ID JF909179; SV 1; circular; genomic DNA; STD; VRL; 2801 BP. XX AC JF909179; XX DT 21-JUN-2012 (Rel. 113, Created) DT 05-DEC-2012 (Rel. 115, Last updated, Version 3) XX DE East African cassava mosaic virus-Kenya isolate DE Comoros:Mayotte:YT33B59:2003 segment DNA-A, complete sequence. XX KW . XX OS East African cassava mosaic virus-Kenya OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RC Publication Status: Online-Only RP 1-2801 RX DOI; 10.1186/1471-2148-12-228. RX PUBMED; 23186303. RA De Bruyn A., Villemot J., Lefeuvre P., Villar E., Hoareau M., RA Harimalala M., Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B., RA Harkins G.W., Varsani A., Martin D.P., Lett J.M.; RT "East African cassava mosaic-like viruses from Africa to Indian ocean RT islands: molecular diversity, evolutionary history and geographical RT dissemination of a bipartite begomovirus"; RL BMC Evol. Biol. 12(1):228-228(2012). XX RN [2] RP 1-2801 RA Villemot J., Lefeuvre P., Villar E., Hoareau M., Harimalala M., RA Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B., Varsani A., Martin D.P., RA Lett J.-M.; RT ; RL Submitted (24-MAR-2011) to the INSDC. RL UMR PVBMT, CIRAD, 7, chemin de l'IRAT, Saint-Pierre, Reunion 97410, France XX DR MD5; 7435d2e3506eda734a5280f2fc84d9e1. XX FH Key Location/Qualifiers FH FT source 1..2801 FT /organism="East African cassava mosaic virus-Kenya" FT /segment="DNA-A" FT /host="Manihot esculenta (cassava)" FT /isolate="Comoros:Mayotte:YT33B59:2003" FT /mol_type="genomic DNA" FT /country="Mayotte" FT /lat_lon="12.77 S 45.22 E" FT /collection_date="2003" FT /db_xref="taxon:1229189" FT gene 174..530 FT /gene="AV2" FT CDS 174..530 FT /codon_start=1 FT /gene="AV2" FT /product="movement protein" FT /db_xref="GOA:I6LZ01" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:I6LZ01" FT /protein_id="AEG90408.1" FT /translation="MWDPLLNDFPETVHGFRSMLAVKYLLHLEQEYDRGTVGAEYIRDL FT IGVLRCKSYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQAHVS FT EAEAVQNVSKPRCP" FT gene 334..1107 FT /gene="AV1" FT CDS 334..1107 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:I6LZ00" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:I6LZ00" FT /protein_id="AEG90407.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPIVRVTRSKIWA FT NRPMYRKPKLYRMYRSPDVPKGCEGPCKVQSYEQRDDVKHIGMVRCVSDVTRGSGITHR FT VGKRFCVKSIYILGKIWMDENIKKQNHTNHVMFFLVRDRRPYGPSPQDFGQVFNMFDNE FT PTTATVKNDLRDRYQVLRKFYATVVGGPSGMKEQALVKRFFRINNHVVYNHQEQAKYEN FT HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN" FT gene complement(1104..1508) FT /gene="AC3" FT CDS complement(1104..1508) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer" FT /db_xref="GOA:I6LZ04" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:I6LZ04" FT /protein_id="AEG90411.1" FT /translation="MDSRTGELITAPQAKNGVFTWEITNPLYFEITNHDKRPGNMNHDI FT ITLQIRFNHNLRKALAIHKCFLNFKVWTTLRPQTGLFLRVFRYQVLKYLDMIGVISINT FT VISAVDHVLYAVLLNTLQVTEQHAIKFNLY" FT gene complement(1249..1656) FT /gene="AC2" FT CDS complement(1249..1656) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /db_xref="GOA:I6LZ03" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:I6LZ03" FT /protein_id="AEG90410.1" FT /translation="MPPSSPSTSHCSQVPIKVQHGTAKNRALRRRRVDLECGCSFYLHI FT DCINHGFSHRGTHHCASSKEWRFYLGNNKSPLFRNHQPRQEAREHEPRHHHTPDTFQPQ FT PPEGIGDSQVFSQLQGLDDLTASDWSFLKSI" FT gene complement(1565..2644) FT /gene="AC1" FT CDS complement(1565..2644) FT /codon_start=1 FT /gene="AC1" FT /product="replication associated protein" FT /db_xref="GOA:I6LZ02" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:I6LZ02" FT /protein_id="AEG90409.1" FT /translation="MPRAGRFQINAKNYFITYPRCSLTKEEALSQLQALSYPTNIKFIR FT VCRELHQDGVPHLHVLIQFEGKFQCTNQRFFDLISPSRSTHFHPNIQGAKSSSDVKAYI FT EKGGEFLDDGIFQVDARSARGEGQHLAQVYADALNASSKSEALQIIKEKDPKSFFLQFH FT