ID JF919734; SV 1; linear; genomic DNA; STD; VRL; 2780 BP. XX AC JF919734; XX DT 01-JUN-2012 (Rel. 113, Created) DT 12-DEC-2012 (Rel. 115, Last updated, Version 2) XX DE Tomato leaf curl Sudan virus isolate Had:tob40:89, complete genome. XX KW . XX OS Tomato leaf curl Sudan virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2780 RX DOI; 10.1016/j.virusres.2012.07.014. RX PUBMED; 22841489. RA Idris A.M., Abdullah N.M., Brown J.K.; RT "Leaf curl diseases of two solanaceous species in Southwest Arabia are RT caused by a monopartite begomovirus evolutionarily most closely related to RT a species from the Nile Basin and unique suite of betasatellites"; RL Virus Res. 169(1):296-300(2012). XX RN [2] RP 1-2780 RA Idris A.M., Brown J.K.; RT ; RL Submitted (06-MAY-2011) to the INSDC. RL Plant Sciences, University of Arizona, Tucson, AZ 85721, USA XX DR MD5; 55bc5a86fd7268dd7d7c05cc239f56f6. XX FH Key Location/Qualifiers FH FT source 1..2780 FT /organism="Tomato leaf curl Sudan virus" FT /host="tobacco" FT /isolate="Had:tob40:89" FT /mol_type="genomic DNA" FT /country="Yemen" FT /collection_date="1989" FT /db_xref="taxon:270146" FT gene 150..500 FT /gene="V2" FT CDS 150..500 FT /codon_start=1 FT /gene="V2" FT /product="precoat protein" FT /db_xref="GOA:I3QBE3" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:I3QBE3" FT /protein_id="AFI56622.1" FT /translation="MWDPLLNEFPESVHGFRCMQAIKYLQAVEQTYEPNTLGHDLIRDL FT ISVIRARDYVEASRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQASNMDVPAHV FT PKAQNIQNVSKP" FT gene 310..1083 FT /gene="V1" FT CDS 310..1083 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:I3QBD8" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:I3QBD8" FT /protein_id="AFI56623.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAAPIVQGTNRRRTW FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSFDKRHDLKHTGEVLCVSDVTRGNGLTH FT RVGKRFCIKSIYIVGKVWMDENIKVKNHTNTCMFWLVRDRRPVTTPYGFGELFNMYDNE FT PSTATIKNDLRDRCQVLKRFTASLSGGQYASKEQCVIRRFYKIYNHIVYNHQEQGKYEN FT HTENALLLYMACTHASNPVYATLKIRVYFYDSISN" FT gene complement(1080..1484) FT /gene="C3" FT CDS complement(1080..1484) FT /codon_start=1 FT /gene="C3" FT /product="replication enhancer protein" FT /note="REp" FT /db_xref="GOA:I3QBE5" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:I3QBE5" FT /protein_id="AFI56624.1" FT /translation="MDSRTGELITAHQAKNGVFIWEINNPLYFKITNHDKRPFNMNKDI FT ISIQIRFNHNIRKELGIHKCFLNFRIWTNLQPQTGHFLRVFRYQVLRYLDNIGVISINN FT VIRAVDHVLYNVIAKTIDVTEHHDIKYKFY" FT gene complement(1225..1632) FT /gene="C2" FT CDS complement(1225..1632) FT /codon_start=1 FT /gene="C2" FT /product="transcriptional activator protein" FT /note="TrAP" FT /db_xref="GOA:I3QBE6" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:I3QBE6" FT /protein_id="AFI56625.1" FT /translation="MQHSSPSTSRCSQIPIKVQHKLAKKKPVRRRRVDLDCGCSYYIHI FT NCINHGFTHRGTHHCSSSKEWRFYLGDKQSPLFQDHQPRQEAIQHEQRHNFNTNPIQSQ FT HQEGVGDSQMFSQLPNLDELTASDWSFLKSI" FT gene complement(1541..2620) FT /gene="C1" FT CDS complement(1541..2620) FT /codon_start=1 FT /gene="C1" FT /product="replication associated protein" FT /note="Rep" FT /db_xref="GOA:I3QBE7" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:I3QBE7" FT /protein_id="AFI56626.1" FT /translation="MAPPKRFQINCKNYFLTYPQCSLTKEEALSQLKNINTPTNKKYIK FT VCRELHENGEPHLHVLIQFEGKFKCQNQRFFDLVSPSRAAHFHPNIQGAKSSSDVKSYI FT DKDGDTLEWGEFQIDGRSARGGQQTANDAAAEALNTGSASAALQIIREKLPKDFIFQYH FT NLNNNLDRIFQEPPAPYISPFLSSSFNQVPEELEVWVSENVMDPAARPWRPNSIVIEGD FT SRTGKTVWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPSIFLCNPGPTSSYREYLDEEKNISXKNWTLKNATFVTLNEPL FT FSNTNQGPTQASQEETSQA" FT gene