Dbfetch
ID JF909247; SV 1; circular; genomic DNA; STD; VRL; 2767 BP. XX AC JF909247; XX DT 21-JUN-2012 (Rel. 113, Created) DT 05-DEC-2012 (Rel. 115, Last updated, Version 2) XX DE East African cassava mosaic Kenya virus isolate DE Comoros:Mayotte:YT45E12:2008 segment DNA-B, complete sequence. XX KW . XX OS East African cassava mosaic Kenya virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RC Publication Status: Online-Only RP 1-2767 RX DOI; 10.1186/1471-2148-12-228. RX PUBMED; 23186303. RA De Bruyn A., Villemot J., Lefeuvre P., Villar E., Hoareau M., RA Harimalala M., Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B., RA Harkins G.W., Varsani A., Martin D.P., Lett J.M.; RT "East African cassava mosaic-like viruses from Africa to Indian ocean RT islands: molecular diversity, evolutionary history and geographical RT dissemination of a bipartite begomovirus"; RL BMC Evol. Biol. 12(1):228-228(2012). XX RN [2] RP 1-2767 RA Villemot J., Lefeuvre P., Villar E., Hoareau M., Abdoul-Karime A.L., RA Abdou-Chakour C., Reynaud B., Varsani A., Martin D.P., Lett J.-M.; RT ; RL Submitted (24-MAR-2011) to the INSDC. RL UMR PVBMT, CIRAD, 7, chemin de l'IRAT, Saint-Pierre, Reunion 97410, France XX DR MD5; 59f79efc4377e38294710be5df8e04c4. XX FH Key Location/Qualifiers FH FT source 1..2767 FT /organism="East African cassava mosaic Kenya virus" FT /segment="DNA-B" FT /host="Manihot esculenta (cassava)" FT /isolate="Comoros:Mayotte:YT45E12:2008" FT /mol_type="genomic DNA" FT /country="Mayotte" FT /lat_lon="12.79 S 45.13 E" FT /collection_date="2008" FT /db_xref="taxon:393599" FT gene 361..1137 FT /gene="BV1" FT CDS 361..1137 FT /codon_start=1 FT /gene="BV1" FT /product="nuclear shuttle protein" FT /db_xref="GOA:I6LZM2" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR001530" FT /db_xref="UniProtKB/TrEMBL:I6LZM2" FT /protein_id="AEG90627.1" FT /translation="MYSVNRRGYKTPYRSPYGARVTPYVYRKTSVKHTSKSRVPRKLAY FT ESPKSLYTRRSLEDIHNGASLKLPQQGDYTSYVTLPCRGIDGNGGRSVDHIKLLSLRVA FT GTVNVSQFGGDENMGERTTMRGIFFMACLVDKKPFVPEGVSILPTFNELFGEYESVYGM FT PRLKENVRHRYRVIGTSKLYITTDEDHIQKPFSLRRRLSGGKYPIWSSFKDVDNSSTGG FT NYKNINKNAILVSYVWVSLCRTTCDVYSQFVLNYVG" FT gene complement(1265..2188) FT /gene="BC1" FT CDS complement(1265..2188) FT /codon_start=1 FT /gene="BC1" FT /product="movement protein" FT /db_xref="GOA:I6LZM1" FT /db_xref="InterPro:IPR000211" FT /db_xref="UniProtKB/TrEMBL:I6LZM1" FT /protein_id="AEG90628.1" FT /translation="MDNQFTVTDNNYINSKRTEYALTNDAAPINLQFPSSFEQATMRLK FT GRCMKIDHIIIEYRNQVPFNATGSVIVEIRDNRVSLEDAAQAAFTFPIACNVDLHYFSS FT TYFSISEPSPWKIMYRVEDSNVIEGVKFASIKAKLRLSSAKHSTDIRFKPPTINILSKG FT YTKDCIDFWSVEKGEIRRRLLNPTPNAHSPRPITHRPITILPGETWATKSQLGLPRSSG FT PARLEHFRSQSMRMDPSTTPTDFDNDSTEYPYQKLHRLHTPELDPGDSVSQAPSESISR FT KDLETLLESTINKCLIKIKSDAPRQL" XX SQ Sequence 2767 BP; 772 A; 456 C; 739 G; 800 T; 0 other; accggatggc cgcgcccgaa aaaagcaagt ggatcccaca atggccccca cgcactaagt 60 aatgtcagcc aatcaagttc aagactggaa gactcggtag gtacgcatgg atgaataagt 120 gggccctacg gacgaaattt gacaggcaat tttattgcta tgtgtgtatt atattcttat 180 aggtgtgcta