ID JF909172; SV 1; circular; genomic DNA; STD; VRL; 2797 BP. XX AC JF909172; XX DT 21-JUN-2012 (Rel. 113, Created) DT 05-DEC-2012 (Rel. 115, Last updated, Version 3) XX DE East African cassava mosaic Kenya virus isolate DE Comoros:Mayotte:YT14B79:2005 segment DNA-A, complete sequence. XX KW . XX OS East African cassava mosaic Kenya virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RC Publication Status: Online-Only RP 1-2797 RX DOI; 10.1186/1471-2148-12-228. RX PUBMED; 23186303. RA De Bruyn A., Villemot J., Lefeuvre P., Villar E., Hoareau M., RA Harimalala M., Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B., RA Harkins G.W., Varsani A., Martin D.P., Lett J.M.; RT "East African cassava mosaic-like viruses from Africa to Indian ocean RT islands: molecular diversity, evolutionary history and geographical RT dissemination of a bipartite begomovirus"; RL BMC Evol. Biol. 12(1):228-228(2012). XX RN [2] RP 1-2797 RA Villemot J., Lefeuvre P., Villar E., Hoareau M., Harimalala M., RA Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B., Varsani A., Martin D.P., RA Lett J.-M.; RT ; RL Submitted (24-MAR-2011) to the INSDC. RL UMR PVBMT, CIRAD, 7, chemin de l'IRAT, Saint-Pierre, Reunion 97410, France XX DR MD5; c9cad9aefdd9f6b5944b861f829d821e. XX FH Key Location/Qualifiers FH FT source 1..2797 FT /organism="East African cassava mosaic Kenya virus" FT /segment="DNA-A" FT /host="Manihot esculenta (cassava)" FT /isolate="Comoros:Mayotte:YT14B79:2005" FT /mol_type="genomic DNA" FT /country="Mayotte" FT /lat_lon="12.72 S 45.12 E" FT /collection_date="2005" FT /db_xref="taxon:393599" FT gene 173..529 FT /gene="AV2" FT CDS 173..529 FT /codon_start=1 FT /gene="AV2" FT /product="movement protein" FT /db_xref="GOA:I6LZ49" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:I6LZ49" FT /protein_id="AEG90366.1" FT /translation="MWDPLLNDFPETVHGFRSMLAVKYLLHLEQEYDRGTVGAEYIRDL FT IGVLRCKSYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQAHVS FT EAEDVQNVSKPRCP" FT gene 333..1106 FT /gene="AV1" FT CDS 333..1106 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:I6LYV8" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:I6LYV8" FT /protein_id="AEG90365.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKIWA FT NRPMYRKPKMYRMYRSPDVPKGCEGPCKVQSYEQRDDVKHTGMVRCVSDVTRGSGITHR FT VGKRFCVKSIYILGKIWMDENIKKQNHTNHVMFFLVRDRRPYGPSPQDFGQVFNMFDNE FT PTTATVKNDLRDRYQVLRKFYATVVGGPSGMKEQAPVKRFFRINNHVVYNHQEQAKYEN FT HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN" FT gene complement(1103..1507) FT /gene="AC3" FT CDS complement(1103..1507) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer" FT /db_xref="GOA:I6LYW2" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:I6LYW2" FT /protein_id="AEG90369.1" FT /translation="MDSRTGELITAPQAKNGVFTWEITNPLYFDITNHDKRPGNMNHDI FT ITLQIRFNHNLRKALAIHKCFLNFKVWTTLRPQTGRFLRVFRYQVLKYLDMIGVISINT FT VIQAVDHVMYDVLLNTLQVTEQHAIKFNLY" FT gene complement(1248..1655) FT /gene="AC2" FT CDS complement(1248..1655) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /db_xref="GOA:I6LZ45" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:I6LZ45" FT /protein_id="AEG90368.1" FT /translation="MPPSSPSTSHCSQVPIKVQHRTAKTRALRRRRVDLECGCSFYLHI FT DCINHGFSHRGTHHCASSKEWRFYLGNNKSPLFRHHQPRQEAREHEPRHHHTPDTFQPQ FT PPEGIGDSQVFSQLQGLDDLTASDWSFLKSI" FT gene complement(1564..2643) FT /gene="AC1" FT CDS complement(1564..2643) FT /codon_start=1 FT /gene="AC1" FT /product="replication associated protein" FT /db_xref="GOA:I6LYW0" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:I6LYW0" FT /protein_id="AEG90367.1" FT /translation="MPRAGRFSIKAKNYFLTYPKCSLSKEAALDQIQKLQTPTNKLFIK FT ICRELHENGEPHLHALIQFEGKYNCTNQRFFDLISPSRSAHFHPNIQGAKSSSDVKSYL FT DKDGDTIQWGEFQIDGRSARGGQQSANDAYAKALNSANKSEALNVIRELAPKDFVLQFH FT