Dbfetch
ID JF909161; SV 1; circular; genomic DNA; STD; VRL; 2801 BP. XX AC JF909161; XX DT 21-JUN-2012 (Rel. 113, Created) DT 05-DEC-2012 (Rel. 115, Last updated, Version 3) XX DE East African cassava mosaic virus-Kenya isolate DE Seychelles:Mahe:SC18B32:2005 segment DNA-A, complete sequence. XX KW . XX OS East African cassava mosaic virus-Kenya OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RC Publication Status: Online-Only RP 1-2801 RX DOI; 10.1186/1471-2148-12-228. RX PUBMED; 23186303. RA De Bruyn A., Villemot J., Lefeuvre P., Villar E., Hoareau M., RA Harimalala M., Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B., RA Harkins G.W., Varsani A., Martin D.P., Lett J.M.; RT "East African cassava mosaic-like viruses from Africa to Indian ocean RT islands: molecular diversity, evolutionary history and geographical RT dissemination of a bipartite begomovirus"; RL BMC Evol. Biol. 12(1):228-228(2012). XX RN [2] RP 1-2801 RA Villemot J., Lefeuvre P., Villar E., Hoareau M., Harimalala M., RA Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B., Varsani A., Martin D.P., RA Lett J.-M.; RT ; RL Submitted (24-MAR-2011) to the INSDC. RL UMR PVBMT, CIRAD, 7, chemin de l'IRAT, Saint-Pierre, Reunion 97410, France XX DR MD5; 51140b6e33ca51bc0c0b30687584a975. XX FH Key Location/Qualifiers FH FT source 1..2801 FT /organism="East African cassava mosaic virus-Kenya" FT /segment="DNA-A" FT /host="Manihot esculenta (cassava)" FT /isolate="Seychelles:Mahe:SC18B32:2005" FT /mol_type="genomic DNA" FT /country="Seychelles:Mahe" FT /lat_lon="4.76 S 55.51 E" FT /collection_date="2005" FT /db_xref="taxon:1229189" FT gene 174..539 FT /gene="AV2" FT CDS 174..539 FT /codon_start=1 FT /gene="AV2" FT /product="movement protein" FT /db_xref="GOA:I6LYP3" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:I6LYP3" FT /protein_id="AEG90300.1" FT /translation="MWDPLLNDFPETVHGFRSMLAVKYLLHLEQEYDRGTVGAEYIRDL FT IGVLRCKSYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQAHVS FT EAQDVQNVSKPRCPEGL" FT gene 334..1107 FT /gene="AV1" FT CDS 334..1107 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:I6LYP2" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:I6LYP2" FT /protein_id="AEG90299.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKIWA FT NRPMYRKPKMYRMYRSPDVPKGCEGPCKVQSYEQRDDVKHTGMVRCVSDVTRGSGITHR FT VGKRFCVKSIYILGKIWMDENIKKQNHTNHVMFFLVRDRRPYGPSPQDFGQVFNMYDNE FT PTTATVKNDLRDRYQVLRKFYATVIGGPSGMKEQALVKRFFRINNHVVYNHQEQAKYEN FT HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN" FT gene complement(1104..1508) FT /gene="AC3" FT CDS complement(1104..1508) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer" FT /db_xref="GOA:I6LYP6" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:I6LYP6" FT /protein_id="AEG90303.1" FT /translation="MDSRTGELITAPQAKNGVFTWEITNPLYFKITNHDERPGNMNHDI FT ITLQIRFNHNIRKALGIHKCFLNFKVWTTLQPQTGRFLRVFRYQVLKFLDMIGVISINT FT VLRAVDHVLYDVLLNTLQVTETHEIKFNIY" FT gene complement(1249..1656) FT /gene="AC2" FT CDS complement(1249..1656) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /db_xref="GOA:I6LYP5" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:I6LYP5" FT /protein_id="AEG90302.1" FT /translation="MPPSSPSTSHCSHVPIKVQHRTAKNRALRRRRVDLECGCSFYLHI FT DCINHGFSHRGTHHCASSKEWRFYLGNNKSPIFQNHQPRREAREHEPRHHHTPDTVQPQ FT HPEGIGDSQVFSQLQGLDDLTASDWSFLKSI" FT gene complement(1565..2644) FT /gene="AC1" FT CDS complement(1565..2644) FT /codon_start=1 FT /gene="AC1" FT /product="replication associated protein" FT /db_xref="GOA:I6LYP4" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:I6LYP4" FT /protein_id="AEG90301.1" FT /translation="MPRVGRFQINAKNYFITYPRCSLTKEEVLSQLKALSYPTNIKFIR FT VCRELHQDGVPHLHVLIQFEGKFQCTNQRFFDLISPSRSTHFHPNIQGAKSSSDVKAYI FT EKGGDFLDDGIFQVDARSARGEGQHLAQVYADALNASSKSEALQIIKEKDPKSFFLQFH FT