ID JF920134; SV 1; linear; genomic RNA; STD; VRL; 4219 BP. XX AC JF920134; XX DT 31-MAY-2013 (Rel. 116, Created) DT 31-MAY-2013 (Rel. 116, Last updated, Version 1) XX DE Punique virus strain PI-B4-2008 polyprotein gene, complete cds. XX KW . XX OS Punique virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Ellioviricetes; OC Bunyavirales; Phenuiviridae; Phlebovirus. XX RN [1] RP 1-4219 RA Palacios G., Savji N., Shah A., Lipkin W.I.; RT "Genomic and phylogenetic characterization of Naples serogroup RT phleboviruses"; RL Unpublished. XX RN [2] RP 1-4219 RA Palacios G., Savji N., Shah A., Lipkin W.I.; RT ; RL Submitted (05-MAY-2011) to the INSDC. RL Center for Infection and Immunity, Columbia University, 772 W 168th Street, RL 17th Floor, New York, NY 10032, USA XX DR MD5; b964bbc570b670b32e8380d4f29de37c. DR EuropePMC; PMC3957954; 24390329. XX FH Key Location/Qualifiers FH FT source 1..4219 FT /organism="Punique virus" FT /segment="M" FT /host="Phlebotomus sp." FT /strain="PI-B4-2008" FT /mol_type="genomic RNA" FT /country="Tunisia" FT /collection_date="2008" FT /note="serogroup: Naples" FT /db_xref="taxon:693015" FT CDS 18..4013 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:R4I3L7" FT /db_xref="InterPro:IPR009878" FT /db_xref="InterPro:IPR010826" FT /db_xref="UniProtKB/TrEMBL:R4I3L7" FT /protein_id="AFH88996.1" FT /translation="MFYAKFVIILCLVQGFSLKYTIISKLGSGTTRQVCLSHSTDLDKV FT LEISNMEMDAINLLGGFCTLGELRREDCSPNVFSNYVVNVHGTIHSSNCKFVDIVGDRS FT IEVLNDATPDSFTPGAHNCSSFEKPPFWTDLVPKKNDTDPSPSLLSVLPAAAELDFNLK FT LKEANDKVEAIQRELVAEKARSGRIEDEARTKMRELEDELRRGWIAEREAKELAHKNLE FT EERVSKLEIERRMHDLDKKLRQSENDADRLREQYNKKRKSEEEVKTPKASTLNATTTLA FT TVVLTSLLATGLAAIEQIEERNTNHILNRPGTGVYMASPTLTQTECSLGYGKECKSWEL FT QVSPLHYPFFTSNVDKYSILESITQEPTLLIKNNNSCELTTSPGSQKQCQKESSTIKKY FT CTDDARAYFFIDLGGNLSIVHCSNNFVLSEDCNFCISKSGGVGQKIFMPIQDAFCQRGG FT SESPPVVRYSKDLCSIGLFKIKSCHKSTSRYERMGFIVAGQKKLYLEELKMRYRQEYDE FT DQFFCYKVKSNSPLQYEKVSPSKCKGVGSQDQKCNGDEYFCNRYPCDTNNPDAHCSLRR FT HAAVVEVNVGGVWIKPKCVGYEKVLVKRGGLKTEDLSVRECTSCLWECERNKVVVKTHG FT PKIVSATACSHGSCKSVMQKPSTFLEIPYPGNSEIIGGDIGIHMSERGSPSNIHVVVHC FT KPKDSCDISDCIFCKHGILNYQCHSVASAVLLSTMIAACLALVGVIVSRSKHAVKFLAS FT VVAIPFKWVSLLTVWVVKNWKLRITRVIRATNDAIGWENNLEQVRVENAARRPQPAVRY FT AFYGTTILSILSTGLCCSESLIAESSIMQCTTEDSSTVCKATGTVVLKLGPIGSESCLI FT LKGLRDNEKQFISIKTISSELTCREGESFWTSLYTPVCLSSRRCHLMGECTGDICLKWK FT TNKTSAEFTGKTHSEVIHENKCFEQSGGMGYGCFNVNPSCLMVHSYLKPIYKNAFKVFR FT CVAWNHRVRLGITTHKRNFEITLMAMSTQQTDWGSIGLILDSEGITGTNSYSFMKHGLG FT SFAIIDEPYVTEPRKGYLGEVRCPTEETAVKASPSCKVAPGLIEYQPEMDVVECTTNMM FT DPMAIFNRGSLPQVRDGKTFTQSIEKSSVQALTTGEIHASVRLVLDEYEVEYKVVNNDC FT