_start=1 FT /product="RNA silencing suppresser protein" FT /note="ORF0" FT /db_xref="InterPro:IPR021411" FT /db_xref="UniProtKB/TrEMBL:M4GJZ1" FT /protein_id="AEG20958.1" FT /translation="MLFNEFSVQGIKFRAHASTSPVLREDVSRCLTYYRVFACRWIELT FT YSDEHTRHLVHNFYGPNTPVYYGLDHIRAVVATMVPILLLPDTTLGQHLHIKRQFLKSV FT LLWLAQNKLYYRVTRCFSRRFTLEQEPISAELFRTQLLKYVGMDIFQDVARLQNILERG FT YDPFRSVLGVLLRERERFVDRVLEQPPLDPSQTLRLCFHYHDTLDHDDSDSDMETARHN FT RLFGLPIIRNLPDDEKALFIHSNLVGASTFASDV" FT CDS join(266..1738,1738..3453) FT /codon_start=1 FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase" FT /note="ORF2" FT /db_xref="GOA:M4GJX5" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:M4GJX5" FT /protein_id="AEG20960.1" FT /translation="MGWIIFALLLLQWCRYSSCQTQPWDSTSISKGSFSSLSFYGWPKI FT NSTIELHGASPGGSLSSKSPSQPNFSELNYSSMLGWIFFKMWLDCKTFSREAMILSDRF FT LGYSFENAKGLSIEFLNNLLWILVRLYVCAFTIMIRWIMTIAILTWRPLVTIAFLVFLS FT SATYQMMKKLYSFTQIWWVLAPLLVMFRLAMYLRRRLFSNRGDEKMVAGFKSFAVPMTP FT PGHAVLEIVHPDNSHMGYASCVRLKNGEKALLTSVHCINETFKVRSLRNGVKIPLTEFQ FT VLLPAKNIDLVLLRGPPEWKSILGAKAAHFTPANQLNKGAVSIFVHDGEWKMHNAKVTG FT TDGFYATVLSNTEKGFSGAPYWNGKSIVGVHKGYVYGDDSKNYNLMAPIPPVVGLTAPA FT FVYESPSLQGDVFSDADVSDMADYAEEVYEKALAEPKVWKPASGKYWWEMAEEEDDFVV FT EAKPPPPESPVEKAPGEKQTPACTVEKASTPVEADSGPGKRAEWRRPLKNTGIHPAQAR FT RIYKKVAQQHRLAIDPKDRPEFHCNEGGGETAAKSTEQTAAERGEEVAAKTQDLEHFFQ FT AAYKWEESTSDIPGSGSAANSQRYTIPQNRKAHNGESTSSQNTQRWTSKVAGFGWPLFG FT AQAEETSLRLQAARWLKRAELAEKPTATQRRLVLIVWLRHMNRVKPMPHTPAPLVASCG FT TVSSRILKRLSTTLELDAGIGLPYKLLNKDVHRQMVEDPKFLPLLTRLTWNRLQKMSQV FT DFREMTPEQLVREGLCDPIRLFVKGEPHKQAKLDEGRYRLIMSVSLVDQLVARVLFQAQ FT NKKEIALWRAIPSKPGFGLSTDREAREFIESLSKTVGCSPAEVIRGWRDKIVPTDCSGF FT DWSVADWMLEDDMEVRNLLTINNNELTRRLRACWLKCITNSVICTSGGVLYAQTHPGVQ FT KSGSYNTSSSNSRVRVMAAFHCGADWAIAMGDDALESPNSNINAYQKLGFKVEVASQLE FT FCSHVFEQEDLARPLNINKMLYRLIFGYNPACGNAEVLCNYLQAVASVLNELRHDPQLV FT ATLHQWLVPGATTK" FT CDS 266..2194 FT /codon_start=1 FT /product="multifunctional protein" FT /note="ORF1" FT /db_xref="GOA:M4GJW9" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:M4GJW9" FT /protein_id="AEG20959.1" FT /translation="MGWIIFALLLLQWCRYSSCQTQPWDSTSISKGSFSSLSFYGWPKI FT NSTIELHGASPGGSLSSKSPSQPNFSELNYSSMLGWIFFKMWLDCKTFSREAMILSDRF FT LGYSFENAKGLSIEFLNNLLWILVRLYVCAFTIMIRWIMTIAILTWRPLVTIAFLVFLS FT SATYQMMKKLYSFTQIWWVLAPLLVMFRLAMYLRRRLFSNRGDEKMVAGFKSFAVPMTP FT