ID JF920133; SV 1; linear; genomic RNA; STD; VRL; 6317 BP. XX AC JF920133; XX DT 31-MAY-2013 (Rel. 116, Created) DT 31-MAY-2013 (Rel. 116, Last updated, Version 1) XX DE Punique virus strain PI-B4-2008 polymerase gene, complete cds. XX KW . XX OS Punique virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Ellioviricetes; OC Bunyavirales; Phenuiviridae; Phlebovirus. XX RN [1] RP 1-6317 RA Palacios G., Savji N., Shah A., Lipkin W.I.; RT "Genomic and phylogenetic characterization of Naples serogroup RT phleboviruses"; RL Unpublished. XX RN [2] RP 1-6317 RA Palacios G., Savji N., Shah A., Lipkin W.I.; RT ; RL Submitted (05-MAY-2011) to the INSDC. RL Center for Infection and Immunity, Columbia University, 772 W 168th Street, RL 17th Floor, New York, NY 10032, USA XX DR MD5; ad2f6e0e96ea2e4a63441df02e9cc4e1. DR EuropePMC; PMC3957954; 24390329. DR EuropePMC; PMC4236749; 25398483. XX FH Key Location/Qualifiers FH FT source 1..6317 FT /organism="Punique virus" FT /segment="L" FT /host="Phlebotomus sp." FT /strain="PI-B4-2008" FT /mol_type="genomic RNA" FT /country="Tunisia" FT /collection_date="2008" FT /note="serogroup: Naples" FT /db_xref="taxon:693015" FT CDS 19..6306 FT /codon_start=1 FT /product="polymerase" FT /db_xref="GOA:R4I371" FT /db_xref="InterPro:IPR007099" FT /db_xref="InterPro:IPR007322" FT /db_xref="InterPro:IPR022531" FT /db_xref="InterPro:IPR029124" FT /db_xref="UniProtKB/TrEMBL:R4I371" FT /protein_id="AFH88995.1" FT /translation="MERILRKQPQPEGSLTIHQLRRYESSIYDTPIPAYVVKHSSDGVA FT IDIATSDLAEGQSGSTIQPYETIPAQNLTLFKHDYTFGHLADTTDKKFVEVFGVMENRA FT DDADYQSPDMIIETESGHVYVVEFTTTMGDVNSAELAARNKIAKYEIACLNRSAIKPIS FT LYIIAVHFNGVVSNLELTDEEVNEIVFRFRLARDIFEELREINPSLFDSDETISRLDRE FT VNSIMSSIQIDWDTTESKFPSFKKELFENFIMEDVDNDYITRIVKKCTDDSIRGIEQDN FT FYSIDISNRERYEMNFRKAVGEINNKIAEMVSHDFLRDVDDHKSTVQFPAWVTLEGVPG FT KDLEPLKSLNVEGSHPMCKIWNKVCTNATIEKIERMHDDPIQELEYAMSGSTERSVERN FT KYHRTVLTLSQDEREYAAVLGVCGKKNSNLGAVKEARVRSKKGFSIDHDISKVTDYLFS FT DDLSCLQCEDGLYNPLSVDHPLRMLAMGLHQPTMIHSDDLMPETLECHSDILKTPLGSW FT LQMVSIIGAELSASVKQHVKPNQFIVKRLMNSGIFLLIKPTTSKGHIFVSLAVDKRLLA FT MEIDKSGVFKPSIDAGDLLVTDFVSFKLSKITNLCKASAVMEASICFWAECYGYNPWDF FT IKRTGERRLREAWFMMKLSLLTMLEDKAATEELQTMQRYVIMEGFVSLPEIPRPYKMLS FT KIPKVLRSELQVFLTQRLFFTIQRISKHPFVLHKMNSVIKWKDLFNPYSGDNIDELQIL FT ISCCYNGYFKNKEEETEPSALSAMYKKIIELEHLRPKSDDFLGYKDPEEPKMHEFSRSY FT LKLLCDHAKAKLKRQYGRGVLAQIESSIVREVSSITLERLATLKATSNFNDSWYVYKDV FT KDKNYTRDKLLVKMTKFAHRGKTLAIEMFDECMTRIEEKGCMEICLFKKQQHGGLREIY FT VMGADERIVQSVIEAIARAIGRFFDSDTLCNPANKMRIPETHGQRAKKRCGRSVWTCAT FT SDDARKWNQGHFVTKFALMLCQFTPEEWWPMIIRGCSMFTNKFMMMNLDFLRIIDSHKE FT LNIEDEFVTKLFKAYHGESVEPWIDQGRTYLKTSTGMMQGILHFTSSLLHSLHQEFIRT FT ASLQLFTQRMGSDAASRVVCDMMQGSDDSSMMISFPADNEKIRMRYKLVAAMCFRIKKS FT LGIYAGIYPSEKSTSNTDFVMEYNSEFFFHSQHVRPTIRWIAASCSLPEVETLVARQEE FT AANLLTSITEGGGSFSLAAMVQQSQCTIHYMLMGMGVSALFGEFTKAISKWMDPGLGFF