ID JF909185; SV 1; circular; genomic DNA; STD; VRL; 2800 BP. XX AC JF909185; XX DT 21-JUN-2012 (Rel. 113, Created) DT 05-DEC-2012 (Rel. 115, Last updated, Version 3) XX DE East African cassava mosaic virus-Kenya isolate DE Comoros:Mayotte:YT44B01:2008 segment DNA-A, complete sequence. XX KW . XX OS East African cassava mosaic virus-Kenya OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RC Publication Status: Online-Only RP 1-2800 RX DOI; 10.1186/1471-2148-12-228. RX PUBMED; 23186303. RA De Bruyn A., Villemot J., Lefeuvre P., Villar E., Hoareau M., RA Harimalala M., Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B., RA Harkins G.W., Varsani A., Martin D.P., Lett J.M.; RT "East African cassava mosaic-like viruses from Africa to Indian ocean RT islands: molecular diversity, evolutionary history and geographical RT dissemination of a bipartite begomovirus"; RL BMC Evol. Biol. 12(1):228-228(2012). XX RN [2] RP 1-2800 RA Villemot J., Lefeuvre P., Villar E., Hoareau M., Harimalala M., RA Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B., Varsani A., Martin D.P., RA Lett J.-M.; RT ; RL Submitted (24-MAR-2011) to the INSDC. RL UMR PVBMT, CIRAD, 7, chemin de l'IRAT, Saint-Pierre, Reunion 97410, France XX DR MD5; 268339eb9dda790e524f1ac28047cbce. XX FH Key Location/Qualifiers FH FT source 1..2800 FT /organism="East African cassava mosaic virus-Kenya" FT /segment="DNA-A" FT /host="Manihot esculenta (cassava)" FT /isolate="Comoros:Mayotte:YT44B01:2008" FT /mol_type="genomic DNA" FT /country="Mayotte" FT /lat_lon="12.79 S 45.13 E" FT /collection_date="2008" FT /db_xref="taxon:1229189" FT gene 173..529 FT /gene="AV2" FT CDS 173..529 FT /codon_start=1 FT /gene="AV2" FT /product="movement protein" FT /db_xref="GOA:I6LZ37" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:I6LZ37" FT /protein_id="AEG90444.1" FT /translation="MWDPLLNDFPETVHGFRAMLAVKYLLHLEQEYDRGTVGAEYIRDL FT IGVLRCKSYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQAHVS FT EAEDVQNVSKPRCP" FT gene 333..1106 FT /gene="AV1" FT CDS 333..1106 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:I6LZ36" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:I6LZ36" FT /protein_id="AEG90443.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKIWA FT NRPMYRKPKMYRMCRSPDVPKGCEGPCKVQSYEQRDDVKHTGMVRCVSDVTRGSGITHR FT VGKRFCVKSIYILGKIGMDENIKKQNHTNHVMFYLVRDRRPYGPSPQDFGQVFNMLDNE FT PTTATVKNDLRDRYQVLRKFYATVIGGPSGMKEQALVKRCCRINNHVVYNSSEQVKYEN FT HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN" FT gene complement(1103..1507) FT /gene="AC3" FT CDS complement(1103..1507) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer" FT /db_xref="GOA:I6LZ40" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:I6LZ40" FT /protein_id="AEG90447.1" FT /translation="MDSRTGELITAPQAKNGVFTWEITNPLYFEITNHDKRPGTMNHDI FT ITLQIRFNHNLRKALAIHKCFLNFKVWTTLRPQTGLFLRVFRYQVLKYLDMLGVISINT FT VIRAVDHVLYAVLLNTLQVTEQHAIKFNIY" FT gene complement(1248..1655) FT /gene="AC2" FT CDS complement(1248..1655) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /db_xref="GOA:I6LZ39" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:I6LZ39" FT /protein_id="AEG90446.1" FT /translation="MPPSSPSTSHCSQVPIQVQHRTAKNRAIRRRRVDLECGCSFYLHI FT DCINHGFSHRGTHHCASSKEWRFYLGNNKSPLFRNHQPRQEARDHEPRHHHTPDTFQPQ FT PPEGIGDSQVFSQLQGLDDLTASDWSFLKSI" FT gene complement(1564..2643) FT /gene="AC1" FT CDS complement(1564..2643) FT /codon_start=1 FT /gene="AC1" FT /product="replication associated protein" FT /db_xref="GOA:I6LZ38" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:I6LZ38" FT /protein_id="AEG90445.1" FT /translation="MPRAGRFQINAKNYFITYPRCSLTKDEALSQLKALSYPTNIKFIR FT VCRELHQDGVPHLHVLIQFEGKFQCTNQRFFDLISPSRSTHFHPNIQGAKSSSDVKAYI FT EKGGDFLDDGIFQVDARSARGEGQHLAQVYADALNASSKSEALQIIKEKDPKSFFLQFH FT