Dbfetch
ID JF909154; SV 1; circular; genomic DNA; STD; VRL; 2801 BP. XX AC JF909154; XX DT 21-JUN-2012 (Rel. 113, Created) DT 05-DEC-2012 (Rel. 115, Last updated, Version 3) XX DE East African cassava mosaic virus-Kenya isolate Seychelles:La DE Digue:SC08AX1:2004 segment DNA-A, complete sequence. XX KW . XX OS East African cassava mosaic virus-Kenya OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RC Publication Status: Online-Only RP 1-2801 RX DOI; 10.1186/1471-2148-12-228. RX PUBMED; 23186303. RA De Bruyn A., Villemot J., Lefeuvre P., Villar E., Hoareau M., RA Harimalala M., Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B., RA Harkins G.W., Varsani A., Martin D.P., Lett J.M.; RT "East African cassava mosaic-like viruses from Africa to Indian ocean RT islands: molecular diversity, evolutionary history and geographical RT dissemination of a bipartite begomovirus"; RL BMC Evol. Biol. 12(1):228-228(2012). XX RN [2] RP 1-2801 RA Villemot J., Lefeuvre P., Villar E., Hoareau M., Harimalala M., RA Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B., Varsani A., Martin D.P., RA Lett J.-M.; RT ; RL Submitted (24-MAR-2011) to the INSDC. RL UMR PVBMT, CIRAD, 7, chemin de l'IRAT, Saint-Pierre, Reunion 97410, France XX DR MD5; b3a906d48622fb2390308acca6b34122. XX FH Key Location/Qualifiers FH FT source 1..2801 FT /organism="East African cassava mosaic virus-Kenya" FT /segment="DNA-A" FT /host="Manihot esculenta (cassava)" FT /isolate="Seychelles:La Digue:SC08AX1:2004" FT /mol_type="genomic DNA" FT /country="Seychelles:La Digue" FT /lat_lon="4.37 S 55.84 E" FT /collection_date="2004" FT /db_xref="taxon:1229189" FT gene 174..530 FT /gene="AV2" FT CDS 174..530 FT /codon_start=1 FT /gene="AV2" FT /product="movement protein" FT /db_xref="GOA:I6LX59" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:I6LX59" FT /protein_id="AEG90258.1" FT /translation="MWDPLLNDFPETVHGFRSMLAVKYLLHLEQEYDRGTVGAEYIRDL FT IGVLRCKSYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQAHVS FT EAQDVQNVSKPRCP" FT gene 334..1107 FT /gene="AV1" FT CDS 334..1107 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:I6LX52" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:I6LX52" FT /protein_id="AEG90257.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKIWA FT NRPMYRKPKMYRMYRSPDVPKGCEGPCKVQSYEQRDDVKHTGMVRCVSDVTRGSGITHR FT VGKRFCVKSIYILGKIWMDENIKKQNHTNHVMFFLVRDRRPYGPSPQDFGQVFNMFDNE FT PTTATVKNDLRDRYQVLRKFYATVVGGPSGMKEQALVKRFFRINNHVVYNHQEQAKYEN FT HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN" FT gene complement(1104..1508) FT /gene="AC3" FT CDS complement(1104..1508) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer" FT /db_xref="GOA:I6LYK4" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:I6LYK4" FT /protein_id="AEG90261.1" FT /translation="MDSRTGELITAPQAKNGVFTWEITNPLYFEITNHDERPGNMNHDI FT ITLQIRFNYNLRKTLGIHKCFLNFKVWTTLRPPTGRFLRVFRYQVLKYLDMIGVISINT FT VLQAVDHVMYDVLLNTLQVTETHEIKFNIY" FT gene complement(1249..1656) FT /gene="AC2" FT CDS complement(1249..1656) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /db_xref="GOA:I6LYK9" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:I6LYK9" FT /protein_id="AEG90260.1" FT /translation="MPPSSPSTSHCSLVPIKVQHRTAKTRALRRRRVDLECGCSFYLHI FT DCINHGFSHRGTHHCASSKEWRFYLGNNKSPLFRNHQPRREAREHEPRHHHTPDTVQLQ FT PPENIGDSQMFSQLQGLDDLTASDWSFLKSI" FT gene complement(1580..2644) FT /gene="AC1" FT CDS complement(1580..2644) FT /codon_start=1 FT /gene="AC1" FT /product="replication associated protein" FT /db_xref="GOA:I6LYK8" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:I6LYK8" FT /protein_id="AEG90259.1" FT /translation="MPRVGRFQINAKNYFITYPRCSLTKEEVLSQLKTLSYPTHIKFIR FT VCRELHQDGVPHIHVLIQFEGKFQCTNQRFFDLISPSRSTHFHPNIQGAKSSSDVKAYI FT EKGGEFLDDGIFQIDARSARGEGQHLAQVYADALNASSKSEALQIIKEKDPKSFFLQFH FT