ID JF909131; SV 1; circular; genomic DNA; STD; VRL; 2801 BP. XX AC JF909131; XX DT 21-JUN-2012 (Rel. 113, Created) DT 05-DEC-2012 (Rel. 115, Last updated, Version 3) XX DE East African cassava mosaic virus-Kenya isolate Comoros:Moheli:MO09AR2:2009 DE segment DNA-A, complete sequence. XX KW . XX OS East African cassava mosaic virus-Kenya OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RC Publication Status: Online-Only RP 1-2801 RX DOI; 10.1186/1471-2148-12-228. RX PUBMED; 23186303. RA De Bruyn A., Villemot J., Lefeuvre P., Villar E., Hoareau M., RA Harimalala M., Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B., RA Harkins G.W., Varsani A., Martin D.P., Lett J.M.; RT "East African cassava mosaic-like viruses from Africa to Indian ocean RT islands: molecular diversity, evolutionary history and geographical RT dissemination of a bipartite begomovirus"; RL BMC Evol. Biol. 12(1):228-228(2012). XX RN [2] RP 1-2801 RA Villemot J., Lefeuvre P., Villar E., Hoareau M., Harimalala M., RA Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B., Varsani A., Martin D.P., RA Lett J.-M.; RT ; RL Submitted (24-MAR-2011) to the INSDC. RL UMR PVBMT, CIRAD, 7, chemin de l'IRAT, Saint-Pierre, Reunion 97410, France XX DR MD5; f069008266a25850b08a59b3c0fb6447. XX FH Key Location/Qualifiers FH FT source 1..2801 FT /organism="East African cassava mosaic virus-Kenya" FT /segment="DNA-A" FT /host="Manihot esculenta (cassava)" FT /isolate="Comoros:Moheli:MO09AR2:2009" FT /mol_type="genomic DNA" FT /country="Comoros:Moheli" FT /lat_lon="12.27 S 43.73 E" FT /collection_date="2009" FT /db_xref="taxon:1229189" FT gene 174..539 FT /gene="AV2" FT CDS 174..539 FT /codon_start=1 FT /gene="AV2" FT /product="movement protein" FT /db_xref="GOA:I6LY63" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:I6LY63" FT /protein_id="AEG90120.1" FT /translation="MWDPLLNDFPETVHGFRSMLAVKYLLHLEQEYDRGTVGAEYIRDL FT IGVLRCKSYVEATRRYNNLNTRIQGAEEAELRQSVHEPCCCPHCPRHQKQDMGQQAHVS FT EAQDVQNVSKPRCPEGL" FT gene 334..1107 FT /gene="AV1" FT CDS 334..1107 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:I6LY62" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:I6LY62" FT /protein_id="AEG90119.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKIWA FT NRPMYRKPKMYRMYRSPDVPKGCEGPCKVQSYEQKDDVKHTGMVRCVSDVTRGSGITHR FT VGKRFCVKSIYILGKIWMDENIKKQNHTNHVMFFLVRDRRPYGPSPQDFGQVFNMFDNE FT PTTATVKNDLRDRYQVLRKFYATVVGGPSGMKEQALVKRFFRINNHVVYNHQEQAKYEN FT HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN" FT gene complement(1104..1508) FT /gene="AC3" FT CDS complement(1104..1508) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer" FT /db_xref="GOA:I6LY66" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:I6LY66" FT /protein_id="AEG90123.1" FT /translation="MDSRTGELITAPQATNGVFTWEITNPLYFEITNHDRRPGNMNHDI FT ITLQIRFNHNLRKALGIHKCFLNFKVWTTLRPPTGLFLRVFRYQVLKYLDMIGVLSINT FT VLLAVDHVLYDVLLNTLQVTEQHAIKFNLY" FT gene complement(1249..1656) FT /gene="AC2" FT CDS complement(1249..1656) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /db_xref="GOA:I6LY65" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:I6LY65" FT /protein_id="AEG90122.1" FT /translation="MPPSSPSTSHCSLVPIKVQHRTAKTRAVRRRRIDLECGCSFYLHI FT DCINHGFSHRGTHHCASSNEWRFYLGNNKSPLFRNHQPRQTAREHESRHHHTPDTVQPQ FT PPEGIGDSQVFSQLQGLDDLTASDWSFLKSI" FT gene complement(1565..2644) FT /gene="AC1" FT CDS complement(1565..2644) FT /codon_start=1 FT /gene="AC1" FT /product="replication associated protein" FT /db_xref="GOA:I6LY64" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:I6LY64" FT /protein_id="AEG90121.1" FT /translation="MPRAGRFQINARNYFITYPRCSLTKEEALSQLKALSYPTHIKFIR FT VCRELHQDGVPHLHVLIQFEGKFQCTNPRFFDLISTSRSTHFHPNIQGATSSSDVKAYI FT EKGGEFLDDGIFQVDARSARGEGQHLAQVYADALNASSKTEALQIIKEKDPKSFFLQFH FT