complement(2166..2463) FT /gene="C4" FT CDS complement(2206..2463) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:I3QBE8" FT /protein_id="AFI56627.1" FT /translation="MGSHISMCLYSSKANSSAKISDSSTWYPQAGQHISIQTFRELNQV FT PTSSPTSTRTEILSNGVSFRSMDDLLEEVNRQLMMQQQRR" XX SQ Sequence 2780 BP; 740 A; 554 C; 604 G; 881 T; 1 other; accggatggc cgcgcccctc cttttatgtg gtccccacca cgtgggtccc acacacgtcg 60 ctgtcaacca atcaaattgc agcctgaaac gttaattaat tatccttttg tctttatata 120 cttggtcccc aagtagtttg tcttgcaaga tgtgggaccc acttctgaat gaatttccgg 180 aatctgttca cggatttcgt tgtatgcaag ccataaaata tttgcaggcc gttgagcaaa 240 catacgagcc caatactttg ggccacgatt taattaggga tcttatatct gttataaggg 300 cccgtgacta tgtcgaagcg tcccggcgat ataatcattt ccacgcccgt ctcgaaggtt 360 cgccgaaggc tgaacttcga cagcccatac agcagccgtg ctgctgcccc cattgtccaa 420 ggcacaaaca ggcgtcgaac atggacgtac cggcccatgt accgaaagcc cagaatatac 480 agaatgtatc gaagccctga tgttccccgt ggatgtgaag gcccatgtaa ggtccaatcg 540 tttgacaagc gccatgattt gaagcatacg ggtgaggtat tgtgtgtttc agatgtaaca 600 cgtggtaatg gccttactca tcgtgttggg aaacgttttt gcatcaagtc tatttacatt 660 gttggcaaag tgtggatgga tgagaacatt aaggtgaaga atcatactaa cacttgtatg 720 ttctggcttg ttcgggatcg tcgtccagtt accactccct atggatttgg agaattgttc 780 aacatgtatg ataatgagcc atctactgcg actattaaga atgatctgcg ggatcgttgt 840 caggttctta agaggttcac tgctagcctg agtggtggtc aatatgcgtc caaagagcaa 900 tgtgtcatta ggcgatttta taagatttat aatcatattg tgtataatca tcaagagcag 960 gggaaatatg agaatcatac tgagaacgct ctattattgt atatggcatg tactcatgct 1020 tctaatccag tgtatgctac acttaaaata agggtgtact tctatgattc aatatcgaat 1080 taataaaatt tatattttat atcatgatgt tctgttacat ctattgtctt tgcaattaca 1140 ttatacaata catgatcaac tgctctaatt acattgttaa ttgaaattac accaatatta 1200 tctaaatatc taagaacttg atatctaaat actcttaaga aatgaccagt ctgaggctgt 1260 aagttcgtcc agattcggaa gttgagaaaa catttgtgaa tccccaactc cttcctgatg 1320 ttgtgattga atcggatttg tattgaaatt atgtctttgt tcatgttgaa tggcctcttg 1380 tcgtggttgg tgatcttgaa atagagggga ttgtttatct cccagataaa aacgccattc 1440 tttgcttgat gagcagtgat gagttcccct gtgcgtgaat ccatggttga tgcagttgat 1500 gtgtatatag tatgagcagc cgcagtctag gtccacccgc ctacgcctga ctggtttctt 1560 cttggctagc ttgtgttgga ccttgattgg tatttgagaa cagcggctcg ttgagggtga 1620 cgaatgttgc attcttgaga gtccaatttt tcanagatat atttttctcc tcatctagat 1680 actctctata agaggatgta ggacctggat tgcagaggaa gattgaggga attccgcctt 1740 taatttgaat gggcttcccg tactttgtat tgctttgcca gtccctttgg gcccccataa 1800 attctttgaa gtgctttaaa tagtgcgggt ctacgtcatc aatgacgttg taccacgcat 1860 cattactgta cacttttgga ctcaggtcca gatgtccgca taaataatta tgtgggccta 1920 gggaacgggc ccatactgtc ttgccggtcc tactgtcgcc ctcgatgaca atactattcg 1980 gcctccatgg ccgcgcagcg ggatccatca cattctcgga cacccagact tcaagttcct 2040 caggaacttg attaaaagaa gaagataaaa aaggagaaat ataaggagcc ggaggctcct 2100 gaaaaatcct atctaaatta ttatttaaat tatgatattg aaaaataaaa tctttaggga 2160 gtttctccct aattatttgt agtgctgcag atgcagaacc tgtatttaac gcctctgctg 2220 ctgcatcatt agctgtctgt tgacctcctc tagcagatcg tccatcgatc tgaaactcac 2280 cccattcgag agtatctccg tccttgtcga tgtaggactt gacgtcggaa cttgatttag 2340 ctccctgaat gtttggatgg aaatgtgctg ccctgcttgg ggataccagg tcgaagaatc 2400 gctgattttg gcacttgaat ttgccttcga actgtataag cacatggaga tgtggctccc 2460 cattctcgtg aagttctctg caaactttga tatatttttt atttgttggg gtatttatgt 2520 tttttaattg ggaaagtgcc tcttcttttg ttaaggagca ttgaggatat gtaaggaaat 2580 aatttttgca atttatttga aaacgcttgg gaggagccat atggtcaatg agtaccgatt 2640 gaccaagatt tcatttatcc cttgtatatc ggtactcaat atatagtgag taccaaatgg 2700 catattggta attatgtaaa ggtacattta ttttcaaaat ttaaaattga aattcataaa 2760 gcggccatcc gtataatatt 2780 //