ID JF909126; SV 1; circular; genomic DNA; STD; VRL; 2798 BP. XX AC JF909126; XX DT 21-JUN-2012 (Rel. 113, Created) DT 05-DEC-2012 (Rel. 115, Last updated, Version 3) XX DE East African cassava mosaic Kenya virus isolate DE Comoros:Grande-Comore:GC60BO1:2009 segment DNA-A, complete sequence. XX KW . XX OS East African cassava mosaic Kenya virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RC Publication Status: Online-Only RP 1-2798 RX DOI; 10.1186/1471-2148-12-228. RX PUBMED; 23186303. RA De Bruyn A., Villemot J., Lefeuvre P., Villar E., Hoareau M., RA Harimalala M., Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B., RA Harkins G.W., Varsani A., Martin D.P., Lett J.M.; RT "East African cassava mosaic-like viruses from Africa to Indian ocean RT islands: molecular diversity, evolutionary history and geographical RT dissemination of a bipartite begomovirus"; RL BMC Evol. Biol. 12(1):228-228(2012). XX RN [2] RP 1-2798 RA Villemot J., Lefeuvre P., Villar E., Hoareau M., Harimalala M., RA Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B., Varsani A., Martin D.P., RA Lett J.-M.; RT ; RL Submitted (24-MAR-2011) to the INSDC. RL UMR PVBMT, CIRAD, 7, chemin de l'IRAT, Saint-Pierre, Reunion 97410, France XX DR MD5; 11c3875e154aa41a5eefe8d112e2acd9. XX FH Key Location/Qualifiers FH FT source 1..2798 FT /organism="East African cassava mosaic Kenya virus" FT /segment="DNA-A" FT /host="Manihot esculenta (cassava)" FT /isolate="Comoros:Grande-Comore:GC60BO1:2009" FT /mol_type="genomic DNA" FT /country="Comoros:Grande-Comore" FT /lat_lon="11.88 S 43.49 E" FT /collection_date="2009" FT /db_xref="taxon:393599" FT gene 174..530 FT /gene="AV2" FT CDS 174..530 FT /codon_start=1 FT /gene="AV2" FT /product="movement protein" FT /db_xref="GOA:I6LY33" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:I6LY33" FT /protein_id="AEG90090.1" FT /translation="MWDPLLNDFPETVHGFRSMLAVKYLLHLEQEYDRGTVGAEYIRDL FT IGVLRCKSYVEATRRYNNINTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQAHVS FT EAQDVQNVSKPRCS" FT gene 334..1107 FT /gene="AV1" FT CDS 334..1107 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:I6LXD6" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:I6LXD6" FT /protein_id="AEG90089.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKIWA FT NRPMYRKPKMYRMYRSPDVPKGCEGPCKVQSYEQRDDVKHTGMVRCVSDVTRGSGITHR FT VGKRFCVKSIYILGKIWMDENIKKQNHTNHVMFFLVRDRRPYGQSPQDFGQVFNMFDNE FT PTTATVKNDLRDRYQVLRKFYTTVVGGPSGMKEQALVKRFFRINNHVVYNHQEQAKYEN FT HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN" FT gene complement(1104..1508) FT /gene="AC3" FT CDS complement(1104..1508) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer" FT /db_xref="GOA:I6LY36" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:I6LY36" FT /protein_id="AEG90093.1" FT /translation="MDSRTGELITAPQAKNGVFTWEITNPLYFDIPNHDRRPGNMNHDI FT ITFQIRFNHNIRKALGIHKCFLNFKVWTTLRPPTGLFLKVFKYQVLKYLDMIGVISINT FT VIQAVDHVLYNVLLNTLQVTEQHAIKFNLY" FT gene complement(1249..1656) FT /gene="AC2" FT CDS complement(1249..1656) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /db_xref="GOA:I6LY35" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:I6LY35" FT /protein_id="AEG90092.1" FT /translation="MPPSSPSTSHCSQVPIKVQHRTARTRAVRRRRVDLECGCSFYLHI FT DCINHGFSHRGTHHCASSKEWRFYLGNNKSPLFRHPQPRQETREHEPRHHHIPDTVQPQ FT HSEGIGDSQVFSQLQGLDDLTASDWSFLKSI" FT gene complement(1580..2644) FT /gene="AC1" FT CDS complement(1580..2644) FT /codon_start=1 FT /gene="AC1" FT /product="replication associated protein" FT /db_xref="GOA:I6LY34" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:I6LY34" FT /protein_id="AEG90091.1" FT /translation="MPRAGRFSIKAKNYFLTYPKCSLSKEEALDQLRQLQTPTNKLFIK FT ICRELHENGEPHLHALIQFEGKYNCTNQRFFDLISPSRSAHFHPNIQGAKSSSDVKSYL FT DKDGDTIQWGEFQIDGRSARGGQQSANDAYAKALNSANKSEALNVIRELAPKDFVLQFH FT