Dbfetch
ID JF909138; SV 1; circular; genomic DNA; STD; VRL; 2798 BP. XX AC JF909138; XX DT 21-JUN-2012 (Rel. 113, Created) DT 05-DEC-2012 (Rel. 115, Last updated, Version 3) XX DE East African cassava mosaic Kenya virus isolate Comoros:Moheli:MO13BW3:2009 DE segment DNA-A, complete sequence. XX KW . XX OS East African cassava mosaic Kenya virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RC Publication Status: Online-Only RP 1-2798 RX DOI; 10.1186/1471-2148-12-228. RX PUBMED; 23186303. RA De Bruyn A., Villemot J., Lefeuvre P., Villar E., Hoareau M., RA Harimalala M., Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B., RA Harkins G.W., Varsani A., Martin D.P., Lett J.M.; RT "East African cassava mosaic-like viruses from Africa to Indian ocean RT islands: molecular diversity, evolutionary history and geographical RT dissemination of a bipartite begomovirus"; RL BMC Evol. Biol. 12(1):228-228(2012). XX RN [2] RP 1-2798 RA Villemot J., Lefeuvre P., Villar E., Hoareau M., Harimalala M., RA Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B., Varsani A., Martin D.P., RA Lett J.-M.; RT ; RL Submitted (24-MAR-2011) to the INSDC. RL UMR PVBMT, CIRAD, 7, chemin de l'IRAT, Saint-Pierre, Reunion 97410, France XX DR MD5; 192ae040ed34390a2a22057e21cce100. XX FH Key Location/Qualifiers FH FT source 1..2798 FT /organism="East African cassava mosaic Kenya virus" FT /segment="DNA-A" FT /host="Manihot esculenta (cassava)" FT /isolate="Comoros:Moheli:MO13BW3:2009" FT /mol_type="genomic DNA" FT /country="Comoros:Moheli" FT /lat_lon="12.26 S 43.67 E" FT /collection_date="2009" FT /db_xref="taxon:393599" FT gene 174..530 FT /gene="AV2" FT CDS 174..530 FT /codon_start=1 FT /gene="AV2" FT /product="movement protein" FT /db_xref="GOA:I6LXA7" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:I6LXA7" FT /protein_id="AEG90162.1" FT /translation="MWDPLLNDFPETVHGFRSMLAVKYLLHLEQEYDRGTVGAEYIRDL FT IGVLRCKSYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQAHVS FT EAQDVQNVSKPRCS" FT gene 334..1107 FT /gene="AV1" FT CDS 334..1107 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:I6LY92" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:I6LY92" FT /protein_id="AEG90161.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKIWA FT NRPMYRKPKMYRMYRSPDVPKGCEGPCKVQSYEQRDDVKHTGTVRCVSDVTRGSGITHR FT VGKRFCVKSIYILGKIWMDENIKKQNHTNHVMFFLVRDRRPYGQSPQDFGQVFNMFDNE FT PTTATVKNDFRDRYQVLRKFYATVVGGPSGMKEQALVKRFFRINNHVVYNHQEQAKYEN FT HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN" FT gene complement(1104..1508) FT /gene="AC3" FT CDS complement(1104..1508) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer" FT /db_xref="GOA:I6LY96" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:I6LY96" FT /protein_id="AEG90165.1" FT /translation="MDSRTGELITAPQAKNGVFIWEITNPLYFDITNHDRRPGNMNHDI FT ITFQIRFNHNIRRALGIHKCFLNFKVWTTLRPPTGLFLKVFRYQVLKYLDMIGVISINT FT VIQAVDHVLYNVLLNTLQVTEHHAIKFNLY" FT gene complement(1249..1656) FT /gene="AC2" FT CDS complement(1249..1656) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /db_xref="GOA:I6LYF5" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:I6LYF5" FT /protein_id="AEG90164.1" FT /translation="MPPSSPSTSHCSQVPIKVQHRTAKTRAVRRRRVDLECGCSFYLHI FT DCINHGFSHRGTHHCASSKEWRFYLGNNKSPLFRHHQPRQETREHEPRHHHIPDTVQPQ FT HPEGIGDSQVFSQLQGLDDLTASDWSFLKSI" FT gene complement(1580..2644) FT /gene="AC1" FT CDS complement(1580..2644) FT /codon_start=1 FT /gene="AC1" FT /product="replication associated protein" FT /db_xref="GOA:I6LY82" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:I6LY82" FT /protein_id="AEG90163.1" FT /translation="MPRAGRFSIKAKNYFLTYPKCSLSKEEALNQLRQLQTPTNKLFIK FT ICRELHENGEPHLHALIQFEGKYNCTNQRFFDLISPSRSAHFHPNIQGAKSSSDVKSYL FT DKDGDTIQWGEFQIDGRSARGGQQSANDAYAKALNSANKSEALNVIRELAPKDFVLQFH FT