NISANADRIFQAPPQTYVSPFLSSSFTQVPEELEVWVSENICSPAARPWRPISIVLEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLEEEKNQSLKAWALKNATFVTLHEPL FT FSSAHPSPTPHSEEQGHQT" FT gene complement(2253..2486) FT /gene="AC4" FT CDS complement(2253..2486) FT /codon_start=1 FT /gene="AC4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:I6LZ41" FT /protein_id="AEG90448.1" FT /translation="MGCLISMFSSNSKASSNVQTRDSSISFPHPDQHISIRTFRELNHR FT PMSKLTLKREGTFLTMEFSKSMPEVQGARASI" XX SQ Sequence 2800 BP; 728 A; 556 C; 733 G; 783 T; 0 other; accggatggc cgcgcccgaa aaagcagatg accccaccag atggccgcgc ccgtgaaaga 60 acgtggtccc cgcgcacgtg gatcggtcgg ccagtcataa ttacgcgtga aagtctagat 120 atttgttgtt tgtctttata gtcttcgtcg cgaagtagtg aagcgcgtca acatgtggga 180 tccattattg aatgatttcc ctgaaaccgt tcacggcttc cgtgctatgc ttgctgttaa 240 atacctgtta catctggaac aggaatacga tcgcggtact gtcggggctg agtatatacg 300 ggatctaata ggggttctac ggtgtaagag ttatgtcgaa gcgaccagga gatataataa 360 tctcaacacc cgtatccaag gtgcggagga ggctgaactt cgacagccca tacacgaacc 420 gtgttgttgc ccccactgtc cgcgtcacca gaagcaaaat atgggccaac aggcccatgt 480 atcggaagcc gaagatgtac agaatgtgtc gaagcccaga tgtccctaag ggctgtgaag 540 gcccatgtaa ggttcagtcg tatgaacaga gggatgatgt taagcacact ggtatggtcc 600 gatgtgtcag tgatgttacg cgtgggtcag gcattaccca tagagtcggg aagaggtttt 660 gtgtgaagtc catatatata ttgggcaaga tcgggatgga tgagaatatc aagaagcaaa 720 atcatacgaa ccatgttatg ttctacctcg ttcgagatag aaggccttat ggtccgagtc 780 cgcaagattt tggacaagtg ttcaacatgt tggataatga acctaccact gcaactgtta 840 agaatgatct tagggaccgg tatcaggtgt tacgtaaatt ctatgcgact gttattggtg 900 gaccctccgg gatgaaggaa caagcgctgg ttaagaggtg ttgtaggatc aataatcatg 960 tagtgtataa ttcatcagaa caggtcaagt atgagaatca tactgagaat gcgttgttat 1020 tgtatatggc atgtacacat gcctcaaatc ctgtgtatgc tactttgaaa atacgcatct 1080 atttctatga tgcagtgaca aattaataaa tgttgaattt tattgcatgt tgctccgtaa 1140 cttggagtgt gtttagtaat acagcgtaca gaacatgatc aacagctcta attacagtgt 1200 taatggaaat aacgcctagc atatctaaat acttgagcac ttgatatcta aatactctta 1260 agaaaagacc agtctgaggc cgtaaggtcg tccagacctt gaagttgaga aaacacttgt 1320 gaatcgccaa tgccttccgg aggttgtggt tgaaacgtat ctggagtgtg atgatgtcgt 1380 ggttcatggt ccctggcctc ttgtcgtggt tggtgatttc gaaatagagg ggatttgtta 1440 tttcccaggt aaaaacgcca ttctttgctt gaggcgcagt gatgagttcc cctgtgcgag 1500 aatccatggt tgatgcagtc gatatggaga tagaacgagc agccgcattc gaggtctacc 1560 cgcctacgtc tgatggccct gttcttcgct gtgcggtgtt ggacttggat gggcacttga 1620 gaacaatggc tcgtggaggg tgacgaaggt ggcattcttt aaagcccagg ctttaaggga 1680 ctgattcttt tcctcttcca gaaactcttt atatgatgat gttggtcctg gattgcagag 1740 gaagatagtg ggaatgccgc ctttaatttg aatgggcttc ccgtactttg tattgctttg 1800 ccagtccctt tgggccccca tgaattcttt gaagtgcttg aggtagtggg ggtcgacgtc 1860 atcaatgacg ttgtaccatg cgtcgtttga atataccttt ggagacagat ccaggtgtcc 1920 acatagataa ttatggggtc ccagtgaacg agcccacatg gttttcccgg tccggctatc 1980 gccttcgaga acaatactga tcggtctcca tggccgcgca gcgggactgc atatattttc 2040 tgatacccat acctctagtt cttcggggac ttgtgtaaat gaggatgata agaacggact 2100 aacgtaagtt tgtggcggag cctggaagat tctatctgcg ttagcagata tgttatggaa 2160 ctgtaaaaaa aaggacttgg gatctttttc tttgataatt tgaagagctt cggatttaga 2220 agaagcattc aacgcgtcgg catatacctg tgctaaatgc tggccctcgc cccttgcact 2280 tcgggcatcg acttggaaaa ttccatcgtc aagaaagtcc cctccctttt caatgtaagc 2340 tttgacatcg gacgatgatt tagctccctg aatgttcgga tggaaatgtg ttgatctgga 2400 tggggaaatg agatcgaaga atctctggtt tgtacattgg aacttgcctt cgaattggat 2460 gagaacatgg agatgaggca ccccatcctg atgtagttct ctgcaaaccc taatgaattt 2520 gatattcgtc gggtaagaaa gggctttcaa ttgggaaagg gcctcgtcct tggttaatga 2580 gcatcgggga taggttatga aataattttt ggcatttatt tgaaaacgac cggctcgtgg 2640 catattggct gtcgtttagg atcgggggac actcaaaact ccaggggaat ggtggaacgg 2700 ggggcattat atatgatgtc ccccaatggc atatgtgtaa ataggtcgac ctccattcaa 2760 aatttgaatt gcgaatattg gcggccatcc gattaatatt 2800 //