ID JF925152; SV 1; linear; genomic RNA; STD; VRL; 5875 BP. XX AC JF925152; XX DT 26-MAR-2013 (Rel. 116, Created) DT 26-MAR-2013 (Rel. 116, Last updated, Version 1) XX DE Sugarcane yellow leaf virus isolate IND1, complete genome. XX KW . XX OS Sugarcane yellow leaf virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5875 RX AGRICOLA; IND500619386. RA Chinnaraja C., Viswanathan R., Karuppaiah R., Bagyalakshmi K., Malathi P., RA Parameswari B.; RT "Complete genome characterization of Sugarcane yellow leaf virus from RT India: Evidence for RNA recombination"; RL Eur. J. Plant Pathol. 135(2):335-349(2013). XX RN [2] RP 1-5875 RA Viswanathan R., Chinnaraja C., Karuppaiah R., Bagyalakshmi K.; RT ; RL Submitted (03-APR-2011) to the INSDC. RL Pathology, Sugarcane Breeding Institute, Veerakeralam, Coimbatore, RL Tamilnadu 641007, India XX DR MD5; a4a8666b1cf06d57fb54e2f1b54d95f3. DR EuropePMC; PMC4422679; 25946037. XX FH Key Location/Qualifiers FH FT source 1..5875 FT /organism="Sugarcane yellow leaf virus" FT /host="Saccharum hybrid cultivar B38192" FT /isolate="IND1" FT /mol_type="genomic RNA" FT /country="India:Coimbatore" FT /collected_by="C. Chinnaraja" FT /collection_date="26-May-2010" FT /identified_by="R. Viswanathan" FT /db_xref="taxon:94290" FT 5'UTR 1..66 FT CDS 67..837 FT /codon_start=1 FT /product="RNA silencing suppresser protein" FT /note="ORF0" FT /db_xref="InterPro:IPR021411" FT /db_xref="UniProtKB/TrEMBL:M4GJY0" FT /protein_id="AEG20952.1" FT /translation="MLFNEFSVQGIKFRAHASTSPVLREDVSRCLTYYRVFACRWIQLT FT YSDEHTRHLVHNFYGPNTPVYYGLDHIRAIVATMVPILLLPDTTLGQHLHIKGQFLKSV FT LLWLARNKLYYRVTRLFSRRFTLEQEPISAVLFRTQLLKYVGMDIFQDVARLQNILERG FT YDPFRSVLGVLLRERERFVDRVLEQPPLDPSQTLRLCFHYHNTLDHDNSDSDMETARHN FT RLFGLPIIRDLPDDEKALFIHSNLVGASTSASDV" FT CDS join(266..1738,1738..3453) FT /codon_start=1 FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase" FT /note="ORF2" FT /db_xref="GOA:M4GJW8" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:M4GJW8" FT /protein_id="AEG20954.1" FT /translation="MGWIIFALLLLQWCQYSSCQTQPWDSTSISKDSFSSLSFYGWPGT FT NSTIELHGSSPGGSLSSKSPSQPYFSELNYSSMLGWIFFKMWLDCKTFSREAMILSDRS FT LGYSFENAKGLSIEFLNNLLWILVRLYVYAFTIIIRWIMTIVILTWRPLVTIAFLVFLS FT SATYQMMKKLYSFIQIWWVLAPLLVMFRLAMYMRRRLFSNRGDEKMVAGFKSFAVPMTP FT PGHAVLEIVHPDDSHMGFASCVRLKNGEEALLTSVHCINETFKVRSLRNGVKIPLTEFQ FT VLLPAKNIDLVLLRGPPEWKSILGAKAAHFTPANQLNKGAVSIFVHDGEWKMHNAKVTG FT TDGFYATVLSNTEKGFSGAPYWNGKSIVGVHKGYVYGDDSKNYNLMAPIPPVVGLTAPA FT FVYESPSLQGDVFSDADVSDMADYAEEVYEKALAEPKVWKPASGKYWWEMAEEEDDFVV FT EAKPPPPESPVEKVPGEKQTPACTVEKASTPVEADSGPGKRAKWRRPLKNTGIHPAQAR FT