ID JF909156; SV 1; circular; genomic DNA; STD; VRL; 2801 BP. XX AC JF909156; XX DT 21-JUN-2012 (Rel. 113, Created) DT 05-DEC-2012 (Rel. 115, Last updated, Version 3) XX DE East African cassava mosaic virus-Kenya isolate DE Seychelles:Mahe:SC12B01:2004 segment DNA-A, complete sequence. XX KW . XX OS East African cassava mosaic virus-Kenya OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RC Publication Status: Online-Only RP 1-2801 RX DOI; 10.1186/1471-2148-12-228. RX PUBMED; 23186303. RA De Bruyn A., Villemot J., Lefeuvre P., Villar E., Hoareau M., RA Harimalala M., Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B., RA Harkins G.W., Varsani A., Martin D.P., Lett J.M.; RT "East African cassava mosaic-like viruses from Africa to Indian ocean RT islands: molecular diversity, evolutionary history and geographical RT dissemination of a bipartite begomovirus"; RL BMC Evol. Biol. 12(1):228-228(2012). XX RN [2] RP 1-2801 RA Villemot J., Lefeuvre P., Villar E., Hoareau M., Harimalala M., RA Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B., Varsani A., Martin D.P., RA Lett J.-M.; RT ; RL Submitted (24-MAR-2011) to the INSDC. RL UMR PVBMT, CIRAD, 7, chemin de l'IRAT, Saint-Pierre, Reunion 97410, France XX DR MD5; 8031b113653251e80f3d32909a138110. XX FH Key Location/Qualifiers FH FT source 1..2801 FT /organism="East African cassava mosaic virus-Kenya" FT /segment="DNA-A" FT /host="Manihot esculenta (cassava)" FT /isolate="Seychelles:Mahe:SC12B01:2004" FT /mol_type="genomic DNA" FT /country="Seychelles:Mahe" FT /lat_lon="4.76 S 55.51 E" FT /collection_date="2004" FT /db_xref="taxon:1229189" FT gene 174..539 FT /gene="AV2" FT CDS 174..539 FT /codon_start=1 FT /gene="AV2" FT /product="movement protein" FT /db_xref="GOA:I6LYL3" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:I6LYL3" FT /protein_id="AEG90270.1" FT /translation="MWDPLLNDFPETVHGFRSMLAVKYLLHLEQEYDRGTVGAEYIRDL FT IGVLRCKSYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQAHVS FT EAQDVQTVSKPRCPEGL" FT gene 334..1107 FT /gene="AV1" FT CDS 334..1107 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:I6LYL2" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:I6LYL2" FT /protein_id="AEG90269.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKIWA FT NRPMYRKPKMYRLYRSPDVPKGCEGPCKVQSYEQRDDVKHTGMVRCVSDVTRGSGITHR FT VGKRFCVKSIYILGKIWMDENIKKQNHTNHVMFFLVRDRRPYGPSPQDFGQVFNMYDNE FT PTTATVKNDLRDRYQVLRKFYATVIGGPSGMKEQALVKRFFRINNHVVYNHQEQAKYEN FT HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN" FT gene complement(1104..1508) FT /gene="AC3" FT CDS complement(1104..1508) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer" FT /db_xref="GOA:I6LYL6" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:I6LYL6" FT /protein_id="AEG90273.1" FT /translation="MDSRTGELITAPQAKNGVFTWEITNPLYFNITNHDERPGNMNHDI FT ITLQIRFNHNIRKALGIHKCFLNFKVWTTLRPQTGRFLRVFRYQVLKFLDMIGVISINT FT VLHAVDHVLYDVLINTLQVTETHEIKFNIY" FT gene complement(1249..1656) FT /gene="AC2" FT CDS complement(1249..1656) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /db_xref="GOA:I6LYL5" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:I6LYL5" FT /protein_id="AEG90272.1" FT /translation="MPPSSPSTGHCSQVPIKVQHRTAKNRALRRRRVDLECGCSFYLHI FT DCINHGFSHRGTHHCASSKEWRFYLGNNKSPIFQHHQPRREAREHEPRHHHTPDTVQPQ FT HPEGIGDSQVFSQLQGLDDLTASDWSFLKSI" FT gene complement(1565..2644) FT /gene="AC1" FT CDS complement(1565..2644) FT /codon_start=1 FT /gene="AC1" FT /product="replication associated protein" FT /db_xref="GOA:I6LYL4" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:I6LYL4" FT /protein_id="AEG90271.1" FT /translation="MPRVGRFQINAKNYFITYPRCSLTKEEVLSQLKALSYPTTLKFIR FT ICRELHQDGVPHLHVLIQFEGKFQCTNQRFFDLISPSRSTHFHPNIQGAKSSSDVKAYI FT EKGGDFLDDGIFQVDARSARGEGQHLAQVYADALNASSKSEALQIIKEKDPKSFFLQFH FT NISANADRIFQAPPQTYVSPFLSSSFTDVPDDVEVWVSENICSPAARPWRPISIVLEGD