NLNSNLDRIFQEPLAPYVSPFLSSSFTNVPEELEAWVSENVMGSAARPWRPSSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFMEEEKNQSLKAWALKNATFVTLHEPL FT FSSADQSPTPHSEDQGPQT" FT gene complement(2196..2492) FT /gene="AC4" FT CDS complement(2196..2492) FT /codon_start=1 FT /gene="AC4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:I6LYW3" FT /protein_id="AEG90370.1" FT /translation="MKMGNLICMRSFSSRASTIVPTNDSSISYPLPGQPISTQTFRALN FT PAPTSSPIWTRTETPSNGASFRSTDDLLAEDNNQPMTLTPRLLTQQISQRLLM" XX SQ Sequence 2797 BP; 716 A; 573 C; 727 G; 781 T; 0 other; accggatggc cgcgcccgaa aaagcagtgg accccaccgg atggccgcgc ccgttaaaga 60 aagtggtccc cgcgcacatg tttcggtcgt ccagtcatat ttacgcgtga aagtctagat 120 atttgttgtt tgtctttata gacttcgtcg cgaagtagtg aagcgcgtca acatgtggga 180 tccattgttg aacgatttcc ctgaaaccgt gcacggtttc cgttctatgc ttgctgttaa 240 atacctgtta catctggaac aggaatacga tcgcggtact gtcggggctg agtatatacg 300 ggatctaata ggggttctac ggtgtaagag ttatgtcgaa gcgaccagga gatataataa 360 tctcaacacc cgtatccaag gtgcggagga ggctgaactt cgacagccca tacacgaacc 420 gtgttgttgc ccccactgtc cgcgtcacca gaagcaaaat atgggccaac aggcccatgt 480 atcggaagcc gaagatgtac agaatgtatc gaagcccaga tgtccctaag ggctgtgaag 540 gcccatgtaa ggttcagtcg tatgaacaga gggatgatgt taagcacact ggtatggtcc 600 gatgtgtcag tgatgttact cgtgggtcag gcatcaccca tagagtcggg aagagatttt 660 gtgtgaagtc catatatata ttgggcaaga tctggatgga tgagaatatc aagaagcaaa 720 atcatacgaa ccatgttatg ttcttcctcg ttcgagatag aaggccttat ggtccgagcc 780 cgcaagattt tggacaagtg ttcaacatgt ttgataatga acctactacg gcaacggtga 840 agaatgatct gagggaccgg tatcaggtgt tacgaaaatt ctatgcgacc gttgttggtg 900 gaccctccgg gatgaaggaa caagcgccgg tcaagaggtt ttttaggatc aataatcatg 960 tagtgtataa tcatcaggaa caggccaagt atgagaatca tacggagaat gcgttgttat 1020 tgtatatggc atgtacacat gcctcaaatc ctgtgtacgc tactctgaaa atacgcatct 1080 atttctatga tgcagtgaca aattaataaa ggttgaattt tattgcatgt tgctccgtaa 1140 cttggagtgt gtttagtaat acatcgtaca taacatgatc aacagcttgt attacagtgt 1200 taatggaaat aacgcctatc atatctaaat acttgagcac ttgatatcta aatactctta 1260 agaaacgacc agtctgaggc cgtaaggtcg tccagacctt gaagttgaga aaacacttgt 1320 gaatcgccaa tgccttccgg aggttgtggt tgaaacgtat ctggagtgtg atgatgtcgt 1380 ggttcatgtt ccctggcctc ttgtcgtggt tggtgatgtc gaaataaagg ggatttgtta 1440 tttcccaggt aaaaacgcca ttctttgctt gaggcgcagt gatgagttcc cctgtgcgag 1500 aatccatggt tgatgcagtc gatatggaga tagaacgagc agccacattc gaggtctact 1560 cgcctacgtc tgagggccct ggtcttcgct gtgcggtgtt ggactttgat cggcacttga 1620 gaacaatggc tcgtggaggg tgacgaaggt ggcattcttt aaagcccagg ctttaaggga 1680 ctgattcttt tcctcttcca taaactcttt atatgatgat gttggtcctg gattgcaaag 1740 gaagatagtg ggaatgccgc ctttaatttg aattggcttc ccgtactttg tattgctttg 1800 ccagtccctt tgggccccca tgaattcttt gaagtgtttg aggtagtggg ggtcgacgtc 1860 atcaatgacg ttgtaccagg cgtcgttgct gtagaccttt ggactgagat ccaggtgtcc 1920 acacaagtag ttgtgtggtc ccagagagcg tgcccacatc gtcttccccg tcctactatc 1980 gccctcgatg acgatgctac tcggtctcca tggccgcgca gcggaaccca tcacgttctc 2040 ggaaacccaa gcttcaagtt cctcaggaac gttagtgaaa gaagaagaaa gaaagggaga 2100 aacataagga gccagaggct cttgaaaaat cctatctaaa ttgctattta aattatgaaa 2160 ctgtaaaaca aaatcttttg gggctagttc ccgtattaca ttaagagcct ctgacttatt 2220 tgctgagtta agagccttgg cgtaagcgtc attggctgat tgttgtcctc cgcgagcaga 2280 tcgtccgtcg atctgaaact cgccccattg gatggtgtct ccgtccttgt ccagatagga 2340 cttgacgtcg gagctggatt tagcgccctg aatgtttggg tggaaatggg ctgaccggga 2400 aggggatatg agatcgaaga atcgttggtt ggtacaattg tacttgccct cgaactgaat 2460 gagcgcatgc agatgaggtt ccccattttc atggagttct ctgcagatct tgatgaacaa 2520 tttatttgtt ggggtttgga gtttctggat ctgatccaat gccgcttctt tggacagaga 2580 gcatttggga tatgttaaga aatagttttt tgctttgatg ctaaaacgac cagcccttgg 2640 cattttcgct gtcgtatagc tatcgggggg cactcaaagt ctgtagcaat cgggggaatg 2700 ggggggcaat ttatatgatg ccccctaaat ggcatttatg taatatcctc attgaatttg 2760 aatttcaaac gtggaaagcg gccatccgta taatatt 2797 //