DSTFVNITGCYSCDEGARLCVKVKASSDVIYHFTDSDNSMNVLFKVSSNIQDYCIVLHF FT SKPVVNVEGKYDCGRSKKPMLIKGTLIAMAPHDDRVTNGGSSIIINPKGGGVDFLGWLS FT GLSSWFGGPLKTFLIIAGFLIVGIIIVIIIIILARLGIQQALAKKLK" XX SQ Sequence 4219 BP; 1296 A; 763 C; 995 G; 1165 T; 0 other; acacaaagaa ggtgcttatg ttttatgcaa agtttgtaat aatcctctgc ttagtgcagg 60 gcttttcttt gaaatataca atcatttcaa agttagggtc tggcactaca agacaagttt 120 gcttaagcca ctcaactgac ttggataagg ttcttgaaat ttccaatatg gagatggatg 180 ccatcaactt gctgggtggt ttctgtacac ttggagaatt aaggagggaa gattgctccc 240 ctaacgtgtt ctcaaactat gttgtcaatg tacacgggac aatacattca tccaattgca 300 agtttgtgga catagttgga gacaggagta ttgaagtcct taatgatgct acaccagata 360 gctttactcc tggagcccac aactgtagca gttttgaaaa accacctttc tggactgacc 420 tggttccaaa aaagaacgat acagaccctt ctccttctct tctctctgtg ctccctgctg 480 ctgccgagct tgactttaat ctaaagctga aagaggccaa tgacaaggtg gaagctattc 540 agagggagtt agttgctgag aaggcaaggt ctgggagaat agaagatgag gctcgcacaa 600 aaatgaggga attggaagat gagctaagaa gaggctggat tgctgagcgg gaagcaaagg 660 agctggctca taagaatctg gaggaagaga gggtaagtaa gcttgagata gaaaggagga 720 tgcatgatct tgacaagaaa ttaaggcagt ccgagaatga cgctgatcga ctgagagagc 780 agtacaacaa gaaaagaaag tcagaagaag aagtgaaaac tccaaaagca tcgacactta 840 atgcgacaac tacactggct acagtggtcc tcacttcttt gttggctact gggcttgctg 900 ctattgaaca gattgaagag agaaacacaa accatatttt gaacagacca gggacaggag 960 tgtacatggc ctcaccgaca cttactcaga cagaatgttc acttggttat ggcaaggagt 1020 gtaaatcttg ggaactgcaa gtcagtccat tacattaccc tttcttcact tctaatgtgg 1080 acaagtacag cattttagaa tctatcactc aggagccaac tctactgatc aaaaacaaca 1140 attcttgtga attgacaaca agtcctggat ctcagaaaca gtgccaaaag gaatctagta 1200 ccataaagaa gtattgtact gatgatgcta gagcctactt ctttattgat ctaggaggaa 1260 atctatcaat tgttcactgc tcaaataact tcgttctttc agaggattgc aatttctgca 1320 tcagcaagtc tggaggggtt ggccagaaaa tcttcatgcc aatacaagat gcattctgtc 1380 agagaggggg atcagagtca cctccagtag tcagatactc taaagacttg tgctctatag 1440 gactcttcaa gattaaaagc tgccataaaa gcacatcaag gtatgagaga atgggtttca 1500 tagtggcagg gcagaagaag ctgtacttag aagaattaaa gatgaggtac agacaagagt 1560 atgatgagga ccagttcttt tgttacaagg taaagtcaaa ctctccactt cagtatgaaa 1620 aggtgtcacc atccaaatgc aaaggggttg gatcacaaga tcagaagtgc aatggagatg 1680 agtacttctg caataggtat ccttgtgata ctaataatcc agatgcacat tgctccttaa 1740 gaagacatgc tgcggttgtc gaggttaatg tcggtggtgt ttggattaag ccaaagtgtg 1800 ttggctatga aaaggtctta gtcaaaagag ggggtttgaa gactgaagac ctatcagtca 1860 gagaatgtac tagctgttta tgggaatgtg agagaaacaa agttgttgta aagactcatg 1920 gccccaagat tgtctctgcc actgcttgta gtcatggatc ttgcaagagt gtcatgcaga 1980 aaccatcaac attcctagag atcccttatc ctggaaatag