FT SRTGKTMWARSLGPHNYLCGHVDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLDEEKHRSLKAWALKNATFITLHGPL FT FSSTHQSPTPHSEEQGPQT" FT gene complement(2254..2487) FT /gene="AC4" FT CDS complement(2254..2487) FT /codon_start=1 FT /gene="AC4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:I6LYJ3" FT /protein_id="AEG90274.1" FT /translation="MGCLISMFSSNSKASSNVQTSDSSISFPHPDQHISIRTFRELSHR FT PMSKLTLKREGTFLTMEFSRSMPEVHGERASI" XX SQ Sequence 2801 BP; 739 A; 571 C; 709 G; 782 T; 0 other; accggatggc cgcgcccgaa aaagcatgtg gtccccactg gaagcacgcg cacgtaaagg 60 aaagtggtcc ccgcgcactt gtttcggtcg gccagtcata ttcacgcgtg aaagtctaga 120 tatttgttgt ttgtcgatat agacttcgtc gcgaagtagt gaagcgcgtc aacatgtggg 180 atccattgtt gaacgatttc cctgaaaccg ttcacggttt ccgttctatg cttgctgtta 240 aatacctgtt acatcttgaa caggaatacg accgcggtac tgtcggggcg gagtatatac 300 gggatctaat aggggttcta cggtgtaaga gttatgtcga agcgaccagg agatataata 360 atctcaacac ccgtatccaa ggtgcggagg aggctgaact tcgacagccc atacacgaac 420 cgtgttgttg cccccactgt ccgcgtcacc agaagcaaaa tatgggccaa caggcccatg 480 tatcggaagc ccaagatgta cagactgtat cgaagcccag atgtcccgaa gggctgtgaa 540 ggcccatgta aggttcagtc ttatgaacag agggatgatg tgaagcacac tggtatggtc 600 cgatgtgtca gtgatgttac tcgtgggtca ggcattaccc atagagtcgg gaagaggttt 660 tgtgtgaagt ccatatatat attgggcaag atctggatgg atgagaatat caagaagcaa 720 aatcatacga accatgttat gttcttcctc gttcgagata gaaggcctta tgggccgagc 780 ccgcaagatt tcggacaagt gttcaacatg tatgataatg aacctaccac ggcaactgtg 840 aagaatgatc ttagggaccg gtatcaggtg ttgcgtaaat tctatgcgac ggttattggg 900 ggaccctctg ggatgaagga acaagcactg gttaagaggt tttttaggat taataatcat 960 gtagtgtata atcatcagga acaggccaag tatgagaatc atactgagaa tgcgttgtta 1020 ttgtatatgg catgtacaca tgcctcaaat ccagtgtacg ctactctgaa aatacgcatc 1080 tatttctatg atgcagtgac aaattaataa atattaaatt ttatttcatg agtctccgta 1140 acttggagtg tgtttattaa tacatcgtac agaacatgat caacagcgtg aagtacagtg 1200 ttaatggaaa taacgcctat catatctaaa aactttagca cctgatatct aaatactctt 1260 aagaaacgac cagtctgagg ccgtaaggtc gtccagacct tgaagttgag aaaacacttg 1320 tgaatcccca atgccttccg gatgttgtgg ttgaaccgta tctggagtgt gatgatgtcg 1380 tggttcatgt tccctggcct ctcgtcgtgg ttggtgatgt tgaaatatag gggatttgtt 1440 atttcccagg taaaaacgcc attctttgct tgaggcgcag tgatgagttc ccctgtgcga 1500 gaatccatgg ttgatgcagt cgatatggag atagaacgag cagccgcatt cgaggtctac 1560 ccgcctacgt ctgagggccc tgttcttcgc tgtgcggtgt tggactttga tgggtacttg 1620 agaacaatgg cccgtggagg gtgatgaagg tggcattctt taaagcccag gctttaaggg 1680 accgatgctt ttcctcgtcc agaaactctt tatatgatga tgttggtcct ggattgcaga 1740 ggaagatagt gggaatgccg cctttaattt gaattggctt cccgtacttc gtattgcttt 1800 gccagtcccg ttgggccccc atgaactctt tgaaatgctt tagataatgc gggtctacgt 1860 cgtcaatgac gttgtaccat gcgtcgtttg aatatacctt tggagacaga tccacgtgtc 1920 cacataaata attatggggt cccagtgaac gagcccacat ggttttccct gttcggctat 1980 caccttctag aacaatactg atcggtctcc atggccgcgc agcgggactg catatattct 2040 ctgataccca tacttctacg tcgtctggga cgtctgtaaa tgatgaggat aagaacggac 2100 taacgtaagt ttgtggcgga gcctggaaga ttctatctgc gttagcagat atgttatgga 2160 actgtaaaaa aaatgacttt ggatcttttt ccttaatgat ttgaagagct tctgatttag 2220 aagaagcatt caacgcgtcc gcatatacct gagctaaatg ctggccctct ccccgtgcac 2280 ttctggcatc gacctggaaa attccatcgt caagaaagtc ccctcccttt tcaatgtaag 2340 ctttgacatc ggacgatgac ttagctccct gaatgttcgg atggaaatgt gttgatcggg 2400 atggggaaat gagatcgaag aatcgctggt ttgtacattg gaacttgcct tcgaattgga 2460 tgagaacatg gagatgaggc accccatcct gatgtagttc cctgcaaatc ctaatgaatt 2520 tgagagtcgt cgggtaagaa agggctttta attgggaaag gacctcttcc ttcgttaatg 2580 agcatcgggg atatgtgatg aaataatttt tggcattgat ttgaaaacga cctactcggg 2640 gcatatttgc tgtcgttttg aatcggtgga cactcaaagt ctatggcaat cggtggaacg 2700 gggggcaatt tatatgatgt cccccaatgg catatgtgta aataggtcga cttccatttg 2760 aaattcaaat gtcgaataat agcggccatc cgattaatat t 2801 //