PGHAVLEIVHPDNSHMGYASCVRLKNGEKALLTSVHCINETFKVRSLRNGVKIPLTEFQ FT VLLPAKNIDLVLLRGPPEWKSILGAKAAHFTPANQLNKGAVSIFVHDGEWKMHNAKVTG FT TDGFYATVLSNTEKGFSGAPYWNGKSIVGVHKGYVYGDDSKNYNLMAPIPPVVGLTAPA FT FVYESPSLQGDVFSDADVSDMADYAEEVYEKALAEPKVWKPASGKYWWEMAEEEDDFVV FT EAKPPPPESPVEKAPGEKQTPACTVEKASTPVEQTPVQGNEPSGADHLKTPESTPLKPD FT ESTKKLLNNIVSQLIQKIDLNSIATRVEEKLLQKAQNKQQQNGGKKSPRKRKTSNTFSK FT PPTNGKSPPATSPVQEVRQTPSAIPSPKTEKHTMGRAHHLRTPRDGRPKSPDSGGLSSA FT PKPKRQV" FT CDS 3645..5672 FT /codon_start=1 FT /transl_except=(pos:4233..4235,aa:OTHER) FT /product="putative aphid transmission factor" FT /note="ORF5; translational readthrough" FT /db_xref="GOA:M4GJZ2" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:M4GJZ2" FT /protein_id="AEG20963.1" FT /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRPAAGPRRVRRRRARVG FT GNAVRGPGGRSNRDVLIFTIDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL FT TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKTFPAPFIRGKDFMTT FT SADQFWLLYKGNGDGSLAGQFVCRFECLFQNPKXVGDAPPTPTPQPTPPAPAPAPAPKY FT FGYQGVPNNIVKTRGNSEYLDVGQLDSVTMYLWKDESWSIEQLPAGYRVNTQDRAIPYL FT LIPVEKGKYSVFIQCEGFKAVKAKGGTNNGKMSGFICDNINLQGWRAYAYSGCSISNYK FT TADSNVPGHPDMRVNNCSFTDQLVERDFSCSFHLEVPQKGYFGLEAPPIERSDHFNFVV FT SYANFTEKTMEWGSVSIAIDEVSDGAYSGSKWDKTTAMSARLRDLVSAPSEIYTPVALV FT SSADEGTESMPPAPNPALGPDNPATKEPAPKIVDSPDPKVLNWLNNQKDEPVVNEVLRE FT SPIYAPPPPPSLGHTHVDTQRQADKVRRSLMANASRSASPPPVATEVPVSGSADTVSQG FT STLCGGSLRGNLNSRPSLPRVADSPPRSVSPARSETSTLQVGSLSGGSLRGGSLQVLPE FT ATREQRRQYESLKNSQGKTVAKNYAKEQGFKPPKSASFFG" FT CDS 3645..4235 FT /codon_start=1 FT /product="coat protein" FT /note="ORF3" FT /db_xref="GOA:M4GJY7" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:M4GJY7" FT /protein_id="AEG20961.1" FT /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRPAAGPRRVRRRRARVG FT GNAVRGPGGRSNRDVLIFTIDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL FT TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKTFPAPFIRGKDFMTT FT SADQFWLLYKGNGDGSLAGQFVCRFECLFQNPK" FT CDS 3676..4128 FT /codon_start=1 FT /product="movement protein" FT /note="ORF4" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:M4GJY2" FT /protein_id="AEG20962.1" FT /translation="MSEDALTVVDRLGQWSWSGLPQDLDEYDDVEHVLEETLCEDREEE FT ATGMFSFSRLTISRPTQPGSSNSDRTYLSTQRSTMAYSKPTMSIKSQVSQFSITHAPPT FT QLQVQSHLKWIHPAPKQQQAPRLLASPSRGTPRKPSRPPSSGGKTS" XX SQ Sequence 5875 