NLNSNLERIFQEPLTPYISPFLSSSFTNVPEELEAWVSENVMGSAARPWRPSSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYNNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLDEEKNQSLKAWALKNATFITLHEPL FT FSSAHQSPTPHSED" FT gene complement(2197..2736) FT /gene="AC4" FT CDS complement(2197..2736) FT /codon_start=1 FT /gene="AC4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:I6LY37" FT /protein_id="AEG90094.1" FT /translation="MPFGGHHINCPPIPPIATDFECPPIAIRQRKCQGLVVLASKPKTI FT SSHIPNVLSRRKRPWISSDNSKPQQINYSSRSAESSMKMGNLICMPSFSSKASTIVPTN FT DSSTSYPLPDQPISTQIFRELNQAPTSSPIWIRTETPSNGASFRSTDDLLEADNNPPMT FT LTQRLLTQPISQRLLM" XX SQ Sequence 2798 BP; 728 A; 553 C; 727 G; 790 T; 0 other; accggatggc cgcgcccgaa aaagcaggtg gaccccacaa gatggccgcg cccgttaaag 60 aaagtggtcc ccgcgcactt gtgttggttg gccagtcata ttcacgcgtg aaagtctaga 120 tatttgttgt ttgtctttat agacttcgtc gcgaagtagt ggagcgcgtc aacatgtggg 180 atccattgtt gaacgatttt cccgaaaccg ttcacggttt ccgttctatg cttgctgtta 240 aatacctgtt acatctggaa caggaatacg atcgcggtac tgtcggggcg gagtatatac 300 gtgatttaat aggggttcta cggtgtaaga gttatgtcga agcgaccagg agatataata 360 atatcaacac ccgtatccaa ggtgcggagg aggctgaact tcgacagccc atacacgaac 420 cgtgttgttg cccccactgt ccgcgtcacc agaagcaaaa tatgggccaa caggcccatg 480 tatcggaagc ccaagatgta cagaatgtat cgaagcccag atgttcctaa gggctgtgaa 540 ggcccatgta aggttcagtc ctatgaacag agggatgatg tgaagcacac tggtatggtc 600 cgatgtgtca gtgatgtaac gcgtggatca ggcattaccc atagagtcgg gaagaggttt 660 tgtgtgaagt ccatatatat attgggcaag atttggatgg atgagaatat caagaagcaa 720 aatcatacga accatgttat gttcttcctt gttcgagata gaaggcctta tggtcagagt 780 cctcaagatt ttggacaagt gttcaacatg tttgataatg aacctactac ggcaactgtg 840 aagaatgatc ttagggaccg atatcaggtg ttacgtaaat tctatacgac tgttgttggt 900 ggaccctctg ggatgaagga acaagctctg gttaagaggt tttttaggat caataatcat 960 gtagtgtata atcatcagga acaggccaag tatgagaatc atactgagaa tgcgttgtta 1020 ttgtatatgg catgtacaca tgcgtcgaat cctgtgtacg ctacgctgaa aatacgcatc 1080 tatttctatg atgcagtgac aaattaataa aggttgaatt ttattgcatg ttgctccgta 1140 acttggagtg tgtttagtaa tacattgtac agaacatgat caacagcttg aattacagtg 1200 ttaatggaaa taacgcctat catatctaaa tacttgagca cttgatattt aaatactttt 1260 aagaaaagac cagtcggagg ccgtaaggtc gtccagacct tgaagttgag aaaacacttg 1320 tgaatcccca atgccttccg aatgttgtgg ttgaaccgta tctggaatgt gatgatgtcg 1380 tggttcatgt tccctggtct cctgtcgtgg ttggggatgt cgaaatagag gggatttgtt 1440 atttcccagg taaaaacgcc attctttgct tgaggcgcag tgatgagttc ccctgtgcga 1500 gaatccatga ttgatgcagt cgatatggag atagaacgag cagccgcatt cgaggtctac 1560 ccgcctacgt ctgacggccc tagtcctcgc tgtgcggtgt tggactttga tgggcacttg 1620 agaacaatgg ctcgtggagg gtgatgaagg tggcattctt taaagcccaa gctttaaggg 1680 actgattctt ttcctcgtcc agaaactctt tatatgatga tgttggtcct ggattgcata 1740 ggaagatagt gggaatgccg cctttaattt gaattggctt cccgtacttt gtattgcttt 1800 gccagtcccg ttgggccccc atgaattctt tgaaatgctt gaggtagtgg gggtcgacgt 1860 catcaatgac gttgtaccat gcgtcgttgt tgtatacctt gggactcaga tccaggtgtc 1920 cacacaagta gttatgtggg cccagagagc gagcccacat tgtcttccct gtcctactat 1980 ctccctcgat gacgatacta ctaggtctcc atggccgcgc agcggaaccc atcacgttct 2040 cggaaaccca tgcttcaagt tcctcaggaa cgttagtgaa agaagaagaa agaaagggag 2100 aaatataagg agtgagaggc tcttgaaaaa tcctctctaa attgctattt aaattatgaa 2160 actgtaaaac aaaatctttt ggggctagtt cccgtattac attaagagcc tctgacttat 2220 tggctgagtt aagagccttt gcgtaagcgt cattggcgga ttgttgtccg cctcgagcag 2280 atcgtccgtc gatctgaaac tcgccccatt ggatggtgtc tccgtcctta tccagatagg 2340 acttgacgtc ggagcttgat ttagctccct gaatatttgg gtggaaatgg gctgatcggg 2400 aaggggatat gaggtcgaag aatcgttggt tggtacaatt gtacttgcct tcgaactgaa 2460 tgagggcatg cagatgaggt tccccatttt catggagctc tctgcagatc ttgatgaata 2520 atttatttgt tggggtttgg agttgtcgga gctgatccaa ggcctcttcc ttcgagagag 2580 aacatttggg atatgtgagg aaatagtttt tggctttgat gctaaaacga ccagcccttg 2640 gcatttgcgc tgtcgtatag caatcggggg gcactcaaag tctgtagcaa tcgggggaat 2700 gggggggcaa tttatatgat gccccccaaa tggcatttat gtaatatcct catgaaattt 2760 gaatttgaaa cgtggaaagc ggccatccgt ataatatt 2798 //