gtggccaatc taaagttatg ttatggggcc tatcataaaa atgcataata 240 taaggccgta tggacgtatt gatgatatta ttatttgcgg atatatgatc cgccacgtgt 300 ttacagtgta tagggatggt cctataaata tgttgcatgt ctcccgttct gtaatgcaag 360 atgtattctg ttaacagacg tgggtataag actccgtata ggagtccgta tggcgctcgt 420 gtaacaccat atgtttaccg taagacctct gttaagcata cgtctaaatc tcgtgtacct 480 cgaaagttgg cgtatgaatc gccaaaaagt ctatatacgc gacgctcatt ggaggatatc 540 cataacgggg cttccttgaa gttgcctcaa cagggggatt atacgtccta cgtgacactc 600 ccgtgtcgag gtattgatgg taatgggggt aggtctgttg atcatataaa gttattaagc 660 ttgagggttg ctgggaccgt caacgtcagt caattcggtg gtgatgagaa tatgggagag 720 agaacgacca tgaggggtat ttttttcatg gcttgtcttg ttgataagaa acctttcgtg 780 ccagaggggg tcagcatatt gccgacgttc aatgagttgt tcggggaata tgaatccgta 840 tatggcatgc ctaggttgaa ggaaaacgtc cgtcaccggt atcgcgttat tgggacgtcg 900 aaattatata taacgaccga tgaagatcac atccagaagc cttttagtct acgtcgaaga 960 ctaagtggag ggaaatatcc tatttggtcg tcgttcaagg atgtggataa tagtagtaca 1020 ggtggtaact ataaaaatat aaataagaac gctatactag tgagttatgt gtgggtatcg 1080 ctatgtcgga ccacgtgtga tgtgtattcg cagtttgtac ttaattacgt cggctgataa 1140 taaaacgaga gaagtgtgtt gacattaatg atgtttgaac taacgaaaca tgagatgaac 1200 atcaagtgga agcatataga atttattatg gtcttaacca aatatgatac atatgaagtg 1260 cgtattacaa ttgccttggt gcgtcggatt tgattttgat gagacacttg tttatggtac 1320 tctcaagcag tgtctcgagg tcctttctgg atatggattc ggatggggcc tgtgataccg 1380 agtcccctgg gtctaattct ggtgtgtgta atctgtgtag tttctgataa ggatattcgg 1440 tggagtcgtt gtcgaagtct gttggtgttg tcgatgggtc catcctcatg gactgtgaac 1500 gaaagtgttc cagccttgct gggcctgatg agcgtggtag cccaagctga gactttgtgg 1560 cccatgtttc accaggtagg atagtgatgg gcctgtgggt tatgggtcgt ggactatgag 1620 catttggagt gggatttagt aatcgccgtc gtatttctcc tttttccacg gaccagaagt 1680 ctatgcagtc ttttgtgtat cccttggata aaatgttaat tgttgggggt ttgaaacgta 1740 tgtccgtgga atgtttggcc gacgataatc tgagcttggc cttgatggag gcgaatttca 1800 cgccttctat gacgttggag tcttcgactc tgtacattat tttccaaggg gagggttcgg 1860 aaatcgaaaa ataggtagag gagaagtagt ggaggtctac gttgcaagct atcgggaaag 1920 tgaatgctgc ttgagctgcg tcttcaaggc tgacgcgatt gtctcggatt tctacaataa 1980 cagacccagt tgcgttaaat gggacctggt ttcggtattc aattatgatg tggtcgattt 2040 tcatacatcg gcctttgagt cgcatggtag cctgctcgaa ggagctgggg aactggagat 2100 tgattggtgc agcatcgttt gttaatgcgt actctgtgcg tttgctgttt atgtaattat 2160 tgtctgtgac ggtgaattgg ttgtccattc tatgaatgaa aaaaacaagg gttagtaaac 2220 ggagagaaga gatacataaa agtcagaaca aggtgtataa aatgtcttgt agacatggaa 2280 gcatatatgc agttgttata tataagaaca cactaaatca gaacaaggat catatatgtg 2340 taactggccg cgcagcggat tggaggtcag ataaatctgc taacaaagaa aaaagtcgaa 2400 tggggttatg tgatcgaaat tacttaccga atcaccgatg aaccagtctg gagggaattc 2460 ctgttccaat tcggaaaaaa caaagaaata aaagtagaac ttattgggat aaaaaaggaa 2520 atggagcaga tgttatgcgt tgtatcgtga aatgatatgc tatggggtgt ttatataggc 2580 gttaataagc gacacgtggt atagagagag aaagaagaga gaggcgagag caatcggggg 2640 acactcaaag tctatagcaa tcgggggaaa ggggggcaat ttatatgatg tcccccaaat 2700 ggcatttatg taaaatcctc attgaattta aagttcaaac gtggaaagcg gccatccgta 2760 taatatt 2767 //