ID JF919733; SV 1; linear; genomic DNA; STD; VRL; 2780 BP. XX AC JF919733; XX DT 01-JUN-2012 (Rel. 113, Created) DT 12-DEC-2012 (Rel. 115, Last updated, Version 2) XX DE Tomato leaf curl Sudan virus isolate Had:tob20:89, complete genome. XX KW . XX OS Tomato leaf curl Sudan virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2780 RX DOI; 10.1016/j.virusres.2012.07.014. RX PUBMED; 22841489. RA Idris A.M., Abdullah N.M., Brown J.K.; RT "Leaf curl diseases of two solanaceous species in Southwest Arabia are RT caused by a monopartite begomovirus evolutionarily most closely related to RT a species from the Nile Basin and unique suite of betasatellites"; RL Virus Res. 169(1):296-300(2012). XX RN [2] RP 1-2780 RA Idris A.M., Brown J.K.; RT ; RL Submitted (06-MAY-2011) to the INSDC. RL Plant Sciences, University of Arizona, Tucson, AZ 85721, USA XX DR MD5; cc8a299114bfeb0d6d9c05916e6ce131. DR EuropePMC; PMC5796946; 29430354. XX FH Key Location/Qualifiers FH FT source 1..2780 FT /organism="Tomato leaf curl Sudan virus" FT /host="tobacco" FT /isolate="Had:tob20:89" FT /mol_type="genomic DNA" FT /country="Yemen" FT /collection_date="1989" FT /db_xref="taxon:270146" FT gene 150..500 FT /gene="V2" FT CDS 150..500 FT /codon_start=1 FT /gene="V2" FT /product="precoat protein" FT /db_xref="GOA:I3QBD7" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:I3QBD7" FT /protein_id="AFI56616.1" FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQAVEQTYEPNTLGHDLIRDL FT ISVIRARDYVEASRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQASNMDVPAHV FT PKAQNIQNVSKP" FT gene 310..1083 FT /gene="V1" FT CDS 310..1083 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:I3QBD8" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:I3QBD8" FT /protein_id="AFI56617.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAAPIVQGTNRRRTW FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSFDKRHDLKHTGEVLCVSDVTRGNGLTH FT RVGKRFCIKSIYIVGKVWMDENIKVKNHTNTCMFWLVRDRRPVTTPYGFGELFNMYDNE FT PSTATIKNDLRDRCQVLKRFTASLSGGQYASKEQCVIRRFYKIYNHIVYNHQEQGKYEN FT HTENALLLYMACTHASNPVYATLKIRVYFYDSISN" FT gene complement(1080..1484) FT /gene="C3" FT CDS complement(1080..1484) FT /codon_start=1 FT /gene="C3" FT /product="replication enhancer protein" FT /note="REp" FT /db_xref="GOA:I3QBE0" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:I3QBE0" FT /protein_id="AFI56619.1" FT /translation="MDSRTGELITAPQAKNGVFIWEINNPLYFKITNHDNRPFNMNKDV FT ISIQIRFNHNIRKELEIHKCFLNFRIWTTLQPQTGHFLRVFRYQVLRYLHNIGVISINN FT VIRAVDHVLYNVIAKTIDVTEHHDIKYKFY" FT gene complement(1225..1632) FT /gene="C2" FT CDS complement(1225..1632) FT /codon_start=1 FT /gene="C2" FT /product="transcriptional activator protein" FT /note="TrAP" FT /db_xref="GOA:I3QBE1" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:I3QBE1" FT /protein_id="AFI56620.1" FT /translation="MQHSSPSTSRCSQIPIKVQHKLAKKKPVRRRRVDLDCGCSYYIHI FT NCINHGFTHRGTHHCSSSKEWRFYLGDKQSPLFQDHQPRQQAIQHEQRRNFDTNPIQSQ FT HQEGVGDSQMFSQLPNLDDLTASDWSFLKSI" FT gene complement(1541..2620) FT /gene="C1" FT CDS complement(1541..2620) FT /codon_start=1 FT /gene="C1" FT /product="replication associated protein" FT /note="Rep" FT /db_xref="GOA:I3QBD9" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:I3QBD9" FT /protein_id="AFI56618.1" FT /translation="MAPPKRFQINCKNYFLTYPQCSLTKEEALSQLKNINTPTNKKYIK FT VCRELHENGEPHLHVLIQFEGKFKCQNQRFFDLVSPARSAHFHPNIQGAKSSSDVKSYI FT DKDGDTIEWGEFQIDGRSARGGQQSANDAYAQALNTGSKSEALNVIKELAPKDFVLQFH FT NLNSNLDRIFQEPPAPYISPFLSSSFNQVPEELEVWVSENVMSSAARPWRPNSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPRVYSNDAWYNVIDDVDPHYSKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWAIKNATFVTLNEPL FT FSNTNQGPTQASQEETSQT" FT gene complement(2161..2463) FT /gene="C4" FT CDS complement(2173..2463) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:I3QBE2" FT /protein_id="AFI56621.1" FT /translation="MGSHISMCLYSSKANSSAKINDSSTWSPQPGQHISIQTFRELNPA FT LTSSPILTRTETPSNGVSFRSMDDPQEGDNNQPMMLTPRRLTLEVSRRLLM" XX SQ Sequence 2780 BP; 733 A; 549 C; 621 G; 877 T; 0 other; accggatggc cgcgcccctc cttttatgtg gtccccacca cgtggatccc acacacgtcg 60 ctgtcaacca atcaaactgc agcctgaaac gttaattaat tatccttttg tctttatata 120 cttggtcccc aagttttttg tcttgcaaga tgtgggaccc acttctgaat gaatttccgg 180 aatctgttca cggatttcgt tgtatgctag ccataaaata tttgcaggcc gttgagcaaa 240 catacgagcc caatactttg ggccacgatt taattaggga tcttatatct gttataaggg 300 cccgtgacta tgtcgaagcg tcccggcgat ataatcattt ccacgcccgt ctcgaaggtt 360 cgccgaaggc tgaacttcga cagcccatac agcagccgtg ctgctgcccc cattgtccaa 420 ggcacaaaca ggcgtcgaac atggacgtac cggcccatgt accgaaagcc cagaatatac 480 agaatgtatc gaagccctga tgttccccgt ggatgtgaag gcccatgtaa ggtccaatcg 540 tttgacaagc gccatgattt gaagcatacg ggtgaggtat tgtgtgtttc agatgtaaca 600 cgtggtaatg gccttactca tcgtgttggg aaacgttttt gtatcaagtc tatttacatt 660 gttggcaaag tgtggatgga tgagaacatt aaggtgaaga atcatactaa cacttgtatg 720 ttctggcttg ttcgggatcg tcgtccagtt accactccct atggatttgg agaattgttc 780 aacatgtatg ataatgagcc atctactgcg actattaaga atgatctgcg ggatcgttgt 840 caggttctta agaggttcac tgctagcctg agtggtggtc aatatgcgtc caaagagcaa 900 tgtgtcatta ggcgatttta taagatttat aatcatattg tgtataatca tcaagagcag 960 gggaaatatg agaatcatac tgagaacgct ctattattgt atatggcatg tactcatgct 1020 tctaatccag tgtatgctac acttaaaata agggtgtact tctatgattc aatatcgaat 1080 taataaaatt tatattttat atcatgatgt tctgttacat ctattgtctt tgcaattaca 1140 ttatacaata catgatcaac cgctctaatt acattgttaa tggaaattac accaatatta 1200 tgtaaatatc taagaacttg atatctaaat actcttaaga aatgaccagt ctgaggctgt 1260 aaggtcgtcc agattcggaa gttgagaaaa catttgtgaa tctccaactc cttcctgatg 1320 ttgtgattga atcggatttg tatcgaaatt acgtctttgt tcatgttgaa tggcctgttg 1380 tcgtggttgg tgatcttgaa atagagggga ttgtttatct cccagataaa aacgccattc 1440 tttgcttgag gagcagtgat gagttcccct gtgcgtgaat ccatggttga tgcagttgat 1500 gtggatatag tatgagcagc cgcagtctag gtccactcgc ctacgtctga ctggtttctt 1560 cttggctagc ttgtgttgga ccttgattgg tatttgagaa cagcggctcg ttgagggtga 1620 cgaatgttgc atttttgata gcccagtttt tcagagatat atttttctcc tcgtctagat 1680 actctctata agaggaggta ggacctggat tgcataggaa gattgtggga attccgcctt 1740 taatttgaat gggcttcccg tacttggtgt tgctttgcca gtccctttgg gcccccatga 1800 attctttaaa gtgctttgaa tagtgcgggt ctacgtcatc aatgacgttg taccacgcat 1860 cattgctgta cactcttgga cttaggtcca ggtgtccaca taaataatta tgtgggccta 1920 gggatcgggc ccacattgtc ttgccggtcc tactgtcgcc ctcgatgaca atactattgg 1980 gtctccatgg ccgcgcagcg gaagacatga cgttctcgga cacccagact tcaagttcct 2040 cgggaacttg attaaaagaa gaagataaaa aaggagaaat ataaggagcc ggtggctcct 2100 gaaaaatcct atctaaatta ctatttaaat tatgaaattg caaaacaaaa tctttaggag 2160 ctaattcttt aattacatta agagcctccg acttacttcc agtgttaagc gcctgggcgt 2220 aagcatcatt ggctgattgt tgtccccctc ttgcggatcg tccatcgatc tgaaactcac 2280 cccattcgat ggtgtctccg tccttgtcaa tataggactt gacgtcagag ctggatttag 2340 ctccctgaat gtttggatgg aaatgtgctg acctggctgg ggagaccagg tcgaagaatc 2400 gttgattttg gcacttgaat ttgccttcga actgtataag cacatggaga tgtggctccc 2460 cattctcgtg aagttctctg caaactttga tatatttttt atttgttggg gtatttatgt 2520 tttttaattg ggaaagtgcc tcttcttttg ttaaggagca ttgaggatat gtaaggaaat 2580 aatttttgca atttatttga aaacgcttgg gaggagccat atggtcaatg agtaccgatt 2640 gaccaagatt tcatttatcc cttgtatatc ggtactcaat atatagtgag taccaaatgg 2700 catattggta attatgtaaa ggtacattta ttttcaaaat ttaaaattga aattcataaa 2760 gcggccatcc gtataatatt 2780 //