RIYKRVAQQHRLAVDPKDRPELHCNEGGGETAAKSTEQTAAERREEVAAKTQDLEHFFQ FT AAYKWEESTSDIPGSGSAANSQRYTIPQNRKAHNGGSSIISEHPEMASKVAGFGWPLFG FT AQAEETSLRLQAARWFKRAELAEKPTATQRRLVLIVWLRHINRVKPMPHTPAPLVASCG FT TISSRILKRLSTTLELDAGIGLPYKLLNKDVHRQMVEDPKFLPLLTRLTWNRLQKMSQV FT DFREMTPEQLVREGLCDPIRLFVKGEPHKQAKLDEGRYRLIMSVSLVDQLVARVLFQAQ FT NKREIALWRAIPSKPGFGLSTDREAREFIESLSKTVGCSPAEVIRGWRDKIVPTDCSGF FT DWSVADWMLEDDMEVRNLLTINNNELTRRLRACWLKCITNSVICTSGGVLYAQTHPGVQ FT KSGSYNTSSSNSRVRVMAAFHCGADWAIAMGDDALESPNSNINAYQKLGFKVEVASQLE FT FCSHVFEQEDLARPLNVNKMLYRLIFGYNPACGNAEVLCNYLQAVASVLNELRHDPQLV FT ATLHQWLVPGATTK" FT CDS 266..2194 FT /codon_start=1 FT /product="multifunctional protein" FT /note="ORF1" FT /db_xref="GOA:M4GJZ0" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:M4GJZ0" FT /protein_id="AEG20953.1" FT /translation="MGWIIFALLLLQWCQYSSCQTQPWDSTSISKDSFSSLSFYGWPGT FT NSTIELHGSSPGGSLSSKSPSQPYFSELNYSSMLGWIFFKMWLDCKTFSREAMILSDRS FT LGYSFENAKGLSIEFLNNLLWILVRLYVYAFTIIIRWIMTIVILTWRPLVTIAFLVFLS FT SATYQMMKKLYSFIQIWWVLAPLLVMFRLAMYMRRRLFSNRGDEKMVAGFKSFAVPMTP FT PGHAVLEIVHPDDSHMGFASCVRLKNGEEALLTSVHCINETFKVRSLRNGVKIPLTEFQ FT VLLPAKNIDLVLLRGPPEWKSILGAKAAHFTPANQLNKGAVSIFVHDGEWKMHNAKVTG FT TDGFYATVLSNTEKGFSGAPYWNGKSIVGVHKGYVYGDDSKNYNLMAPIPPVVGLTAPA FT FVYESPSLQGDVFSDADVSDMADYAEEVYEKALAEPKVWKPASGKYWWEMAEEEDDFVV FT EAKPPPPESPVEKVPGEKQTPACTVEKASTPVEQTPVQGNEPSGADHLKTPESTPLKPD FT ESTKELLNNIVSQLIQKIDLSSIATRVEEKLLQKAQNKQQQNGGKKSPRKRKTSNTSSK FT PPTNGKSPPVISPVQEVRQTPSAIPSPKTEKHTMGGAASSQNTQRWRPKSPDSGGLSSA FT LKPKRQV" FT CDS 3645..5672 FT /codon_start=1 FT /transl_except=(pos:4233..4235,aa:OTHER) FT /product="putative aphid transmission factor" FT /note="ORF5; translational readthrough" FT /db_xref="GOA:M4GJY1" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:M4GJY1" FT /protein_id="AEG20957.1" FT /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRPAAGPRRVRRRRARVG FT GNAVRGPGGRSNRDVLTFTIDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL FT TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKTFPAPFIRGKDFMTT FT SADQFWLLYKGNGDGSLAGQFVCRFECLFQNPKXVGDAPPTPTPQPTPPAPAPAPAPKY FT FGYQGVPNNIIRTRGNSEYLDVGQLDSVTMYLWQDESWSIEQLPAGFRVNTQDRAIPYL FT LIPVEKGKYSVFIQCEGFKAVKAEGGTNNGKMSGFICDNTNLQGWRAYAYSGCSISKYK FT TADSIVPGHPDMRVNNCSFTDQLVERDFSCSFHLEVPQKGYFGLEAPPIEKSDHFNFVV FT SSANFTEKTMEWGSVSIAIDEVSDGAYSGSKWDKTTAMSARLRDLVSAPSEVYTPVALV FT SSADEGTESTPPAPNPALGPDNPATKEPAPKIVDSPDPKVLNWLNNQKDEPVVNEVLRE FT SPIYAPPPPPSLGHTHVDTQRQADKVRRSLMANASRSASPPPVSTEVPVLGSADTASQG FT STLRGGSLRGNLNSRPFLPRVADSPPRSVSPARSETSTLQAGSLSGGSLRGGSLQVLPE FT ATREQRRQYESLKNSQGKTVARNYAREQGFKPPKSASFFG" FT CDS 3645..4235 FT /codon_start=1 FT /product="coat