ID JF909174; SV 1; circular; genomic DNA; STD; VRL; 2801 BP. XX AC JF909174; XX DT 21-JUN-2012 (Rel. 113, Created) DT 05-DEC-2012 (Rel. 115, Last updated, Version 3) XX DE East African cassava mosaic virus-Kenya isolate DE Comoros:Mayotte:YT24B16:2004 segment DNA-A, complete sequence. XX KW . XX OS East African cassava mosaic virus-Kenya OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RC Publication Status: Online-Only RP 1-2801 RX DOI; 10.1186/1471-2148-12-228. RX PUBMED; 23186303. RA De Bruyn A., Villemot J., Lefeuvre P., Villar E., Hoareau M., RA Harimalala M., Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B., RA Harkins G.W., Varsani A., Martin D.P., Lett J.M.; RT "East African cassava mosaic-like viruses from Africa to Indian ocean RT islands: molecular diversity, evolutionary history and geographical RT dissemination of a bipartite begomovirus"; RL BMC Evol. Biol. 12(1):228-228(2012). XX RN [2] RP 1-2801 RA Villemot J., Lefeuvre P., Villar E., Hoareau M., Harimalala M., RA Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B., Varsani A., Martin D.P., RA Lett J.-M.; RT ; RL Submitted (24-MAR-2011) to the INSDC. RL UMR PVBMT, CIRAD, 7, chemin de l'IRAT, Saint-Pierre, Reunion 97410, France XX DR MD5; ed91f357f3f47aa4d4999a9b39842855. XX FH Key Location/Qualifiers FH FT source 1..2801 FT /organism="East African cassava mosaic virus-Kenya" FT /segment="DNA-A" FT /host="Manihot esculenta (cassava)" FT /isolate="Comoros:Mayotte:YT24B16:2004" FT /mol_type="genomic DNA" FT /country="Mayotte" FT /lat_lon="12.92 S 45.16 E" FT /collection_date="2004" FT /db_xref="taxon:1229189" FT gene 174..530 FT /gene="AV2" FT CDS 174..530 FT /codon_start=1 FT /gene="AV2" FT /product="movement protein" FT /db_xref="GOA:I6LYX1" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:I6LYX1" FT /protein_id="AEG90378.1" FT /translation="MWDPLLNDFPETVHGFRSMLAVKYLLHLEQEYDRGTVGAEYIRDL FT IGVLRCKSYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQAHVS FT EAEDVQNVSKPRRP" FT gene 334..1107 FT /gene="AV1" FT CDS 334..1107 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:I6LX04" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:I6LX04" FT /protein_id="AEG90377.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKIWA FT NRPMYRKPKMYRMYRSPDVPKGCEGPCKVQSYEQRDDVKHTGMVRCVSDVTRGSGITHR FT VGKRFCVKSIYILGKIWMDENIKKQNHTNHVMFFLVRDRRPYGPSPQDFGQVFNMFDNE FT PTTATVKNDLRDRYQVLRKFYATVIGGPSGMKEQALVKRFFRINNHVVYNHQEQAKYEN FT HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN" FT gene complement(1104..1508) FT /gene="AC3" FT CDS complement(1104..1508) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer" FT /db_xref="GOA:I6LYX4" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:I6LYX4" FT /protein_id="AEG90381.1" FT /translation="MDSRTGELITAPQAKNGVFTWELTNPLYFEITNHDKRPGNMNHDI FT ITLQIRFNHNLRKALAIHKCFLNFKVWTTLRPPTGLFLRVFRYQVLKYLNMIGVISINT FT VIRAVDHVLYAVLLNTLQVTEQHAIKFNIY" FT gene complement(1249..1656) FT /gene="AC2" FT CDS complement(1249..1656) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /db_xref="GOA:I6LYX3" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:I6LYX3" FT /protein_id="AEG90380.1" FT /translation="MPPSSPSTSHCSQVPIKVQHRTAKNRALRRRRVDLECGCSFYLHI FT DCINHGFSHRGTHHCASSKEWRFYLGTNKSPLFRNHQPRQEAREHEPRHHHTPDTFQPQ FT PPEGIGDSQVFSQLQGLDDLTASDWSFLKSI" FT gene complement(1565..2644) FT /gene="AC1" FT CDS complement(1565..2644) FT /codon_start=1 FT /gene="AC1" FT /product="replication associated protein" FT /db_xref="GOA:I6LYX2" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:I6LYX2" FT /protein_id="AEG90379.1" FT /translation="MPRAGRFQINAKNYFITYPRCSLTKEEALSQLKALSYPTIIKFIR FT VCRELHQDGVPHLHVLIQFEGKFQCTNQRFFDLISPSRSTHFHPNIQGAKSSSDVKAYI FT EKGGEFLDDGIFQVDARSARGEGQHLAQVYADALNASSKSEALQIIKEKDPKSFFLQFH FT