FT LFDNPYSAGLSGFKYNLYRAIMNSNLKSVYSFFMKRVKGGSVRADGIISESCSVSPGGA FT IVMSSTLRWGSVEKFKRLRNRLNIPEDWREMINETPEILYRAPQTGTEIMLRIAEKVHS FT PGVVSSLSTGNAVCKVMASSVYFLSACIFEDAGNQEYKVMNSDKYSLLQKIIAFNQFEE FT ENDISQEDLLFLFPNLSEFEAFDSIIYDKGRFNVIPRASQREATQTRIVVFEHHSSARV FT APEKLVSDKWFGTRKSKIGSAGFKQEWDRLKVIVRWLRDTPEETLMASPFSNHVQIRNF FT FARMEGKPRVIKVTGAPVKKRSGMSKIAMAIRDNFCKTGFLQGLEDEVGHSRAMQVEKL FT KHYLFSVLMGPYTEDAKLEFIVKILKEEPQVILNYNDKRSRANTISLLQRFIKSDVGIA FT ALIEDMKAGIFGAFTKTQQFSQSSINNKYYGKGIWKGVIDGYQIQIEIDGKEGMPTYLS FT SITVSNCSKPWVLTQSLKAWCEDMQVSNNTDLSKHNKNANYWMYGFKMYGSSYPYGCPI FT YIVRQDITNLGLLHDDDIDIKVRRNTINLFVRSHDKRPRDLHILSYTPSDSDISSISSK FT HIMEDEYFVYKGLFSVEPTRSWMLCQSLPWNFVRPVVHLASGKRAAPRQLDLTRLREII FT RLCTESSIRNKVGTVYSQVKPEKMIESEAIDMSDMFDMMIEEGMDDAFEDLADFLTVDE FT DPDYMAEVDFDEESLNLFGPAHYKELQSLTVLAHPLMDGFVTRLVTKLGRSKIRRLLEK FT NIITSDCRELAELLFLSLDRDPSQIKEELIQGDSPTEVTDDLLG" XX SQ Sequence 6317 BP; 2046 A; 1161 C; 1471 G; 1639 T; 0 other; acacaaagag gcccaaatat ggaaagaatc cttagaaaac aaccacaacc tgagggaagc 60 ttaacaatac atcagctgag gaggtatgag tcatcaatat atgacacacc tatacctgcc 120 tatgttgtta agcatagttc tgatggtgtg gcaattgaca tagcaacttc tgacttagct 180 gaaggtcaat ctgggtctac tattcagcca tatgaaacta tccctgccca aaatctgact 240 ctcttcaaac atgactacac atttggtcat ctggctgaca ctacagacaa aaagtttgtg 300 gaagtctttg gagttatgga aaatcgtgct gatgatgcag actatcagtc accggacatg 360 ataattgaga ctgagtcagg ccatgtgtat gttgttgagt tcactaccac aatgggagat 420 gtgaactcag cagagcttgc tgctaggaat aagatagcca agtatgagat agcatgcttg 480 aaccgatcag cgataaagcc catatcacta tacattatag ctgtccactt taacggggtg 540 gtttcaaatc ttgaattgac tgatgaagaa gtcaatgaga ttgtcttcag gttcagacta 600 gcacgagaca tttttgaaga gcttagagag ataaatccaa gcttgtttga ctcagatgag 660 acaataagca gattagacag ggaggtgaac agcataatgt catcgatcca gattgactgg 720 gacacaacag aaagcaaatt tccaagcttc aagaaagagc tctttgagaa ttttatcatg 780 gaagatgtgg acaatgatta tataacaaga attgtgaaga agtgcactga tgattctatc 840 agaggaatag aacaagacaa tttctactca attgatatca gcaacagaga aagatatgaa 900 atgaatttca gaaaagcagt tggtgagatt aataataaga ttgcagaaat ggtgagtcat 960 gattttctaa gagacgtgga tgatcacaag tcaactgtgc agtttccggc ctgggtgacc 1020 ctagaaggag taccggggaa ggacttagaa cctctaaagt ccttgaatgt ggaaggaagt 1080 cacccaatgt gtaagatttg gaacaaggtc tgcacaaatg ccacaattga aaagattgag 1140 agaatgcatg atgacccgat tcaagagtta gagtatgcaa tgtcaggcag cactgagaga 1200 tctgtggaga ggaacaagta tcatagaact gttctgaccc tcagtcaaga tgagagggag 1260 tatgcagctg tgctaggtgt ctgtggcaaa aagaattcaa atctgggggc agtaaaagag 1320 gccagggtta ggagtaagaa gggcttctcg attgatcatg atattagcaa ggtcactgat 1380 tacttgtttt ctgatgacct atcatgcctt cagtgcgagg atggactata caaccccttg 1440 agtgttgatc atcccttgcg gatgctggct atgggtctac accagccaac aatgatccac 1500 tctgatgacc taatgcctga aaccttagag tgccattcag atattctcaa gacacctctt 1560 ggtagctggc tgcaaatggt