NISANADRIFQAPPQTYVSPFLSSSFTQVPEDIEVWVSENICSPAARPWRPISIVLEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLDEEKNQSLKAWALKNATFITLHEPL FT FSSAHQSPTPHSEDQGRQT" FT gene complement(2254..2487) FT /gene="AC4" FT CDS complement(2254..2487) FT /codon_start=1 FT /gene="AC4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:I6LY67" FT /protein_id="AEG90124.1" FT /translation="MGCLISMFSSSSKGSSNVPTQDSSISFPHPDPHISIRTFRELHHR FT PMSKLILKREGNFLTMEFSKSMPEVQGGRASI" XX SQ Sequence 2801 BP; 731 A; 563 C; 716 G; 791 T; 0 other; accggatggc cgcccccgaa aaagcaggtg gaccccacca ggtggccgcg cccgtgaagg 60 aaagtggtcc ccgcgcactt gtgttggtcg gccaatcata ttcacgcgtg aaagtctaga 120 tatttgtggt ttgtctttat agacttcgtc gcgaagtagt ggagcgcgtc aacatgtggg 180 atccattgtt gaatgatttt cccgaaaccg ttcacggttt ccgttctatg cttgcggtta 240 aatacctgtt acatctggaa caggaatacg atcgcggtac tgtcggggct gagtatatac 300 gggatctaat aggggttcta cggtgtaaga gttatgtcga agcgaccagg agatataata 360 atctcaacac ccgtatccaa ggtgcggagg aggctgaact tcgacagtcc gtacacgaac 420 cgtgttgttg cccccactgt ccgcgtcacc agaagcaaga tatgggccaa caggcccatg 480 tatcggaagc ccaagatgta cagaatgtat cgaagcccag atgtcccgaa gggctgtgaa 540 ggcccatgta aggttcagtc ctatgaacag aaggatgatg ttaaacacac tggtatggtc 600 cgctgtgtca gtgatgttac tcgtgggtca ggcatcaccc atagagttgg gaagaggttt 660 tgtgtgaagt ccatatatat attgggcaag atctggatgg atgagaatat caagaagcaa 720 aatcatacga accatgttat gttcttcctc gttcgagata gaaggcctta tggtccgagc 780 ccacaagatt ttggacaagt gttcaacatg ttcgataatg aacctacgac ggcaactgtg 840 aagaatgatc ttagggaccg gtatcaggtg ttacgtaaat tctatgcgac tgttgttggt 900 ggaccctctg ggatgaagga acaagctctg gttaagaggt tttttaggat caataatcat 960 gtagtgtata atcatcagga acaggccaag tatgagaatc atactgagaa tgcgttgtta 1020 ttgtatatgg catgtacaca tgcctcgaat cctgtgtacg ctacgctgaa aatacgcatc 1080 tatttttatg atgcagtgac aaattaataa agattgaatt ttattgcatg ttgctccgta 1140 acttggagtg tgtttagtaa tacatcgtac agaacatgat caacagcaag aagtacagtg 1200 ttaatggaaa gaacgcctat catatctaaa tacttgagca cttgatatct aaatactctt 1260 aagaaaagac cagtcggagg ccgtaaggtc gtccagacct tgaagttgag aaaacacttg 1320 tgaatcccca atgccttccg gaggttgtgg ttgaaccgta tctggagtgt gatgatgtcg 1380 tgattcatgt tccctggccg tctgtcgtgg ttggtgattt cgaaatagag gggatttgtt 1440 atttcccagg taaaaacgcc attcgttgct tgaggcgcag tgatgagttc ccctgtgcga 1500 gaatccatga ttgatgcagt cgatatggag atagaacgag cagccgcatt cgaggtctat 1560 ccgcctacgt ctgacggccc tggtcttcgc tgtgcggtgt tggactttga tgggcactag 1620 agaacaatgg ctcgtggagg gtgatgaagg tggcattctt taaagcccag gctttaaggg 1680 actggttctt ttcctcgtcc agaaactctt tatatgatga tgtgggtcct ggattgcaga 1740 ggaagatagt gggaatgccg cctttaattt gaattggctt cccgtacttt gtattgcttt 1800 gccagtctcg ttgggccccc atgaattctt tgaaatgctt tagataatgc gggtctacgt 1860 cgtcaatgac gttgtaccat gcgtcgtttg aatatacctt tggagacaga tccaggtgtc 1920 cacatagata attatggggt cccagtgaac gagcccacat ggttttccct gttcggctat 1980 caccttctag aacaatactt atcggtctcc atggccgcgc agcgggactg catatatttt 2040 ccgataccca tacttctata tcttcgggta cttgtgtaaa tgaggatgat aagaacggac 2100 taacataagt ttggggcgga gcctggaaga ttctatccgc gttagcagat atgttatgga 2160 actgtaaaaa aaaggatttt ggatcttttt ctttaataat ctgaagagct tctgttttag 2220 aagaagcatt caacgcgtct gcatatacct gagctaaatg ctggccctcc ccccttgcac 2280 ttctggcatc gacttggaaa attccatcgt caagaaattc ccctcccttt tcaatataag 2340 ctttgacatc ggacgatgat gtagctccct gaatgttcgg atggaaatgt gtggatctgg 2400 atgtggaaat gagatcgaag aatcttgggt tggtacattg gaacttccct tcgaactgga 2460 tgagaacatg gagatgaggc accccatcct gatgtagttc tcggcaaacc ctaatgaatt 2520 tgatatgcgt cgggtaagaa agggctttta attgggaaag tgcctcttcc tttgttaatg 2580 agcatcgggg ataggtgatg aaataatttc gggcatttat ttgaaaacga ccggctctcg 2640 gcatatttgc tgtcgttttg tatcggtgga cactcaaaac tccaggggaa cggtggactg 2700 gtggacatta tataggatgt cccccaatgg catttgtgta aataggtaga ctcccattta 2760 aaatttgaat tccgcatatt ggcggccatc cgattaatat t 2801 //