NISANADRIFQAPPQTYVSPFLSSSFTHVPEDIEVWVSENICSPAARPWRPISIVLEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIHIKGGIPTIFLCNPGPTSSYKEFLEEDKNQSLKAWALKNATFVTLHEPL FT FSSAHQSPTRHSEEQGPQT" FT gene complement(2254..2487) FT /gene="AC4" FT CDS complement(2254..2487) FT /codon_start=1 FT /gene="AC4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:I6LYZ3" FT /protein_id="AEG90412.1" FT /translation="MGCLISMFSSNSKASSNVQTRDSSISFPRPDQHISIRTFRELNHR FT PMSKLTLKREGNFLTMEFSRSMPEVQGGRASI" XX SQ Sequence 2801 BP; 728 A; 562 C; 717 G; 794 T; 0 other; accggatggc cgcgcccgaa aaagcaggtg gaccccacca tatggccgcg cccgtgaaag 60 atagtggtcc ccgcgcaccc gtttcggtcg gccagtcata tttacgcgtg aaagtctaga 120 tatttgttgt ttgtctttat agacttcgtc gcgaagtagt gaagcgcgtc aacatgtggg 180 atccattgtt gaacgatttc ccagaaaccg ttcacggttt ccgttctatg cttgctgtta 240 aatacctgtt acatctggaa caggaatacg atcgcggtac tgtcggggct gagtacatac 300 gggatctaat aggggttcta cggtgtaaga gttatgtcga agcgaccagg agatataata 360 atctcaacac ccgtatccaa ggtgcggagg aggctgaact tcgacagccc atacacgaac 420 cgtgttgttg cccccattgt ccgcgtcacc agaagcaaaa tatgggccaa caggcccatg 480 tatcggaagc cgaagctgta cagaatgtat cgaagcccag atgtccctaa gggctgtgaa 540 ggcccatgta aggttcagtc gtatgaacag agggatgatg ttaagcacat tggtatggtc 600 cgatgtgtca gtgatgttac tcgtgggtca ggcattaccc atagagtcgg gaagaggttt 660 tgtgtgaagt ccatatatat attgggcaag atctggatgg atgagaatat caagaagcaa 720 aatcatacga accatgttat gttcttcctc gttcgagaca gaaggcctta tggtccgagc 780 ccgcaagatt ttggacaagt gttcaacatg tttgataatg aacctactac tgcaactgtg 840 aagaatgatc tgagggaccg gtatcaggtg ttacgtaaat tctatgcgac tgttgttggt 900 ggaccctccg ggatgaagga acaagcgctg gttaagaggt tttttaggat caataatcat 960 gtagtgtata atcatcagga acaggccaag tatgagaatc atactgagaa tgcgttgtta 1020 ttgtatatgg catgtacaca tgcctcaaat cctgtgtacg ctactttgaa aatacgcatc 1080 tatttctatg atgcagtgac aaattaataa aggttgaatt ttattgcatg ttgctccgta 1140 acttggagtg tgtttagtaa tacagcgtac agaacatgat caacagcgct aattacagtg 1200 ttaatggaaa taacgcctat catatctaaa tacttgagca cttgatatct aaatactctt 1260 aagaaaagac cagtctgagg ccgtaaggtc gtccagacct tgaagttgag aaaacacttg 1320 tgaatcgcca atgccttccg gaggttgtgg ttgaaacgta tctggagtgt gatgatgtcg 1380 tggttcatgt tccctggcct cttgtcgtgg ttggtgattt cgaaatagag gggatttgtt 1440 atttcccagg taaaaacgcc attctttgct tgaggcgcag tgatgagttc ccctgtgcga 1500 gaatccatgg ttgatgcagt cgatatggag atagaacgag cagccacatt cgaggtctac 1560 ccgcctacgt ctgagggccc tgttcttcgc tgtgccgtgt tggactttga tgggcacttg 1620 agaacaatgg ctcgtggagg gtgacgaagg tggcattctt taaagcccag gctttaaggg 1680 actgattctt gtcctcttcc agaaactctt tatatgatga tgttggtcct ggattgcaga 1740 ggaagatagt gggaatgccg cctttaatgt gaattggctt cccgtacttt gtattgcttt 1800 gccagtccct ttgggccccc atgaattctt tgaagtgctt tagataatgc gggtctacgt 1860 cgtcaatgac gttgtaccag gcgtcgtttg aatatacctt tggagacaga tccaggtgtc 1920 cacatagata attatggggt cccagtgaac gagcccacat ggtttttccg gttcggctat 1980 caccttcgag aacaatactg atcggtctcc atggccgcgc agcgggactg catatatttt 2040 ctgataccca tacctctatg tcttcgggga cgtgtgtaaa tgatgatgat aagaacggac 2100 taacgtatgt ttgtggcgga gcctggaaga ttcgatctgc gttagcagat atgttatgga 2160 actgtaaaaa aaaggacttg ggatcttttt ctttaataat ttgaagagct tctgatttag 2220 aagaagcatt caacgcgtct gcatatacct gagctaaatg ctggccctcc ccccttgcac 2280 ttctggcatc gacctggaaa attccatcgt caagaaattc ccctcccttt tcaatgtaag 2340 ctttgacatc ggacgatgat ttagctccct gaatgttcgg atggaaatgt gttgatctgg 2400 acggggaaat gagatcgaag aatctctggt ttgtacattg gaacttgcct tcgaattgga 2460 tgagaacatg gagatgaggc accccatcct gatgtagttc tctgcaaacc ctaatgaatt 2520 tgatattcgt cgggtaagaa agggcttgta attgggaaag ggcctcttcc ttggttaagg 2580 agcatcgggg ataggtgatg aaataatttt tggcatttat ttgaaaacga ccggctcttg 2640 gcatatttgc tgtcgttttg gatcggtgga cactcaaaac tccaggggaa tggtggaacg 2700 gtgggcatta tatatgatgt cccccaatgg catatgtgta aataggtcaa cctccattca 2760 aaatttgaat gtcgaatatt ggcggccatc cgattaatat t 2801 //