ctcaataatt ggtgcagagt tgtcagcatc agttaaacaa 1620 catgtgaagc ctaatcagtt tattgtcaag agattgatga attcagggat tttcttgctc 1680 atcaagccca cgacttccaa gggccatatc tttgtttctc tggctgttga taagaggctt 1740 cttgcaatgg aaatagacaa gtcaggagtg ttcaagccta gcatagatgc cggagattta 1800 ttagtcactg attttgtgtc attcaaactg agtaagataa ccaatctgtg caaggcttca 1860 gctgtaatgg aagcctccat ttgcttttgg gctgaatgct acggttacaa cccatgggat 1920 ttcataaaga ggacaggtga gagaaggctg agagaggcct ggttcatgat gaagctttct 1980 cttctaacta tgctagaaga taaagcagca actgaggaac tccaaaccat gcagaggtat 2040 gttattatgg agggatttgt ttctcttcca gagataccta gaccatacaa gatgctgtct 2100 aagattccaa aggtcctgcg atccgagctg caggttttcc tcactcagag attattcttc 2160 actatacaaa gaatatcaaa gcacccattt gtcttgcaca agatgaacag tgttattaag 2220 tggaaagatc tcttcaatcc atactctggt gacaacatag atgagcttca gatactaata 2280 agctgctgct acaatggata cttcaaaaac aaagaagagg aaacagaacc atcagcattg 2340 tcagcaatgt ataagaaaat cattgaactt gagcacttaa ggccaaaaag cgatgacttt 2400 ctgggataca aggatccaga agagcccaag atgcatgaat tcagcagaag ttacttaaaa 2460 ctgctctgtg atcatgcaaa agccaagcta aagagacagt atggacgagg tgtactggct 2520 cagattgaga gcagtattgt tagagaggtg tcttctataa ctcttgagag actagccact 2580 ctaaaagcca ccagcaattt taatgattca tggtacgtgt acaaagatgt taaggacaaa 2640 aattatacca gagacaaact attagtgaag atgacaaagt ttgctcatag aggcaaaact 2700 ttggcaattg agatgtttga tgagtgtatg accagaatag aagaaaaggg ctgcatggag 2760 atctgcttgt ttaagaaaca gcagcacgga ggactacggg agatctatgt tatgggagca 2820 gatgagagaa tagttcagtc tgtaatagaa gctattgcca gggccatcgg gagattcttt 2880 gactctgaca cactatgtaa tcctgccaac aagatgagga ttccagagac tcatggtcag 2940 agagcaaaga agagatgtgg aagatctgtt tggacatgtg caacatctga tgatgcaaga 3000 aagtggaacc agggtcactt tgtcactaag tttgcactta tgttatgcca gttcacacca 3060 gaggaatggt ggccaatgat catcagagga tgctcaatgt tcactaataa gttcatgatg 3120 atgaatctgg acttcttaag gattatagac agccacaagg agctaaatat agaagatgaa 3180 tttgtcacta aactttttaa ggcgtatcat ggagagtcag tggagccatg gattgatcag 3240 gggagaacat atctgaagac aagcacaggc atgatgcaag gaatactaca ttttacctct 3300 tcattactac actctcttca tcaggaattc ataaggacag catctcttca attatttacc 3360 caaagaatgg gctcagacgc agcatccagg gtagtctgtg acatgatgca gggctcagat 3420 gacagtagca tgatgataag ctttccagca gacaatgaaa agataagaat gagatataag 3480 cttgttgctg caatgtgttt caggataaag aagtcgcttg gaatctatgc tggtatctat 3540 ccgtcagaga aatcaacatc aaacaccgac tttgtgatgg aatataactc agaattcttc 3600 tttcattctc agcatgtgag accaaccatc agatggattg cagcttcctg ttctctacct 3660 gaggtggaga ctttggttgc tagacaggag gaagcagcaa acctactaac ctctataaca 3720 gaaggaggtg gctccttttc actagcagca atggtgcagc aaagccagtg cacaattcat 3780 tacatgctaa tgggaatggg tgtcagtgct ctgtttggtg agttcacaaa ggcaatctca 3840 aaatggatgg atcctggact aggattcttc ttgtttgata atccttactc tgctgggtta 3900 tctggcttca agtataacct atacagagcc atcatgaact caaatctcaa