BP; 1572 A; 1532 C; 1439 G; 1329 T; 3 other; acaaaatata tggggaggga aacccctgat atatttagaa ctcagcttct ggttgtaaac 60 tgctytatgc ttttcaacga attcagcgtt caaggcatca agtttagagc acacgcaagc 120 acttcgccag ttttgcgtga ggacgtgagc aggtgtttga cctactacag ggtyttcgct 180 tgcaggtgga ttgaactcac ttattcagac gagcacaccc gccacctggt ccataatttc 240 tatggcccta acacgcctgt ttactatggg ttggatcata ttcgcgctgt tgttgctaca 300 atggtgccga tactcctcct gccagacaca accctgggac agcacctcca tatcaaaagg 360 cagtttctca agtctgtcct tctatggttg gcccaaaata aactctacta tagagttaca 420 cggtgcttct cccggcggtt cactctcgag caagagccca tctcagccga acttttccga 480 actcaactac tcaagtatgt tgggatggat atttttcaag atgtggctag attgcaaaac 540 attctcgaga gaggctatga tcctttccga tcggttcttg gggtactcct tcgagaacgc 600 gaaaggtttg tcgatcgagt tcttgaacaa cctcctctgg atcctagtca gactctacgt 660 ttgtgctttc actatcatga tacgttggat catgacgata gcgattctga catggagacc 720 gctcgtcaca atcgcctttt tggtcttcct atcatccgca acctaccaga tgatgaaaaa 780 gctttattca ttcactcaaa tctggtgggt gctagcacct ttgctagtga tgtttaggtt 840 ggccatgtat ttaaggcgga ggttgttctc gaatcgtggg gacgaraaaa tggttgcagg 900 tttcaaaagc tttgcagtcc ccatgacccc accgggacac gctgtacttg aaatagtaca 960 cccagacaac tcccacatgg gatatgcatc ctgtgtacga ttgaaaaacg gggaaaaggc 1020 tctcttgaca tctgttcact gcattaacga aacctttaag gttcgttccc tcaggaatgg 1080 agtcaaaata cctctaacgg aatttcaggt acttttaccc gccaagaata ttgacttagt 1140 tcttcttcga ggcccacctg agtggaagtc tattcttgga gccaaagcag cccatttcac 1200 tccagcaaac cagctcaaca aaggagctgt gtccatcttc gttcacgatg gtgagtggaa 1260 aatgcacaat gcaaaggtta cgggcactga tggtttttac gccacagtgt tgagtaacac 1320 agagaagggc ttcagtggcg ccccctactg gaacggcaaa agcatagtag gggttcacaa 1380 agggtacgtg tatggggatg attcaaagaa ctacaatctc atggcgccaa tcccccctgt 1440 tgtggggttg acggcgccag catttgttta tgaatccccc tctctgcaag gagatgtctt 1500 tagcgatgcc gacgtttcag acatggctga ttacgctgaa gaagtgtatg aaaaagccct 1560 tgcagagccc aaagtgtgga aacccgccag cggcaaatac tggtgggaaa tggccgaaga 1620 agaggatgat ttcgtggttg aagcgaaacc tcctccccct gaatcccccg ttgagaaagc 1680 tccaggagag aagcagactc cagcatgtac tgttgagaaa gcttcgactc ctgtcgagca 1740 gactccggtc cagggaaacg agccgagtgg cgccgaccac ttaaaaacac cggaatccac 1800 cccgctcaag ccagacgaat ctacaaaaaa gttgctcaac aacatcgtct cgcaattgat 1860 ccaaaagatc gacctgaatt ccattgcaac gagggtggag gagaaactgc tgcaaaaagc 1920 acagaacaaa cagcagcaga acggggggaa