Dbfetch
ID JF919730; SV 1; linear; genomic DNA; STD; VRL; 2780 BP. XX AC JF919730; XX DT 01-JUN-2012 (Rel. 113, Created) DT 12-DEC-2012 (Rel. 115, Last updated, Version 2) XX DE Tomato leaf curl Sudan virus isolate Tih:tom12:05, complete genome. XX KW . XX OS Tomato leaf curl Sudan virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2780 RX DOI; 10.1016/j.virusres.2012.07.014. RX PUBMED; 22841489. RA Idris A.M., Abdullah N.M., Brown J.K.; RT "Leaf curl diseases of two solanaceous species in Southwest Arabia are RT caused by a monopartite begomovirus evolutionarily most closely related to RT a species from the Nile Basin and unique suite of betasatellites"; RL Virus Res. 169(1):296-300(2012). XX RN [2] RP 1-2780 RA Idris A.M., Brown J.K.; RT ; RL Submitted (06-MAY-2011) to the INSDC. RL Plant Sciences, University of Arizona, Tucson, AZ 85721, USA XX DR MD5; d2b8317537067fd9a94693fad3fe1ee0. XX FH Key Location/Qualifiers FH FT source 1..2780 FT /organism="Tomato leaf curl Sudan virus" FT /host="tomato" FT /isolate="Tih:tom12:05" FT /mol_type="genomic DNA" FT /country="Yemen" FT /collection_date="2005" FT /db_xref="taxon:270146" FT gene 150..500 FT /gene="V2" FT CDS 150..500 FT /codon_start=1 FT /gene="V2" FT /product="precoat protein" FT /db_xref="GOA:A9P494" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:A9P494" FT /protein_id="AFI56598.1" FT /translation="MWDPLINEFPESVHGFRCMLAIKYLQAVEQTYEPNTLGHDLIRDL FT ISVIRARDYVEASRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQASIMDVQAHV FT PKAQNIQNVSNP" FT gene 310..1083 FT /gene="V1" FT CDS 310..1083 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:A9P495" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:A9P495" FT /protein_id="AFI56600.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAAPIVQGTNKRRSW FT TYRPMYRKPKIYRMYRTPDVPRGCEGPCKVQSFDKRHDLKHTGEVLCVSDVTRGNGLTH FT RVGKRFCIKSIYIVGKVWMDENIKVKNHTNTCMFWLVRDRRPVTTPYGFGELFNMYDNE FT PSTATIKNDLRDRCQVLKRFTASLSGGQYASKEQCVIRRFYKVYNHIVYNHQEQGKYEN FT HTENALLLYMACTHASNPVYATLKIRVYFYDSISN" FT gene complement(1080..1484) FT /gene="C3" FT CDS complement(1080..1484) FT /codon_start=1 FT /gene="C3" FT /product="replication enhancer protein" FT /note="REp" FT /db_xref="GOA:A9P496" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:A9P496" FT /protein_id="AFI56601.1" FT /translation="MDSRTGEPITAHQAQSGVFIWEIKNPLYFKITDHSQRPFLMNHDI FT ISMQIRFNHNIRKELGIHKCFLNFQIWTNLQPQTGRFLRVVRYQVLKYLDNLGVISINN FT VIRAVHHVLYNVIAKTIDVTENHDIKYKIY" FT gene complement(1225..1632) FT /gene="C2" FT CDS complement(1225..1632) FT /codon_start=1 FT /gene="C2" FT /product="transcriptional activator protein" FT /note="TrAP" FT /db_xref="GOA:A9P497" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:A9P497" FT /protein_id="AFI56602.1" FT /translation="MRHSSPSPSRCSQVPIKVQHRTAKTKTVRRKRIDLNCGCSYYLHL FT NCINHGFTHRGTHHCSSSPEWRFYLGDKKSPVFQDNRPQSEAISNEPRHHFNANKIQSQ FT HQEGTGDSQMFSELPNLDELTASDWSFLKSS" FT gene complement(1541..2620) FT /gene="C1" FT CDS complement(1541..2620) FT /codon_start=1 FT /gene="C1" FT /product="replication associated protein" FT /note="Rep" FT /db_xref="GOA:I3QBC0" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:I3QBC0" FT /protein_id="AFI56599.1" FT /translation="MAPPKRFQINCKNYFLTYPQCSLTKEEALSQLKNINTPTNKKYIK FT VCRELHENGEPHLHVLIQFEGKFKCQNQRFFDLVSPSRAAHFHPNIQGAKSSSDVKSYI FT DKDGDTLDWGEFQIDGRSARGGQQSANDAYAAAINSGSKSEALRVLRELAPRDYILQFH FT NLNSNLDRIFQEPPAPYISPFLSSSFNQVPEELEVWVSENVMPSAARPWRPNSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNNAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKNIQIKGGIPTIFLCNPGPTSSYREYLDEERNISLKNWALKNATFVTLSEPL FT FSSANQGPTPNGEDEDSQT" FT