protein" FT /note="ORF3" FT /db_xref="GOA:B7U4M6" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:B7U4M6" FT /protein_id="AEG20955.1" FT /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRPAAGPRRVRRRRARVG FT GNAVRGPGGRSNRDVLTFTIDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL FT TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKTFPAPFIRGKDFMTT FT SADQFWLLYKGNGDGSLAGQFVCRFECLFQNPK" FT CDS 3676..4128 FT /codon_start=1 FT /product="movement protein" FT /note="ORF4" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:M4GJY6" FT /protein_id="AEG20956.1" FT /translation="MSEDALTVVDRLGQWSWSGLPQDLDEYDDVEHVLEETLCEDREEE FT ATGMFSLSRLTISRPTQPGSSNSDRTYLSTQRSTMAYSKPTMSIKSQVSLFSITHAPPT FT QLQVQSHLKWIHPAPKQQQAPRLQASPSRGTPRKPSRPPSSGGKTS" FT 3'UTR 5673..5875 XX SQ Sequence 5875 BP; 1558 A; 1542 C; 1445 G; 1330 T; 0 other; acaaaatata tcgggaggga aacccctgat atatttagaa ctcagcctct ggttgtaaac 60 tgctctatgc ttttcaacga attcagcgtt caaggcatca agtttagagc acacgcaagt 120 acttcgccag ttttgcgtga ggacgtgagc aggtgcttga cctattacag ggtcttcgct 180 tgcaggtgga tacaactcac ctactcagac gagcacactc gccacctggt ccataacttc 240 tatggcccca acacgcctgt ttactatggg ttggatcata ttcgcgctat tgttgctaca 300 atggtgccaa tactcctcct gccagacaca accctgggac agcacctcca tatcaaagga 360 cagtttctca agtctgtcct tctatggttg gcccggaaca aactctacta tagagttaca 420 cggctcttct cccggcggtt cactctcgag caagagccca tctcagccgt acttttccga 480 actcaactac tcaagtatgt tgggatggat atttttcaag atgtggctag attgcaaaac 540 attctcgaga gaggctatga tcctttccga tcggtccttg gggtactcct tcgagaacgc 600 gaaaggtttg tcgatcgagt tcttgaacaa cctcctctgg atcctagtca gactctacgt 660 ttatgctttc actatcataa tacgttggat catgacaata gtgattctga catggagacc 720 gctcgtcaca atcgcctttt tggtcttcct atcatccgcg acttaccaga tgatgaaaaa 780 gctttattca ttcattcaaa tctggtgggt gctagcacct ctgctagtga tgtttaggtt 840 ggccatgtac atgaggcgga ggttgttctc gaatcgtggg gacgagaaaa tggttgcagg 900 tttcaaaagc tttgcagtcc ccatgactcc accgggacac gctgtacttg aaatagtaca 960 cccagacgac tcccacatgg gatttgcatc ctgtgtacga ttgaaaaacg gggaagaggc 1020 tctcttgaca tctgttcact gcattaacga aacctttaag gttcgttccc tcaggaatgg 1080 agtcaaaata cctctaacgg aatttcaggt acttttaccc gccaagaata tcgacttagt 1140 tcttcttcga ggcccacctg agtggaagtc tattcttgga gccaaagcag cccatttcac 1200 tccagcaaac cagctcaaca aaggagctgt gtccatcttc gttcacgatg gtgagtggaa 1260 aatgcacaat gcaaaggtta cgggcactga tggtttttac gccacggtgt tgagtaacac 1320 agagaagggc ttcagtggcg ccccctactg gaacggcaaa agcatagtag gggttcacaa 1380 agggtacgtg tatggggatg attcaaagaa ctacaatctc atggcgccaa tcccccctgt 1440 tgtggggttg acggcgccag catttgttta tgaatccccc tctctgcaag gagatgtctt 