NISANADRIFQAPPQTYVSPFLSSSFTDVPDDVKVWVSENICSPAARPWRPISIVLEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLDEEKNQSLKAWALKNATFVTLHEPL FT FSRTHQSPTPHSEEQGPQT" FT gene complement(2254..2487) FT /gene="AC4" FT CDS complement(2254..2487) FT /codon_start=1 FT /gene="AC4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:I6LYJ3" FT /protein_id="AEG90304.1" FT /translation="MGCLISMFSSNSKASSNVQTSDSSISFPHPDQHISIRTFRELSHR FT PMSKLTLKREGTFLTMEFSRSMPEVHGERASI" XX SQ Sequence 2801 BP; 738 A; 564 C; 717 G; 782 T; 0 other; accggatggc cgcgcccgaa aaagcaggtg gtccccactg gaagcacgcg cacgtaaagg 60 aaagtggtcc ccgcgcacgt gtttcggtcg gccagtcata ttcacgcgtg aaagtctaga 120 tatttgtttt ttgtcgatat agacttcgtc acgaagtagt gaagcgcgtc aacatgtggg 180 atccattgtt gaacgatttc cctgaaaccg ttcacggttt ccgttctatg cttgctgtta 240 aatacctgtt acatcttgaa caggaatacg accgcggtac tgtcggggcg gagtatatac 300 gggatctaat aggggttcta cggtgtaaga gttatgtcga agcgaccagg agatataata 360 atctcaacac ccgtatccaa ggtgcggagg aggctgaact tcgacagccc atacacgaac 420 cgtgttgttg cccccactgt ccgcgtcacc agaagcaaaa tatgggccaa caggcccatg 480 tatcggaagc ccaagatgta cagaatgtat cgaagcccag atgtcccgaa gggctgtgaa 540 ggcccatgta aggttcagtc ttatgaacag agggatgatg tgaagcacac gggtatggtc 600 cgatgtgtca gtgatgttac tcgtgggtca ggcattaccc atagagtcgg gaagaggttt 660 tgtgtgaagt ccatatatat attgggcaag atctggatgg atgagaatat caagaagcaa 720 aatcatacga accatgttat gttcttcctc gttcgagata gaaggcctta tgggccgagc 780 ccgcaagatt tcggacaagt gttcaacatg tatgataatg aacctaccac ggcaactgtg 840 aagaatgatc ttagggaccg gtatcaggtg ttgcgtaaat tctatgcgac ggttattggg 900 ggaccctccg ggatgaagga acaagcactg gttaagaggt tttttaggat taataatcat 960 gtagtgtata atcatcagga acaggccaag tatgagaatc atactgagaa tgcgttgtta 1020 ttgtatatgg catgtacaca tgcctcaaat ccagtgtacg ctactctgaa aatacgcatc 1080 tatttctatg atgcagtgac aaattaataa atattaaatt ttatttcatg agtctccgta 1140 acttggagtg tgttgagtaa tacatcgtac agaacatgat caacagctcg aagtacagtg 1200 ttaatggaaa taacgcctat catatctaaa aacttgagca cttgatatct aaatactctt 1260 aagaaacgac cagtctgagg ctgtaaggtc gtccagacct tgaagttgag aaaacacttg 1320 tgaatcccca atgccttccg gatgttgtgg ttgaaccgta tctggagtgt gatgatgtcg 1380 tggttcatgt tccctggcct ctcgtcgtgg ttggtgattt tgaaatatag gggatttgtt 1440 atttcccagg taaaaacgcc attctttgct tgaggcgcag tgatgagttc ccctgtgcga 1500 gaatccatgg ttgatgcagt cgatatggag atagaacgag cagccgcatt cgaggtctac 1560 ccgcctacgt ctgagggccc tgttcttcgc tgtgcggtgt tggactttga tgggtacgtg 1620 agaacaatgg ctcgtggagg gtgacgaagg tggcattctt taaagcccag gctttaaggg 1680 actgattctt ttcctcgtcc agaaactctt tatatgatga tgttggtcct ggattgcaga 1740 ggaagatagt gggaatgccg cctttaattt gaattggctt cccgtacttc gtattgcttt 1800 gccagtccct ttgggccccc atgaactctt tgaaatgctt tagataatgc gggtctacgt 1860 cgtcaatgac gttgtaccat gcgtcgtttg aatatacctt tggagacaga tccaggtgtc 1920 cacatagata attatggggt cccagtgaac gagcccacat ggttttccct gtgcggctat 1980 caccttctag aacaatactg atcggtctcc atggccgcgc agcgggactg catatattct 2040 ctgataccca tacttttacg tcgtctggga cgtctgtaaa tgatgaggat aagaacggac 2100 taacgtaagt ttgtggcgga gcctggaaga ttctatctgc gttagcagat atgttatgga 2160 actgtaaaaa aaaggacttt ggatcttttt ccttaatgat ttgaagagct tctgatttag 2220 aagaagcatt caacgcgtcc gcatatacct gagctaaatg ctggccctct ccccgtgcac 2280 ttctggcatc gacctggaaa attccatcgt caagaaagtc ccctcccttt tcaatgtaag 2340 ctttgacatc ggacgatgac ttagctccct gaatgttcgg atggaaatgt gttgatcggg 2400 atggggaaat gagatcgaag aatcgctggt ttgtacattg gaacttgcct tcgaattgga 2460 tgagaacatg gagatgaggc accccatcct gatgtagttc acggcaaacc ctaatgaatt 2520 tgatatttgt cgggtaagaa agggctttta attgggaaag gacctcttcc ttcgttaatg 2580 agcatcgggg ataggtgatg aaataatttt tggcattgat ttgaaaacga cctactcttg 2640 gcatagttgc tgtcgttttg aatcggggga cactcaaagt ctgtggcaat cggtggaacg 2700 gtgggcaata tatatggtgt cccccaatgg cataatggta aataggtaga cttccatttg 2760 aaatttgaat ttcgatgatt ggcggccatc cgattaatat t 2801 //