Dbfetch
ID JF909197; SV 1; circular; genomic DNA; STD; VRL; 2798 BP. XX AC JF909197; XX DT 21-JUN-2012 (Rel. 113, Created) DT 05-DEC-2012 (Rel. 115, Last updated, Version 3) XX DE East African cassava mosaic Kenya virus isolate DE Comoros:Mayotte:YT64B02:2008 segment DNA-A, complete sequence. XX KW . XX OS East African cassava mosaic Kenya virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RC Publication Status: Online-Only RP 1-2798 RX DOI; 10.1186/1471-2148-12-228. RX PUBMED; 23186303. RA De Bruyn A., Villemot J., Lefeuvre P., Villar E., Hoareau M., RA Harimalala M., Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B., RA Harkins G.W., Varsani A., Martin D.P., Lett J.M.; RT "East African cassava mosaic-like viruses from Africa to Indian ocean RT islands: molecular diversity, evolutionary history and geographical RT dissemination of a bipartite begomovirus"; RL BMC Evol. Biol. 12(1):228-228(2012). XX RN [2] RP 1-2798 RA Villemot J., Lefeuvre P., Villar E., Hoareau M., Harimalala M., RA Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B., Varsani A., Martin D.P., RA Lett J.-M.; RT ; RL Submitted (24-MAR-2011) to the INSDC. RL UMR PVBMT, CIRAD, 7, chemin de l'IRAT, Saint-Pierre, Reunion 97410, France XX DR MD5; bd98261404735f5aabb6b1f57abaed1d. XX FH Key Location/Qualifiers FH FT source 1..2798 FT /organism="East African cassava mosaic Kenya virus" FT /segment="DNA-A" FT /host="Manihot esculenta (cassava)" FT /isolate="Comoros:Mayotte:YT64B02:2008" FT /mol_type="genomic DNA" FT /country="Mayotte" FT /lat_lon="12.78 S 45.23 E" FT /collection_date="2008" FT /db_xref="taxon:393599" FT gene 173..529 FT /gene="AV2" FT CDS 173..529 FT /codon_start=1 FT /gene="AV2" FT /product="movement protein" FT /db_xref="GOA:I6LZA9" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:I6LZA9" FT /protein_id="AEG90516.1" FT /translation="MWDPLLNDFPETVHGFRSMLAVKYLLHLEQEYDRGTVGAEYIRDL FT IGVLRCKSYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQAHVP FT EAEDVQNVSKPRCP" FT gene 333..995 FT /gene="AV1" FT CDS 333..995 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:I6LZA8" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:I6LZA8" FT /protein_id="AEG90515.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKIWA FT NRPMYRKPKMYRMYRSPDVPKGCEGPCKVQSYEQRDDVKHIGMVRCVSDVTRGSGITHR FT VGKRFCVKSIYILGKIWMDENIKKQNHTNHVMFFLVRDRRPYGPSPQDFGQVFNMFDNE FT PTTATVKNDLRDRYQVLRKFYATVVGGPSGMKEQALVKRVFRINNHVVYNHQEQAKV" FT gene complement(1104..1508) FT /gene="AC3" FT CDS complement(1104..1508) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer" FT /db_xref="GOA:I6LZB2" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:I6LZB2" FT /protein_id="AEG90519.1" FT /translation="MDSRTGELITAPQAKNGVFTWEITNPLYFDITNHETRPGNMNHDI FT ITLQIRFNHNLRKALAIHKCFLNFKVWTTLRPQTGRFLRVFRYQVLKYLDMIGVISINT FT VIQAVDHVMYDVLLNTLQVTEQHAIKFNLY" FT gene complement(1249..1656) FT /gene="AC2" FT CDS complement(1249..1656) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /db_xref="GOA:I6LZB1" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:I6LZB1" FT /protein_id="AEG90518.1" FT /translation="MPPSSPSTSHCSQVPIKVQHRTAKTRALRRRRVDLECGCSFYLHI FT DCINHGFSHRGTHHCASSKEWRFYLGNNKSPLFRHHQPRDEAREHEPRHHHTPDTFQPQ FT PPEGIGDSQVFSQLQGLDDLTASDWSFLKSI" FT gene complement(1565..2644) FT /gene="AC1" FT CDS complement(1565..2644) FT /codon_start=1 FT /gene="AC1" FT /product="replication associated protein" FT /db_xref="GOA:I6LZB0" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:I6LZB0" FT /protein_id="AEG90517.1" FT /translation="MPRAGRFSIKAKNYFLTYPKCSLSKEEALDQIRKLQTPTNKLFIK FT ICRELHENGEPHLHALIQFEGKYNCTNQRFFDLISPSRSAHFHPNIQGAKSSSDVKSYL FT DKDGDTIQWGEFQIDGRSARGGQQSANDAYAKALNSANKSEALNVIRELAPKDFVLQFH FT