NISANADRIFQAPPQTYVSPFLSSSFTHVPEELEVWVSENICSPAARPWRPISIVLEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLEEEKNQSLKAWALKNATFVTLHEPL FT FSSAHQSPTPHSEEQGPPT" FT gene complement(2254..2487) FT /gene="AC4" FT CDS complement(2254..2487) FT /codon_start=1 FT /gene="AC4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:I6LYX5" FT /protein_id="AEG90382.1" FT /translation="MGCLISMFSSNSKASSNVPTRDSSISFPPPDQHISIRTFRELNHR FT PMSKLTLKREGNFLTMEFSKSMPEVQGARASI" XX SQ Sequence 2801 BP; 732 A; 552 C; 736 G; 781 T; 0 other; accggatggc cgcgcccgaa aaagcaggtg gaccccacgg tatgaccgcg cccgtgaaag 60 aaagtggtcc ccgcgcacgt gtttcggtcg gccagtcata tttacgcgtg aaagtctaga 120 tatttgtggt ttgtctttat agacttcgtc gcgaagtagt gaagcgcgtc aacatgtggg 180 atccattatt gaacgatttc cctgaaaccg ttcacggttt ccgttctatg cttgcagtta 240 aatacctgtt acatctggaa caggaatacg atcgcggtac tgtcggggct gagtatatac 300 gggatctaat aggggtgcta cggtgtaaga gttatgtcga agcgaccagg agatataata 360 atctcaacac ccgtatccaa ggtgcggagg aggctgaact tcgacagccc atacacgaac 420 cgtgttgttg cccccactgt ccgcgtcacc agaagcaaaa tatgggccaa caggcccatg 480 tatcggaagc cgaagatgta cagaatgtat cgaagcccag acgtccctaa gggctgtgaa 540 ggcccatgta aggttcagtc gtatgaacag agggatgatg ttaagcacac tggtatggtc 600 cgatgtgtca gtgatgttac tcgtgggtca ggcattaccc atagagtcgg gaagaggttt 660 tgtgtgaagt ccatatatat attgggcaag atttggatgg atgagaatat caagaagcaa 720 aatcatacga accatgttat gttcttcctc gttcgagata gaaggccgta tggtccgagc 780 ccgcaagatt ttggacaagt gttcaacatg tttgataatg aacctactac ggcaactgtt 840 aagaatgatc ttagggaccg gtatcaggtg ttacgtaaat tctatgcgac tgtgattggt 900 ggaccctccg ggatgaagga acaagcgctg gttaagaggt tttttaggat caataatcat 960 gtagtgtata atcaccagga acaggccaag tatgagaatc atactgagaa tgcgttgtta 1020 ttgtatatgg catgtacaca tgcctcaaat cctgtgtacg ctactttgaa aatacgcatc 1080 tatttctatg atgcagtgac aaattaataa atgttgaatt ttattgcatg ttgctccgta 1140 acttggagtg tgtttagtaa tacagcgtac agaacatgat caacagctct aattacagtg 1200 ttaatggaaa taacgcctat catatttaaa tatttgagca cttgatatct aaatactctt 1260 aagaaaagac cagtcggagg ccgtaaggtc gtccagacct tgaagttgag aaaacacttg 1320 tgaatcgcca atgccttccg gaggttgtgg ttgaaacgta tctggagtgt gatgatgtcg 1380 tggttcatgt tccctggcct cttgtcgtgg ttggtgattt cgaaatagag gggatttgtt 1440 agttcccagg taaaaacgcc attctttgct tgaggcgcag tgatgagttc ccctgtgcga 1500 gaatccatgg ttgatgcagt cgatatggag atagaacgag cagccgcatt cgaggtctac 1560 ccgcctacgt cggagggccc tgttcttcgc tgtgcggtgt tggactttga tgggcacttg 1620 agaacaatgg ctcgtggagg gtgacgaagg tggcattctt taaagcccag gctttaaggg 1680 actgattctt ttcctcttcc agaaactctt tataggatga tgttggtcct ggattgcaga 1740 ggaagatagt gggaatgccg cctttaattt gaattggctt cccgtacttt gtattgcttt 1800 gccagtccct ttgggccccc atgaattctt tgaagtgttt gaggtagtgg gggtcgacgt 1860 catcaatgac gttgtaccat gcgtcgtttg aatatacctt tggagacaga tccaggtgtc 1920 cacatagata attatggggt cccagtgaac gagcccacat ggttttcccg gtccggctat 1980 cgccttcgag aacaatactg atcggtctcc atggccgcgc agcgggactg catatatttt 2040 ctgaaaccca tacctctagt tcttcgggga cgtgtgtaaa tgaggatgat aagaacggac 2100 taacgtaagt ttggggcgga gcctggaaga ttctatctgc gttagcagat atgttatgga 2160 actgtaaaaa aaaggacttg ggatcttttt ctttaataat ttgaagagct tctgatttag 2220 aagaagcatt caacgcgtcg gcatatacct gagctaaatg ctggccctcg ccccttgcac 2280 ttcgggcatc gacttggaaa attccatcgt caagaaattc ccctcccttt tcaatgtaag 2340 ctttgacatc ggacgatgat ttagctccct gaatgttcgg atggaaatgt gttgatcggg 2400 agggggaaat gagatcgaag aatctctggt tggtacattg gaacttgcct tcgaattgga 2460 tgagaacatg gagatgaggc accccatcct gatgtagttc tctgcaaacc ctaatgaatt 2520 tgataatcgt ggggtaagaa agggctttta attgggaaag ggcctcttcc ttggttaatg 2580 agcatcgggg ataggttatg aaataatttt tggcatttat ttgaaaacga ccggctcgtg 2640 gcatatttgc tgtcgtttag gatcggggga cactcaaaac tccaggggaa tgggggaacg 2700 gggggcaata tatatgatgt cccccaatgg catatgtgta aataggtcga cctccattca 2760 aattttgaat tgcgaatatt ggcggccatc cgattaatat t 2801 //