NISANADRIFQAPPQTYVSPFLSSSFTDVPDDVEVWVSENICSPAARPWRPISIVLEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLEEEKNQSLKAWALKNATFVTLHEPL FT FSSAHQSPTPHSED" FT gene complement(2254..2487) FT /gene="AC4" FT CDS complement(2254..2487) FT /codon_start=1 FT /gene="AC4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:I6LYL1" FT /protein_id="AEG90262.1" FT /translation="MGCLISMFSSNSKASSNVQTSDSSISFPHPDQHISIRTFRELSPR FT PMSKLTLKRAGNFLTMEFSRSMPEVHGERASI" XX SQ Sequence 2801 BP; 738 A; 558 C; 706 G; 799 T; 0 other; accggatggc cgcgcccgaa aaagcatgtg gatcccacca taagcacgcg ctcgtaaaag 60 aaagtggtcc cgcgcacttg tttcggtcgg ccagtcatat tcacgcgtga aagtctagat 120 atttgttttt ttgtcgttat agacttcgtc gcgaagtagt gaggcgcgtc aacatgtggg 180 atccattgtt gaacgatttc cctgaaaccg ttcacggttt ccgttctatg cttgctgtta 240 aatacctgtt acatcttgaa caggaatacg atcgcggtac tgtcggggcg gagtatatac 300 gggatctaat aggggttcta cggtgtaaga gttatgtcga agcgaccagg agatataata 360 atctcaacac ccgtatccaa ggtgcggagg aggctgaact tcgacagccc atacacgaac 420 cgtgttgttg cccccactgt ccgcgtcacc agaagcaaaa tatgggccaa caggcccatg 480 tatcggaagc ccaagatgta cagaatgtat cgaagcccag atgtccctaa gggctgtgaa 540 ggcccatgta aggttcagtc ttatgaacag agggatgatg tgaagcacac tggtatggtc 600 cgatgtgtca gtgatgttac tcgtgggtca ggcattaccc atagagtcgg gaagaggttc 660 tgtgtgaagt ccatatatat attgggcaag atctggatgg atgagaatat caagaagcaa 720 aatcatacga accatgttat gttcttcctc gttcgagata gaaggcctta tgggccgagc 780 ccgcaagatt ttggacaagt gttcaacatg tttgacaatg aacctactac cgcaactgtg 840 aagaatgatc ttagggaccg gtatcaggtg ttacgtaaat tctatgcgac tgttgttggg 900 ggaccctccg ggatgaagga acaagctctg gttaagaggt tttttaggat taataatcat 960 gtagtgtata atcatcagga acaggccaag tatgagaatc atactgagaa tgcgttgtta 1020 ttgtatatgg catgtacaca tgcctcaaat ccagtgtacg ctacgctgaa aatacgcatc 1080 tatttttatg atgcagtgac aaattaataa atattaaatt ttatttcatg agtctccgta 1140 acttggagtg tgtttagtaa tacatcgtac ataacatgat caacagcttg aagtacagtg 1200 ttaatggaaa taacgcctat catatctaaa tacttgagca cttgatatct aaatactctt 1260 aagaaacgac cagtcggagg ccgtaaggtc gtccagacct tgaagttgag aaaacatttg 1320 tgaatcccca atgttttccg gaggttgtag ttgaaccgta tctggagtgt gatgatgtcg 1380 tggttcatgt tccctggcct ctcgtcgtgg ttggtgattt cgaaatagag gggatttgtt 1440 atttcccagg taaaaacgcc attctttgct tgaggcgcag tgatgagttc ccctgtgcga 1500 gaatccatga ttgatgcagt cgatatggag atagaacgag cagccgcatt cgaggtctac 1560 gcgcctacgt ctgagtgccc tagtcttcgc tgtgcggtgt tggactttga tgggcactag 1620 agaacaatgg ctcgtggagg gtgacgaagg tggcattctt taaagcccag gctttaaggg 1680 actggttctt ttcttcttcc agaaactctt tatatgatga tgttggtcct ggattgcaga 1740 ggaagatagt gggaatgccg cctttaattt gaattggctt cccgtacttc gtattgcttt 1800 gccaatccct ttgggccccc atgaactctt tgaaatgctt tagataatgc gggtctacgt 1860 cgtcaatgac gttgtaccat gcgtcgtttg aatatacctt tggagacaga tccaggtgtc 1920 cacatagata attatggggt cccagtgaac gagcccacat ggttttccct gttcggctat 1980 caccttctag aacaatactg atcggtctcc atggccgcgc agcgggactg catatatttt 2040 ctgataccca tacttcgacg tcgtctggga cgtctgtaaa tgatgaggat aagaacggac 2100 taacgtaagt ttgtggcgga gcctggaaga ttctatctgc gttagcagat atgttatgga 2160 actgtaaaaa aaaggacttt ggatcctttt ccttaataat ctgaagagct tctgatttag 2220 aagaagcatt caatgcgtct gcatatacct gagctaaatg ctggccctct ccccgtgcac 2280 ttctggcatc gatctggaaa attccatcgt caagaaattc cccgcccttt tcaatgtaag 2340 ctttgacatc ggacgaggac ttagctccct gaatgttcgg atggaaatgt gttgatcggg 2400 atggggaaat gagatcgaag aatcgctggt ttgtacattg gaacttgcct tcgaattgga 2460 tgagaacatg gatatgaggc accccatcct gatgtagttc tctgcaaacc ctaatgaatt 2520 tgatatgcgt cgggtaagaa agggttttta attgggaaag gacctcttct ttcgttaatg 2580 agcatcgggg ataggtgatg aaataatttt tggcattgat ttgaaaacga cctactctgg 2640 gcatatttgc tgtcgtttgg aatcggtgga cactcaaagt ctgtggcaat cggtggaacg 2700 gggggcaatt tatatgatgt cccccaatgg catatgtgta aataggtcga cttccatttg 2760 aaatttaaat gtcgaatatt ggcggccatc cgattaatat t 2801 //