gaagtcgccg cgaaaacgca agacctcgaa 1980 cactttttcc aagccgccta caaatgggaa gagtccacca gcgacatccc cggttcagga 2040 agtgcggcaa actcccagcg ctataccatc ccccaaaacc gaaaagcaca caatggggag 2100 agcacatcat ctcagaacac ccagagatgg acgtccaaag tcgccggatt cgggtggcct 2160 ctcttcggcg cccaagccga agagacaagt ctgaggctcc aagcggcccg ctggctcaaa 2220 cgagccgagc tagcggaaaa gccgactgca acacaacgca ggctcgtctt gatcgtgtgg 2280 ttaaggcata tgaaccgtgt aaaaccaatg ccccacacac cagctcctct ggtagcctcc 2340 tgtggaacgg tttcctcaag gattttaaag aggctatcaa ctacactaga actcgacgct 2400 ggaataggtc tcccatacaa actcctcaac aaggatgttc atcgtcaaat ggttgaagac 2460 cccaaattcc tgccgctcct gacgcgattg acctggaacc gtttacagaa gatgtcccag 2520 gttgatttcc gggagatgac tccagaacaa ctagtgagag aaggattgtg cgacccgatt 2580 cgtttgttcg tcaaagggga accgcacaag caggccaagc ttgatgaagg gcgctaccgc 2640 ctcatcatgt cagtctcgct ggtagatcaa ctggtagccc gggttttgtt ccaagcgcaa 2700 aacaagaaag agatagcttt gtggagagct atcccgtcaa agcccggttt tggcttatcc 2760 acagacaggg aagcacgcga attcatagaa tccctgtcca agacagtagg gtgttcccca 2820 gctgaagtca ttcgtggctg gcgggacaag atcgtaccca ccgactgttc cggtttcgac 2880 tggtcagtcg ccgactggat gctcgaggac gacatggaag tgagaaacct tctcactatc 2940 aacaacaacg agctcacccg gcgccttcgg gcatgctggc tgaagtgcat cactaactca 3000 gtgatttgca cgtccggcgg tgtcttgtac gcccaaactc accctggtgt gcagaaatct 3060 ggatcttaca acacgagttc atccaattcc agggtccgag tgatggccgc ttttcattgc 3120 ggtgctgatt gggcgatagc catgggggat gacgcacttg aatccccaaa ctccaacatc 3180 aacgcgtatc aaaagttggg gttcaaagtc gaggttgctt cacagctaga attttgctca 3240 cacgtctttg agcaggaaga cctcgccagg ccgttgaaca taaacaagat gctttatcgt 3300 ttgatatttg gatacaatcc ggcctgtggc aacgcggagg tattgtgcaa ttacctccaa 3360 gctgtggctt cagttctcaa cgagttacgc cacgatccgc agctagttgc caccctccac 3420 cagtggttgg ttcctggcgc caccacaaaa taaatacgga gggtcatccc gagccaccat 3480 ttaggttgcg agagtggaac gggcagtcct aacaagccgc gagattctgg attacaagct 3540 actagctggg gtccttattg gcattctcat tgcgatcccc ctagtgattt tagcggctta 3600 cctgatattc ctcaaaatca gtgcacatat ccgagcgatt gttaatgaat acgggcgcta 3660 accgctcacg aaggaatgtc agaagacgcg ctaaccgtcg tcgacagact cggccagtgg 3720 tcgtggtccg gcctgccgca ggacctagac gagtacgacg acgtagagca cgtgttggag 3780 gaaacgctgt gcgaggaccg ggaggaagaa gcaacaggga tgttctcatt ttcacgattg 3840 acgatctcaa ggccaactca accgggatcc tcaaattcgg accgaaccta tctcagtacg 3900 cagcgttcaa