tgaaattata ggtggagata 2040 ttgggattca tatgagtgag cgaggctcac cttctaacat tcatgttgtt gttcattgca 2100 agcctaagga ttcttgtgat atctcagatt gcattttctg caagcatgga atactgaatt 2160 accaatgcca tagtgtagcc tcagcagtcc tcctctcaac gatgattgct gcctgtctag 2220 ctcttgttgg agtgatagta tccagatcaa agcatgcagt taaattccta gcatctgtag 2280 tggcaatacc attcaaatgg gtgtctctac taactgtctg ggttgtgaag aattggaagc 2340 tcaggataac aagagtcata agagccacaa atgatgcaat aggctgggaa aacaatcttg 2400 aacaagttag agtggaaaat gctgcaagaa gacctcaacc cgcagtcaga tatgcctttt 2460 atggaacaac tatcctctca attctaagta ctggcctgtg ttgttcagaa agcttgatag 2520 ctgaatcaag cataatgcag tgcaccaccg aggatagctc aactgtatgc aaagctactg 2580 gaaccgtggt cctgaaattg ggaccaattg gctctgaatc atgcctgatc ctgaaaggtc 2640 ttagagacaa tgagaagcag ttcatatcca taaagactat ttctagtgag ttgacttgca 2700 gagaaggaga gtcattctgg acctcattgt acaccccagt atgtctaagc tctcggaggt 2760 gtcacttaat gggtgagtgc actggagata tatgcctcaa gtggaaaact aataaaacat 2820 ctgctgaatt tactgggaag actcatagtg aggtcattca tgagaacaag tgctttgaac 2880 agagtggagg aatgggttat ggatgtttta atgtcaaccc atcatgcttg atggttcact 2940 catatcttaa gccgatctac aaaaatgcat tcaaagtctt taggtgtgta gcttggaatc 3000 atagggtccg tcttggcata acaacacaca aaaggaattt tgaaatcact ctgatggcaa 3060 tgagtacaca gcagacagac tggggttcaa taggtttgat tctagactct gagggaatca 3120 ctggtacaaa ttcctattcc tttatgaaac atggattggg gagctttgct ataatagatg 3180 aaccttatgt gactgagcct cgaaaaggct atttgggcga agttagatgt cctacagaag 3240 agactgcagt gaaagcttct ccatcatgca aagtcgcgcc tgggttgata gagtaccagc 3300 cagagatgga tgtggtggaa tgcacgacaa acatgatgga tcctatggcg atcttcaaca 3360 ggggttcttt gcctcaagtc agagatggaa agacattcac tcagtccata gaaaagagct 3420 cagtccaagc gttaacaaca ggggaaattc atgctagtgt gaggcttgtt cttgatgaat 3480 atgaagttga gtacaaagtg gtcaataatg attgtgattc tacctttgtg aacatcacag 3540 ggtgctattc ttgtgacgag ggtgccagac tctgtgtaaa ggtaaaagct tctagtgatg 3600 taatatacca tttcactgac tcagacaaca gtatgaatgt cctctttaag gtttcttcca 3660 acatccagga ttattgtata gtcttacact tttcaaagcc tgttgtcaat gttgaaggca 3720 agtatgattg tggcaggagc aagaagccta tgctgattaa gggcactcta atcgccatgg 3780 cacctcatga tgacagagta acaaacgggg gttcatcaat tattataaat cccaaaggag 3840 gtggagttga tttcttaggg tggctatcag gattgagttc ttggtttggt ggtcctttaa 3900 aaactttctt aataattgca gggttcctca ttgtaggtat aataatagtc ataatcatca 3960 taattctggc acggcttggg attcagcagg cattggcaaa gaaattaaaa taactttact 4020 atagtgatta agctttatct ttcacatata attaaattta ttataaattg ggtttaatgg 4080 gtggggaact ggcagcggat gtgtttttag cacgtgcctg acaaacaaat gtagatctat 4140 agaagagcct gattgtgaag taaatatatt gtctgaggtg aattatttgt ttattactga 4200 ctagcaccgg tctttgtgt 4219 //