NLNSNLERIFQEPLTPYISPFLSSSFTNVPEELEAWVSENVMGSAARPWRPSSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKAFLDEVKNQSLKAWALKNATFITLHEPL FT FSSAHQSPTPHSED" FT gene complement(2197..2493) FT /gene="AC4" FT CDS complement(2197..2493) FT /codon_start=1 FT /gene="AC4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:I6LY97" FT /protein_id="AEG90166.1" FT /translation="MKMGNLICMPSFSSKASTIVPTNDSSTSYPLPGQPISTQIFRELN FT QAPTSSPIWIRTETPSNGASFRSTDDLLEADNSPPMTLTPRLLTQQISQRLLM" XX SQ Sequence 2798 BP; 727 A; 555 C; 722 G; 794 T; 0 other; accggatggc cgcgcccgaa aaagcaggtg gaccccacaa gatggccgcg cccgttaaag 60 aaaatggtcc ccgcgcactt gttttggtcg gccagtcata ttcacgcgtg aaagtctaga 120 tatttgttgt ttgtctttat agacttcgtc gcgaagtaga tgagcgcgtc aacatgtggg 180 atccattgtt gaacgatttt cccgaaaccg ttcacggttt ccgttctatg cttgctgtta 240 aatacctgtt acatctggaa caggaatacg atcgcggtac tgtcggggcg gagtatatac 300 gtgatttaat aggggttcta cggtgtaaga gttatgtcga agcgaccagg agatataata 360 atctcaacac ccgtatccaa ggtgcggagg aggctgaact tcgacagccc atacacgaac 420 cgtgttgttg cccccactgt ccgcgtcacc agaagcaaaa tatgggccaa caggcccatg 480 tatcggaagc ccaagatgta cagaatgtat cgaagcccag atgttcctaa gggctgtgaa 540 ggcccatgta aggttcagtc ctatgaacag agggatgatg tgaagcacac tggtacggtc 600 cgatgtgtca gtgatgttac tcgtggatca ggcattaccc atagagttgg gaagaggttt 660 tgtgtgaagt ccatatatat attgggcaag atttggatgg atgagaatat caagaagcaa 720 aatcatacga accatgttat gttcttcctt gttcgagata gaaggcctta tggtcagagt 780 cctcaagatt ttggacaagt gttcaacatg tttgataatg aacctactac ggcaactgtg 840 aagaatgatt ttagggaccg atatcaggtg ttacgtaaat tctatgcgac tgttgttggt 900 ggaccctctg ggatgaagga acaagctctg gttaagaggt tttttaggat caataatcat 960 gtagtgtata atcatcagga acaggccaag tatgagaatc atactgagaa tgcgttgtta 1020 ttgtatatgg catgtacaca tgcctcgaat cctgtgtatg cgacgctgaa aatacgcatc 1080 tatttctatg atgcagtgac aaattaataa aggttgaatt ttattgcatg gtgctccgta 1140 acttggagtg tgtttagtaa tacattgtac agaacatgat caacagcttg aattacagtg 1200 ttaatggaaa taacgccaat catatctaaa tacttgagca cttgatatct aaatactttt 1260 aagaaaagac cagtcggagg ccgtaaggtc gtccagacct tgaagttgag aaaacacttg 1320 tgaatcccca atgccctccg gatgttgtgg ttgaaccgta tctggaatgt gatgatgtcg 1380 tggttcatgt tccctggtct cctgtcgtgg ttggtgatgt cgaaatagag gggatttgtt 1440 atttcccaga taaaaacgcc attctttgct tgaggcgcag tgatgagttc ccctgtgcga 1500 gaatccatga ttgatgcagt cgatatggag atagaacgag cagccgcatt cgaggtctac 1560 ccgcctacgt ctgacggccc tagtcttcgc tgtgcggtgt tggactttga tgggcacttg 1620 agaacaatgg ctcgtggagg gtgatgaagg tggcattctt taaagcccag gctttaaggg 1680 actggttctt tacctcgtcc agaaacgctt tatatgatga tgttggtcct ggattgcata 1740 ggaagatagt gggaatgccg cctttaattt gaattggctt cccgtatttt gtgttgcttt 1800 gccagtccct ttgggccccc atgaattctt tgaaatgctt gaggtagtgg gggtctacgt 1860 catcaatgac gttgtaccat gcgtcgttgc tgtatacttt tggactgaga tccaggtgtc 1920 cacacaagta gttatgtggt cccaaagagc gagcccacat tgtcttccct gtcctactat 1980 ctccctcgat tacgatacta ctaggtctcc atggccgcgc agcggaaccc atcacgttct 2040 cggaaaccca ggcttcaagt tcctcaggaa cgttagtgaa agaagaagaa agaaagggag 2100 aaatataagg agtgagaggc tcttgaaaaa tcctctctaa attgctattt aaattatgaa 2160 actgtaaaac aaaatctttt ggggctagtt cccgtattac attaagagcc tctgacttat 2220 ttgctgagtt aagagccttg gcgtaagcgt cattggcgga ctgttgtccg cctcgagcag 2280 atcgtccgtc gatctgaaac tcgccccatt ggatggtgtc tccgtcctta tccagatagg 2340 acttgacgtc ggagcttgat ttagctccct gaatatttgg gtggaaatgg gctgaccggg 2400 aaggggatat gaggtcgaag aatcgttggt tggtacaatt gtacttgcct tcgaactgaa 2460 tgagggcatg cagatgaggt tccccatttt catggagctc tctgcagatc ttgatgaaca 2520 atttatttgt tggggtttgg agttgtcgga gctgattcaa ggcctcttcc ttcgatagag 2580 aacatttggg atatgtgagg aaatagtttt tggctttgat gctaaaacga ccagcccttg 2640 gcatttgcgc tgtcgtatag caatcggggg gcactcaaag tctgtagcaa tcgggggaat 2700 gggggggcaa tttatatgat gccccccaaa tggcatttat gtaatatcct catgaaattt 2760 gaatttcaaa tgtggaaagc ggccatccgt ataatatt 2798 //