gene complement(2161..2463) FT /gene="C4" FT CDS complement(2161..2463) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:I3QBA6" FT /protein_id="AFI56603.1" FT /translation="MGSHISMCLYSSKANSSAKISDSSTWYPQAGQHISIQTFRELNQV FT PTSSPTSIRTETLSTGESFRSMEGLQEGVNNLQTMLTPQQLTQAVSQRLLEYLGN" XX SQ Sequence 2780 BP; 739 A; 552 C; 602 G; 887 T; 0 other; accggatggc cgcgcccctg cttttatgtg gtccccatca cgtgggttcc acacatgtcg 60 ctatcatcca atgaaattca agcctgaaac gttaattaat tgtccttttg tctttatata 120 cttggtcccc aagtagtttc tcttgcaata tgtgggaccc tctgattaac gagtttcctg 180 aatcagttca cggatttcgt tgtatgctag ccataaaata tttgcaggcc gttgagcaaa 240 catacgagcc caatactctg ggccacgatt taattaggga tcttatttct gttataaggg 300 cccgtgacta tgtcgaagcg tcccggcgat ataatcattt ccacgcccgt ctcgaaggtt 360 cgccgaaggc tgaacttcga cagcccatac agcagccgtg ctgctgcccc cattgtccaa 420 ggcacaaaca agcgtcgatc atggacgtac aggcccatgt accgaaagcc caaaatatac 480 agaatgtatc gaacccctga tgttccccgt ggatgtgaag gcccttgtaa ggtccaatcg 540 tttgacaagc gccatgattt gaagcatacg ggtgaggtat tgtgtgtttc agatgtaaca 600 cgtggtaatg gccttactca tcgtgttggg aaacgttttt gtatcaagtc tatttacatt 660 gtgggcaaag tgtggatgga tgagaacatt aaggttaaga atcatactaa cacttgtatg 720 ttctggcttg ttcgggatcg tcgtccagtt accactccat atggatttgg ggagttgttt 780 aatatgtatg ataatgagcc atctacagcg actattaaga atgatttgcg ggatcgttgt 840 caggttctca agaggtttac tgctagtctg agtggtggtc aatatgcctc taaagagcaa 900 tgtgtgatta ggcgatttta taaggtttat aatcatattg tgtataacca tcaagagcaa 960 gggaagtatg agaatcatac tgagaacgct ctattattgt atatggcatg tactcatgct 1020 tctaatccag tgtatgctac acttaaaata agggtgtatt tctatgattc aatatcaaat 1080 taataaattt tatattttat atcatgattt tctgttacat ctattgtctt tgcaattaca 1140 ttatacaata catgatgaac tgctctaatt acattgttaa tggaaattac acccaaatta 1200 tctaaatatt taagaacctg atacctaact actcttaaga aacgaccagt ctgaggctgt 1260 aagttcgtcc agatttggaa gttcagaaaa catttgtgaa tccccagttc cttcctgatg 1320 ttgtgattga atcttatttg cattgaaatg atgtcgtggt tcattagaaa tggcctctga 1380 ctgtggtctg ttatcttgaa atacagggga ttttttatct cccagataaa aacgccactc 1440 tgggcttgat gagcagtgat gggttccccg gtgcgtgaat ccatggttga tgcagttgag 1500 gtggagatag tacgagcacc cgcaatttag gtcaatgcgc ttacgtctga ctgtcttcgt 1560 cttcgccgtt cggtgttgga ccttgattgg cacttgagaa caacggctcg gagagggtga 1620 cgaatgtcgc attctttaga gcccaatttt tcagagatat gtttctttct tcatccagat 1680 attctctata tgaggaggta ggtcctggat tgcataggaa gatagtggga attcctcctt 1740 taatttgaat gtttttcccg tattttgtgt tgctttgcca gtccctctgg gcccccatga 1800 attccttaaa gtgctttaaa taatgcgggt ctacgtcatc aatgacgttg taccatgcat 1860 tattactgta aacttttgga ctcaggtcca gatgtccaca caaataattg tgtggtccta 1920 gagacctggc ccacattgtt ttgccggttc tactatcacc ctcgatgaca atactattag 1980 gtctccatgg ccgcgcagcg gaaggcatga cgttctccga cacccaaacc tcaagttcct 2040 ctggaacttg attaaaagaa gaagatagaa aaggagaaat atacggagcc ggaggctcct 2100 gaaaaatcct atctaaatta ctatttaaat tatgaaattg taaaatataa tctctgggag 2160 ctaattccct aagtactcta agagcctctg acttactgcc tgagttaatt gctgcggcgt 2220 aagcatcgtt tgcagattgt tgaccccctc ttgcagacct tccatcgatc tgaaactctc 2280 cccagtcgag agtgtctccg tccttatcga tgtaggactt gacgtcggaa cttgatttag 2340 ctccctgaat gtttggatgg aaatgtgctg ccctgcttgg ggataccagg tcgaagaatc 2400 gctgattttg gcacttgaat ttgccttcga actgtataag cacatggaga tgtggctccc 2460 cattctcgtg aagttctctg caaactttga tatatttttt atttgttggg gtatttatgt 2520 tttttaattg ggaaagtgcc tcttcttttg ttaaggagca ttgaggatat gtaaggaaat 2580 aatttttgca atttatttga aaacgcttgg gaggagccat atggtcaatg agtaccgatt 2640 gaccaagatt tcatttatcc cttgtatatc ggtactcaat atatagtgag taccaaatgg 2700 catattggta attatgtaaa ggtacattta ttttcaaaat ttaaaattga aattcataaa 2760 gcggccatcc gtataatatt 2780 //