ID   JF922011; SV 1; linear; genomic DNA; STD; VRL; 976 BP.
XX
AC   JF922011;
XX
DT   16-OCT-2011 (Rel. 110, Created)
DT   16-OCT-2011 (Rel. 110, Last updated, Version 1)
XX
DE   Tobacco curly shoot virus isolate SILIGU-3 coat protein (AV1) gene, partial
DE   cds; replication enhancer protein (AC3) and transcription activator protein
DE   (AC2) genes, complete cds; and replication associated protein (AC1) gene,
DE   partial cds.
XX
KW   .
XX
OS   Tobacco curly shoot virus
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-976
RA   Saha B., Saha D., Saha A.;
RT   "Molecular detection of begomoviruses infecting weeds in sub-Himalayan West
RT   Bengal, India";
RL   Unpublished.
XX
RN   [2]
RP   1-976
RA   Saha B., Saha D., Saha A.;
RT   ;
RL   Submitted (06-MAY-2011) to the INSDC.
RL   Dept. of Botany, University of North Bengal, Rajarammohanpur, Siliguri,
RL   West Bengal 734013, India
XX
DR   MD5; 1040d8c4e9c3d24fa618e01e2b6722a9.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..976
FT                   /organism="Tobacco curly shoot virus"
FT                   /segment="DNA-A"
FT                   /host="Ageratum conyzoides L."
FT                   /isolate="SILIGU-3"
FT                   /mol_type="genomic DNA"
FT                   /country="India:West Bengal, Siliguri"
FT                   /collected_by="Bikram Saha"
FT                   /collection_date="Jun-2009"
FT                   /db_xref="taxon:180526"
FT   gene            <1..390
FT                   /gene="AV1"
FT   CDS             <1..390
FT                   /codon_start=1
FT                   /gene="AV1"
FT                   /product="coat protein"
FT                   /db_xref="GOA:G4XZM2"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:G4XZM2"
FT                   /protein_id="AEQ29670.1"
FT                   /translation="TKNQTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNVH
FT                   RDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENHSENALMLYM
FT                   ACTHASNPVYATLKIRIYFYDSVTN"
FT   gene            complement(387..791)
FT                   /gene="AC3"
FT   CDS             complement(387..791)
FT                   /codon_start=1
FT                   /gene="AC3"
FT                   /product="replication enhancer protein"
FT                   /db_xref="GOA:G4XZM3"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:G4XZM3"
FT                   /protein_id="AEQ29671.1"
FT                   /translation="MDSRTGELITAAQAENGVYIWEIQNPFYFKIIEHQNRPFVMKEDI
FT                   ITIQIQFKYNMRKALGVHKCFLVYRIWMTSQPQTGRFLRVFKTQVFKYLNNLGIISINN
FT                   VIRAVDHVLWDVLEHIVYVDQSYSIKFNIY"
FT   gene            complement(532..936)
FT                   /gene="AC2"
FT   CDS             complement(532..936)
FT                   /codon_start=1
FT                   /gene="AC2"
FT                   /product="transcription activator protein"
FT                   /db_xref="GOA:G4XZM4"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:G4XZM4"
FT                   /protein_id="AEQ29672.1"
FT                   /translation="MRSSSPSKAHSTQVPIKVKHRLAKKGNRRRRVDLPCGCSYFIALA
FT                   CHDHGFTHRGTHHCSSSREWRVYMGDSKSLLFQDNRAPEPSICHERRHNHHPNTVQIQH
FT                   EESSGSAQVFSSLPNLDDFTASDWSFLKGL"
FT   gene            complement(839..>976)
FT                   /gene="AC1"
FT   CDS             complement(839..>976)
FT                   /codon_start=1
FT                   /gene="AC1"
FT                   /product="replication associated protein"
FT                   /db_xref="UniProtKB/TrEMBL:G4XZM5"
FT                   /protein_id="AEQ29673.1"
FT                   /translation="EEKNTALKNWALKNAIFVTLESPLYSGSNQSEAQASQEGEQTSSC
FT                   "
XX
SQ   Sequence 976 BP; 287 A; 175 C; 198 G; 316 T; 0 other;
     accaagaacc aaactaacag tgttatgttt tttttagtta gggatcgtag gcctgtggat        60
     aaacctcaag attttggaga ggtttttaac atgtttgata atgagcccag tacggctact       120
     gtgaagaatg ttcatcgtga taggtatcaa gtgcttcgca aatggcatgc aactgttacg       180
     ggtggacaat atgcgtccaa ggaacaagcc cttgtgaaga aatttgttag ggttaataat       240
     tatgttgtgt ataaccagca agaagctggc aagtatgaaa atcattctga gaatgcgtta       300
     atgttgtata tggcatgtac tcatgcctct aacccagtgt atgctacttt gaagatacgg       360
     atctatttct atgattccgt aacaaattaa taaatattaa attttattga ataagattgg       420
     tctacatata caatgtgttc taatacatcc cataatacat gatcaactgc acgaattaca       480
     ttattaatac tgataattcc taaattattt aaatatttaa aaacttgagt cttaaagacc       540
     cttaagaaac gaccagtctg aggctgtgaa gtcatccaga ttcggtagac tagaaaacac       600
     ttgtgcactc ccagagcttt cctcatgttg tatttgaact gtatttggat ggtgattatg       660
     tcttctttca tgacaaatgg acggttctgg tgctctatta tcttgaaata aaagggattt       720
     tgaatctccc atatatacac gccattctct gcttgagctg cagtgatgag ttcccctgtg       780
     cgtgaatcca tgatcgtgac atgctagtgc tatgaaatat gaacatccac aagggagatc       840
     aacacgacga cgtctgttcc ccttcttggc tagcctgtgc ttcactttga ttggaacctg       900
     agtagagtgg gctttcgagg gtgacgaaga tcgcattctt taaagcccaa tttttaagtg       960
     ctgtattttt ctcttc                                                       976
//