1500 tagcgatgcc gacgtttcag acatggctga ttacgctgaa gaagtgtatg aaaaagccct 1560 tgcagagccc aaagtgtgga aacccgccag cggcaaatac tggtgggaaa tggccgaaga 1620 agaggatgat ttcgtggttg aagcgaaacc tcctccccct gaatcccccg ttgagaaagt 1680 tccaggagag aagcagactc cagcttgtac tgttgagaaa gcttcgactc ctgtcgagca 1740 gactccggtc cagggaaacg agccaagtgg cgccgaccac ttaaaaacac cggaatccac 1800 cccgctcaag ccagacgaat ctacaaaaga gttgctcaac aacatcgtct cgcagttgat 1860 ccaaaagatc gacctgagct ccattgcaac gagggtggag gagaaactgc tgcaaaaagc 1920 acagaacaaa cagcagcaga acggagggaa gaagtcgccg cgaaaacgca agacctcgaa 1980 cacttcttcc aagccgccta caaatgggaa gagtccacca gtgatatccc cggttcagga 2040 agtgcggcaa actcccagcg ctataccatc ccccaaaacc gaaaagcaca caatgggggg 2100 agcagcatca tctcagaaca cccagagatg gcgtccaaag tcgccggatt cgggtggcct 2160 ctcttcggcg ctcaagccga agagacaagt ctgaggctcc aagcggcccg ctggttcaaa 2220 cgagccgagc tagcggaaaa gccgactgca acacaacgca ggctcgtctt gatcgtgtgg 2280 ttaaggcata taaaccgtgt aaaaccaatg ccccacacac cagctcctct ggtagcctcc 2340 tgtggaacga tttcctcaag gattttaaag aggctatcaa ctacactaga acttgacgca 2400 ggaataggtc tcccatacaa actcctcaac aaggacgttc atcgtcaaat ggttgaagac 2460 cccaaattcc tgccactcct gacgcgattg acctggaacc gtttacagaa gatgtcccag 2520 gttgatttcc gggagatgac tcctgaacag ctagtgagag aaggattgtg cgacccgatc 2580 cgtttgttcg tcaaagggga accgcacaag caggccaagc ttgatgaagg gcgctaccgc 2640 ctcatcatgt cagtctcgct ggtagatcaa ctggtagccc gggttttgtt ccaagcgcaa 2700 aacaagagag agatagcttt gtggagagct atcccgtcaa agcccggttt tggcttatcc 2760 acagacaggg aagcacgcga attcatagaa tccctgtcca agacagtagg gtgttcccca 2820 gctgaagtca ttcgtggctg gcgggacaag atcgtaccca ccgactgttc cggcttcgac 2880 tggtcagtcg ccgactggat gctcgaggac gacatggaag tgagaaacct tctcactatc 2940 aacaacaacg agctcacccg gcgccttcgg gcatgctggc tgaagtgcat cactaactca 3000 gtgatttgca cgtccggcgg tgtcttgtac gcccaaactc accctggtgt gcagaaatct 3060 ggatcttaca acacgagttc atccaattcc agggttcgag tgatggccgc ttttcattgc 3120 ggtgctgatt gggcgatagc catgggggat gacgcacttg aatccccaaa ctccaacatc 3180 aacgcgtatc aaaagttggg gttcaaagtc gaggttgctt cacagctaga attttgctca 3240 cacgtctttg agcaggaaga cctcgccagg ccgttgaacg taaacaagat gctttatcgt 3300 ttgatatttg gatacaatcc ggcctgtggc aacgcggagg tattgtgcaa ttacctccaa 3360 gctgtggctt cagttctcaa cgagttacgc cacgatccgc agctagttgc caccctccac 3420 cagtggttgg ttcctggcgc caccacaaaa taaatacgga gggtcatccc gagccaccat 3480 ttaggttgcg agagtggaac gggcagtcct aacaagccgc gagattctgg atttcaagct 3540 actagctggg gtccttattg gcattttcat tgcgatcccc ctagtgattt tagcggctta 3600 cctgatattc ctcaaaatca gtgcacatat ccgagcgatt gttaatgaat acgggcgcta 3660 accgctcacg aaggaatgtc agaagacgcg