Dbfetch
ID JF909122; SV 1; circular; genomic DNA; STD; VRL; 2798 BP. XX AC JF909122; XX DT 21-JUN-2012 (Rel. 113, Created) DT 05-DEC-2012 (Rel. 115, Last updated, Version 3) XX DE East African cassava mosaic Kenya virus isolate DE Comoros:Grande-Comore:GC49AI4:2009 segment DNA-A, complete sequence. XX KW . XX OS East African cassava mosaic Kenya virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RC Publication Status: Online-Only RP 1-2798 RX DOI; 10.1186/1471-2148-12-228. RX PUBMED; 23186303. RA De Bruyn A., Villemot J., Lefeuvre P., Villar E., Hoareau M., RA Harimalala M., Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B., RA Harkins G.W., Varsani A., Martin D.P., Lett J.M.; RT "East African cassava mosaic-like viruses from Africa to Indian ocean RT islands: molecular diversity, evolutionary history and geographical RT dissemination of a bipartite begomovirus"; RL BMC Evol. Biol. 12(1):228-228(2012). XX RN [2] RP 1-2798 RA Villemot J., Lefeuvre P., Villar E., Hoareau M., Harimalala M., RA Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B., Varsani A., Martin D.P., RA Lett J.-M.; RT ; RL Submitted (24-MAR-2011) to the INSDC. RL UMR PVBMT, CIRAD, 7, chemin de l'IRAT, Saint-Pierre, Reunion 97410, France XX DR MD5; 2d67466a13586bc4a27b1cf72ad89381. XX FH Key Location/Qualifiers FH FT source 1..2798 FT /organism="East African cassava mosaic Kenya virus" FT /segment="DNA-A" FT /host="Manihot esculenta (cassava)" FT /isolate="Comoros:Grande-Comore:GC49AI4:2009" FT /mol_type="genomic DNA" FT /country="Comoros:Grande-Comore" FT /lat_lon="11.89 S 43.45 E" FT /collection_date="2009" FT /db_xref="taxon:393599" FT gene 174..530 FT /gene="AV2" FT CDS 174..530 FT /codon_start=1 FT /gene="AV2" FT /product="movement protein" FT /db_xref="GOA:I6LXA7" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:I6LXA7" FT /protein_id="AEG90066.1" FT /translation="MWDPLLNDFPETVHGFRSMLAVKYLLHLEQEYDRGTVGAEYIRDL FT IGVLRCKSYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQAHVS FT EAQDVQNVSKPRCS" FT gene 334..1107 FT /gene="AV1" FT CDS 334..1107 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:I6LXD6" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:I6LXD6" FT /protein_id="AEG90065.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKIWA FT NRPMYRKPKMYRMYRSPDVPKGCEGPCKVQSYEQRDDVKHTGMVRCVSDVTRGSGITHR FT VGKRFCVKSIYILGKIWMDENIKKQNHTNHVMFFLVRDRRPYGQSPQDFGQVFNMFDNE FT PTTATVKNDLRDRYQVLRKFYTTVVGGPSGMKEQALVKRFFRINNHVVYNHQEQAKYEN FT HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN" FT gene complement(1104..1508) FT /gene="AC3" FT CDS complement(1104..1508) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer" FT /db_xref="GOA:I6LY24" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:I6LY24" FT /protein_id="AEG90069.1" FT /translation="MDSRTGELITAPQAKNGVFTWEITNPLYFDITNHDRRPGNMNHDI FT ITFQIRFNHNIRKALGIHKCFLNFKVWTTLRPPTGLFLRVFRYQVLKYLDMIGVISINT FT VIQAVDHVLYNVLLNTLQVTERHAIKFNLY" FT gene complement(1249..1656) FT /gene="AC2" FT CDS complement(1249..1656) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /db_xref="GOA:I6LY11" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:I6LY11" FT /protein_id="AEG90068.1" FT /translation="MPPSSPSTSHCSQVPIKVQHRTAKTRAVRRRRVDLECGCSFYLHI FT DCINHGFSHRGTHHCASSKEWRFYLGNNKSPLFRHHQPRQETREHEPRHHHIPDTVQPQ FT HSEGIGDSQVFSQLQGLDDLTASDWSFLKSI" FT gene complement(1580..2644) FT /gene="AC1" FT CDS complement(1580..2644) FT /codon_start=1 