NLNSNLDRIFQEPLAPYVSPFLSSSFTNVPEELEAWVSENVMGSAARPWRPSSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFMDEEKNQSLKAWALKNATFVTLHEPL FT FSSADQSPTPHSEDQGPQT" FT gene complement(2197..2493) FT /gene="AC4" FT CDS complement(2197..2493) FT /codon_start=1 FT /gene="AC4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:I6LZ47" FT /protein_id="AEG90520.1" FT /translation="MKMGNLICMRSFSSRASTIVPTNDSSTSYPLPGQPISTQTFRALN FT QAPTSSPIWTRTETPSNGASFRSTDDLLAEDNNQPMTLTPRLLTPQISQRLLM" XX SQ Sequence 2798 BP; 713 A; 574 C; 736 G; 775 T; 0 other; accggatggc cgcgcccgaa aaagcagtgg accccaccgg atggccgcgc ccgttaaaga 60 aagtggtccc cgcgcacatg tttcggtcgt ccagtcatat ttacgcgtga aagtctagat 120 atttgttggt tgtctttata gacttcgtcg cgaagtagtg aagcgcgtca acatgtggga 180 tccattgttg aacgatttcc ctgaaaccgt gcacggtttc cgttctatgc ttgctgttaa 240 atacctgtta catctggaac aggaatacga tcgcggtact gtcggggctg agtatatacg 300 ggatctaata ggggttctac ggtgtaagag ttatgtcgaa gcgaccagga gatataataa 360 tctcaacacc cgtatccaag gtgcggagga ggctgaactt cgacagccca tacacgaacc 420 gtgttgttgc ccccactgtc cgcgtcacca gaagcaaaat atgggccaac aggcccatgt 480 accggaagcc gaagatgtac agaatgtatc gaagcccaga tgtccctaag ggctgtgaag 540 gcccatgtaa ggttcagtcg tatgaacaga gggatgatgt taagcacatt ggtatggtcc 600 gatgtgtcag tgatgttact cgtgggtcag gcatcaccca tagagtcggg aagaggtttt 660 gtgtgaagtc catatatata ttgggcaaga tctggatgga tgagaatatc aagaagcaaa 720 atcatacgaa ccatgttatg ttcttcctcg ttcgagatag aaggccttat ggtccgagcc 780 cgcaagattt tggacaagtg ttcaacatgt ttgataatga acctactacg gcaacggtga 840 agaatgatct gagggaccgg tatcaggtgt tacgaaaatt ctatgcgacc gtcgttggtg 900 gaccctccgg gatgaaggaa caagcgctgg tcaagagggt ttttaggatc aataatcatg 960 tagtgtataa tcatcaggaa caggccaaag tatgagaatc atacggagaa tgcgttgtta 1020 ttgtatatgg catgtacaca tgcctcaaat cctgtgtacg ctactctgaa aatacgcatc 1080 tatttctatg atgcagtgac aaattaataa aggttgaatt ttattgcatg ttgctccgta 1140 acttggagtg tgtttagtaa tacatcgtac ataacatgat caacagcttg tattacagtg 1200 ttaatggaaa taacgcctat catatctaaa tacttgagca cttgatatct aaatactctt 1260 aagaaacgac cagtctgagg ccgtaaggtc gtccagacct tgaagttgag aaaacacttg 1320 tgaatcgcca atgccttccg gaggttgtgg ttgaaacgta tctggagtgt gatgatgtcg 1380 tggttcatgt tccctggcct cgtctcgtgg ttggtgatgt cgaaatagag gggatttgtt 1440 atttcccagg taaaaacgcc attctttgct tgaggcgcag tgatgagttc ccctgtgcga 1500 gaatccatgg ttgatgcagt cgatatggag atagaacgag cagccacatt cgaggtctac 1560 gcgcctacgt ctgagggccc tggtcttcgc tgtgcggtgt tggactttga tcggcacttg 1620 agaacaatgg ctcgtggagg gtgacgaagg tggcattctt taaagcccag gctttaaggg 1680 actgattctt ttcctcgtcc ataaactctt tatatgatga tgttggtcct ggattgcaga 1740 ggaagatagt gggaatgccg cctttaattt gaattggctt tccgtacttt gtattgcttt 1800 gccagtccct ttgggccccc atgaattctt tgaagtgttt gaggtagtgg gggtcgacgt 1860 catcaatgac gttgtaccag gcgtcgttgc tgtagacctt tggactgaga tccaggtgtc 1920 cacacaagta gttgtgtggt cccagagagc gggcccacat cgtcttcccc gtcctactat 1980 cgccctcgat gacgatgcta ctcggtctcc atggccgcgc agcggaaccc atcacgttct 2040 cggaaaccca agcttcaagt tcctcaggaa cgttagtgaa agaagaagaa agaaagggag 2100 aaacataagg agccagaggc tcttgaaaaa tcctatctaa attgctattt aaattatgaa 2160 actgtaaaac aaaatctttt ggggctagtt cccgtattac attaagagcc tctgacttat 2220 ttgcggagtt aagagccttg gcgtaagcgt cattggctga ttgttgtcct ccgcgagcag 2280 atcgtccgtc gatctgaaac tcgccccatt ggatggtgtc tccgtccttg tccagatagg 2340 acttgacgtc ggagcttgat ttagcgccct gaatgtttgg gtggaaatgg gctgaccggg 2400 aaggggatat gaggtcgaag aatcgttggt tggtacaatt gtacttgccc tcgaactgaa 2460 tgagcgcatg cagatgaggt tccccatttt catgtagttc tctgcagatc ttgatgaaca 2520 atttatttgt gggggtttgg agtttccgga tctgatccaa tgcctcttct ttggacagag 2580 agcatttggg atatgttaag aaatagtttt ttgctttgat gctaaaacga ccagcccttg 2640 gcattttcgc tgtcgtatag ctatcggggg gcactcaaag tctgtagcaa tcgggggaat 2700 gggggggcaa tttatatgat gccccctaaa tggcatttat gtaatatccg cattgaattt 2760 gaatttcaaa cgtggaaagc ggccatccgt ataatatt 2798 //