gtcagtatat 3960 tcattcttca tgaagcgtgt taaaggagga tcagttagag cagatggaat catcagtgaa 4020 tcatgtagtg tgagtccagg tggagcaatt gtgatgagct caactctgag atggggttct 4080 gttgaaaagt ttaagaggct aagaaacaga ctcaacatcc ctgaggattg gagagagatg 4140 attaatgaga ctccagaaat cctgtacaga gcaccccaaa ccggaacaga gataatgctt 4200 cgaattgcag aaaaagttca tagtcctgga gttgtctctt cattgagcac aggtaatgct 4260 gtctgtaagg tcatggcatc ttctgtttat ttcctctcag cctgcatatt tgaggatgca 4320 ggtaatcaag agtataaggt gatgaatagc gacaagtata gcctactgca aaagatcatt 4380 gccttcaacc agtttgagga agagaatgac ataagccaag aagacttatt gtttctgttt 4440 ccaaacttat cagaatttga agcctttgat tcaatcatat atgataaagg gagattcaat 4500 gttatcccca gagccagcca gagagaagcc acacagacta gaatagtcgt ttttgagcac 4560 cactcttcag cccgagtcgc tcctgagaag ctagttagtg ataagtggtt tggaacaagg 4620 aagagcaaaa taggctcagc aggattcaag caagaatggg atcggctcaa agtcattgtt 4680 agatggctaa gagatactcc agaagaaaca ctcatggctt ccccgttctc aaaccatgtg 4740 cagatcagga atttctttgc caggatggaa ggcaaaccca gagtaatcaa ggtgacaggg 4800 gcacctgtca agaaacgttc aggcatgagc aagatagcca tggcaataag agacaacttc 4860 tgcaagaccg ggttcttgca aggattagaa gatgaagttg gtcatagtag agctatgcag 4920 gttgaaaagc tgaagcacta tctattctct gtgctaatgg gaccttacac agaggatgct 4980 aagttggaat tcatagtgaa gattctaaaa gaggaacctc aagtaattct gaattacaat 5040 gataagaggt ctagagcaaa cacaataagc ctgctacaaa gattcatcaa gagtgatgtg 5100 gggatagcag cccttattga agacatgaag gctgggatct ttggggcatt cactaagact 5160 cagcagttca gtcaatcatc aatcaataat aaatactatg gaaagggtat atggaagggt 5220 gtgattgatg gctatcagat tcaaattgag atagatggga aggaagggat gccaacctac 5280 ttgagctcca taacagtttc caactgctct aagccatggg ttcttaccca aagtctgaaa 5340 gcatggtgtg aggacatgca agttagcaac aacacagatc tatcaaaaca taataaaaac 5400 gcaaactact ggatgtatgg attcaagatg tatggctcat catacccata tgggtgtcct 5460 atatacatcg tgagacaaga tattactaat cttgggcttt tacatgatga tgatattgac 5520 atcaaggtga ggagaaacac aatcaacctt ttcgtgagaa gccatgacaa aaggcctcgg 5580 gacctgcaca tactgtctta cacaccatca gactcagaca tcagctcaat aagttcgaag 5640 cacatcatgg aagatgagta ttttgtctac aaaggattat tctctgtgga gcctaccaga 5700 tcatggatgc tatgtcaatc actaccttgg aactttgtga gacctgttgt tcatcttgct 5760 tcagggaaaa gggctgctcc ccgtcagctc gatctgacaa gattacgaga gattataaga 5820 ttgtgcacag aatcatcaat cagaaacaaa gttggcacag tctacagcca agtcaagcca 5880 gagaagatga tagaatcaga ggctatagac atgagtgaca tgtttgacat gatgatagaa 5940 gaggggatgg atgatgcatt tgaagatctt gctgacttcc taacagttga tgaagaccct 6000 gactatatgg cggaagttga ctttgatgaa gagagcctga atctttttgg gcctgcgcat 6060 tacaaagaat tgcagagtct tacagttttg gctcacccat taatggatgg atttgtaact 6120 cgattagtga caaagttagg aagatccaaa atcagaagac tgcttgagaa gaatataata 6180 acatcagatt gtagagaatt ggctgagtta ttatttttat ctctagatcg agatccatca 6240 caaataaaag aagaattgat acagggagac agtcctacag aggttactga cgacctactt 6300 gggtagtcat tttcgta 6317 //