caatggctta ctcaaagcct accatgagta taaaatcaca agtctcacaa 3960 ttcagtataa ctcatgctcc tccgacgcaa ctccaggtgc aatcgcactt gaagtggata 4020 catcctgctc ccaaacaaca acaggctcca agattactag cttccccgtc aagaggaacg 4080 ccaagaaaac cttcccggcc cccttcatca gggggaaaga cttcatgact acatcagctg 4140 atcagttttg gcttttgtac aaagggaatg gagacggaag cctagcagga caattcgtct 4200 gccgatttga atgtttattc cagaatccca aataggtagg cgacgctccc cccacaccca 4260 caccacaacc aaccccaccc gctccggccc cggcaccagc acctaaatat tttggatatc 4320 aaggtgtgcc gaacaacatc gtcaaaactc gaggcaactc agagtatctc gatgtgggcc 4380 aactcgatag cgtgaccatg tacctctgga aagatgaatc atggagcatc gagcaactgc 4440 cagccggata tcgagtcaac actcaagatc gtgccatacc ttatctcctc attcctgtgg 4500 agaaaggaaa atactccgtg ttcatacaat gtgagggctt taaggcagtg aaagccaaag 4560 gaggcacgaa taacggcaaa atgagcgggt ttatttgtga taacataaat ctccagggtt 4620 ggagagcgta tgcatatagt gggtgttcaa tctctaatta caagacagct gactcgaacg 4680 tgcctggtca tccagacatg agagtgaaca actgttcttt taccgaccag ctggtcgaga 4740 gagatttttc ttgttcattt cacctcgagg tgcctcagaa aggctatttt ggtctagagg 4800 ccccacccat tgaaaggagt gatcatttca acttcgtggt gtcttacgct aatttcactg 4860 agaaaacaat ggaatgggga tcagtctcca tagcgataga cgaggtgagt gacggagcgt 4920 atagtggatc aaaatgggat aagaccactg caatgagtgc tcgtttgcga gacctagtga 4980 gcgccccatc ggaaatttac actccggtgg cactagtatc ttcagcagac gaagggacgg 5040 agagtatgcc tccagccccg aacccggcac tgggaccgga caacccagca accaaagagc 5100 ccgcgcccaa aatcgtggac tcgccggatc caaaggttct caattggctt aacaaccaaa 5160 aagatgaacc ggtggttaat gaggttttgc gagaatctcc gatttacgcg cctccaccac 5220 ctccgtctct aggtcacact catgttgata cacagagaca ggcggataag gtccggcgct 5280 ctctaatggc taacgcttca cgttcagcct cacctcctcc tgtagccacc gaggtgcccg 5340 tgtctggatc cgccgatacc gtctctcaag gcagtactct ttgcggcggg tctctcagag 5400 gtaatttgaa ctctcgcccc tccttgccga gggtcgctga cagtcctccc cgatctgtaa 5460 gtccggctcg ttctgagacc agtacattac aggttggttc tctgagtggt ggttcgttga 5520 gaggtggcag cctccaggtt ttacctgagg ccacgagaga gcagaggagg caatacgaat 5580 ctttgaaaaa ttcacaaggg aagacagtgg cgaagaacta tgccaaagag caaggtttca 5640 agccaccgaa atccgcctcc ttctttggtt gagtgttgga acactataaa ctccccctcc 5700 tcgggacaca gggctccgca catgagcata aaccgcgttc gatccacgaa cagaaactgg 5760 agaactccgc aaagttctaa aactatgcag atgggttagc gacccagctc ctccattgat 5820 gttaagcatc ttaggaggcc caagctaaga gggatggaat acagggaggc actgc 5875 //