ctaaccgtcg tcgacagact cggccagtgg 3720 tcgtggtccg gcctgccgca ggacctagac gagtacgacg acgtagagca cgtgttggag 3780 gaaacgctgt gcgaggaccg ggaggaagaa gcaacaggga tgttctcact ttcacgattg 3840 acgatctcaa ggccaactca accgggatcc tcaaattcgg accgaactta tctcagtacg 3900 cagcgttcaa caatggctta ctcaaagcct accatgagta taaaatcaca agtctcacta 3960 ttcagtataa ctcatgctcc tccgacgcaa ctccaggtgc aatcgcactt gaagtggata 4020 catcctgctc ccaaacaaca acaggctcca agattacaag cttccccgtc aagaggaacg 4080 ccaagaaaac cttcccggcc cccttcatca gggggaaaga cttcatgact acatcagctg 4140 atcagttttg gcttttgtac aaagggaatg gagacggaag cctagcagga caattcgtct 4200 gccgatttga atgtttattc cagaatccca aataggtagg cgacgctccc cccacaccca 4260 caccacaacc aaccccacct gctccggccc cggcaccagc acctaaatat tttggatatc 4320 aaggtgtgcc gaacaacatc atcagaactc gaggaaactc agagtatctc gatgtgggcc 4380 aactcgatag cgtgaccatg tacctctggc aagatgaatc atggagcatc gagcaactgc 4440 cagccggatt tcgagtcaac actcaagatc gtgccatacc ttatctcctc attcctgtgg 4500 agaaaggaaa atactccgtg ttcatacaat gtgagggctt taaggcagtg aaagccgaag 4560 gaggcacgaa taacggcaaa atgagcgggt ttatctgtga caatacaaat ctccagggtt 4620 ggagagcgta tgcatatagt gggtgttcaa tctctaaata caagacagct gactcgattg 4680 tgcctggcca tccagacatg agagtgaaca actgttcttt taccgatcag ttggtcgaga 4740 gagatttttc ttgttcattt cacctcgagg tgcctcagaa aggctatttt ggtctagagg 4800 ccccacccat tgaaaagagt gatcatttca acttcgtggt gtctagcgct aatttcactg 4860 agaaaacaat ggaatgggga tcagtctcca tagcgataga cgaggtgagt gacggagcgt 4920 atagtggatc aaaatgggat aagaccactg caatgagtgc tcgtttgcga gacctagtga 4980 gcgccccatc ggaagtttac actccggtgg cactagtatc ttcagcagac gaagggacgg 5040 agagtacgcc tccagccccg aacccggcac tgggaccgga caacccagca accaaagagc 5100 ccgcgcccaa aatcgtggac tcgccggatc caaaggttct caattggctt aacaaccaaa 5160 aagatgaacc ggtggttaat gaggttttgc gagaatctcc gatttacgcg cctccaccac 5220 ctccgtctct aggtcacact catgttgata cacagagaca ggcggataag gtccggcgct 5280 ctctaatggc taacgcttca cgttcagcct cacctcctcc tgtatccacc gaggtgcccg 5340 tgcttggatc cgccgacacc gcctctcaag gcagtactct tcgtggcggg tctctcagag 5400 gtaatttgaa ctctcgcccc ttcttaccga gggtcgctga cagtcctccc cgatctgtaa 5460 gtccggctcg ttctgagacc agcacattac aggccggttc tctgagtggt ggttcgttga 5520 gaggtggcag cctccaggtt ttacctgagg ccacgagaga gcagaggagg cagtacgaat 5580 ctttgaaaaa ttcacaaggg aagacagtgg cgaggaacta tgccagagag caaggtttca 5640 agccaccgaa atccgcctcc ttctttggtt gagtgttgga acactataaa ctccccctcc 5700 tcgggacaca gggctccgca catgagctta aaccgcgttc gatccacgaa cagaaactgg 5760 agaactccgc aaagttctaa aactatgcag atgggttagc gacccagctc ctccattgat 5820 gtttagcatc tttggaggcc caagctaaga gggatggaat acagggaggc actgc 5875 //