FT /gene="AC1" FT /product="replication associated protein" FT /db_xref="GOA:I6LY10" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:I6LY10" FT /protein_id="AEG90067.1" FT /translation="MPRAGRFSIKAKNYFLTYPKCSLSKEEALDQIRQLQTPTNKLFIK FT ICRELHENGEPHLHALIQFEGKYNCTNQRFFDLISPSRSAHFHPNIQGAKSSSDVKSYL FT DKDGDTIQWGEFQIDGRSARGGQQSANDAYAKALNSANKSEALNVIRELAPKDFVLQFH FT NLYSNLERIFQEPLTPYISPFLSSSFTNVPEELEAWVSENVMGSAARPWRPSSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKAFLDEEKHQSLKAWALKNATFITLHEPL FT FSSAHQSPTPHSED" FT gene complement(2197..2736) FT /gene="AC4" FT CDS complement(2197..2736) FT /codon_start=1 FT /gene="AC4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:I6LY13" FT /protein_id="AEG90070.1" FT /translation="MPFGGHHINCPPIPPIATDFECPPIAIRQRKCQGLVVLASKPKTI FT SSHIPNVLYRKKRPWIRSDNYKPQQINCSSRSAESSMKMGNLICMPSFSSKASTIVPTN FT DSSTSYPLPGQRISTQIFRELNQAPTSSPIWIRTATPSNGASFRSTDDLLEADNNPPMT FT LTPRLLTQQISPRLLM" XX SQ Sequence 2798 BP; 731 A; 561 C; 718 G; 788 T; 0 other; accggatggc cgcgcccgaa aaaacaggtg gaccccacaa gatggccgcg cccgttaaag 60 aaagtggtcc ccgcgcactt gtgtttgtcg gccagtcata ttcacgcgtg aaagtctaga 120 tatttgttgt ttgtctttat agacttcgtc gcgaagtagt ggagcgcgtc aacatgtggg 180 atccattgtt gaacgatttt cccgaaaccg ttcacggttt ccgttctatg cttgctgtta 240 aatacctgtt acatctggaa caggaatacg atcgcggtac tgtcggggcg gagtatatac 300 gtgatttaat aggggttcta cggtgtaaga gttatgtcga agcgaccagg agatataata 360 atctcaacac ccgtatccaa ggtgcggagg aggctgaact tcgacagccc atacacgaac 420 cgtgttgttg cccccactgt ccgcgtcacc agaagcaaaa tatgggccaa caggcccatg 480 tatcggaagc ccaagatgta cagaatgtat cgaagcccag atgttcctaa gggctgtgaa 540 ggcccatgta aggttcagtc ctatgaacag agggatgatg tgaagcacac tggtatggtc 600 cgatgtgtca gtgatgttac gcgtggatca ggcattaccc atagagtcgg gaagaggttt 660 tgtgtgaagt ccatatatat attgggcaag atttggatgg atgagaatat caagaagcaa 720 aatcatacga accatgttat gttcttcctt gttcgagata gaaggcctta tggtcagagt 780 cctcaagatt ttggacaagt gttcaacatg tttgataatg aacctactac ggcaactgtg 840 aagaatgatc ttagggaccg atatcaggtg ttacgtaaat tctatacgac tgttgttggt 900 ggaccctctg ggatgaagga acaagctctg gttaagaggt tttttaggat caataatcat 960 gtagtgtata atcatcagga acaggccaag tatgagaatc atactgagaa tgcgttgtta 1020 ttgtatatgg catgtacaca tgcctcgaat cctgtgtacg ctacgctgaa aatacgcatt 1080 tatttctatg atgcagtgac aaattaataa aggttgaatt ttattgcatg tcgctccgta 1140 acttggagtg tgtttagtaa tacattgtac agaacatgat caacagcttg aattacagtg 1200 ttaatggaaa taacgcctat catatctaaa tacttgagca cttgatatct aaatactctt 1260 aagaaaagac cagtcggagg ccgtaaggtc gtccagacct tgaagttgag aaaacacttg 1320 tgaatcccca atgccttccg aatgttgtgg ttgaaccgta tctggaatgt gatgatgtcg 1380 tggttcatgt tccctggtct cctgtcgtgg ttggtgatgt cgaaatagag gggatttgtt 1440 atttcccagg taaaaacgcc attctttgct tgaggcgcag tgatgagttc ccctgtgcga 1500 gaatccatga ttgatgcagt cgatatggag atagaacgag cagccgcatt cgaggtctac 1560 ccgcctacgt ctgacggccc tagtcttcgc tgtgcggtgt tggactttga tgggcacttg 1620 agaacaatgg ctcgtggagg gtgatgaagg tggcattctt taaagcccaa gctttaaggg 1680 actgatgctt ttcctcgtcc agaaacgctt tatatgatga tgttggtcct ggattgcata 1740 ggaagatagt gggaatgccg cctttaattt gaattggctt cccgtacttt gtattgcttt 1800 gccagtcccg ttgggccccc atgaattctt tgaaatgctt gaggtagtgg gggtcgacgt 1860 catcaatgac gttgtaccat gcgtcgttgc tgtatacctt tggactcaga tccaggtgtc 1920 cacacaagta gttatgtggt cccaaagagc gagcccacat tgtcttccct gtcctactat 1980 ctccctcgat gacgatacta ctaggtctcc atggccgcgc agcggaaccc atcacgttct 2040 cagaaaccca tgcttcaagt tcctcaggaa cgttagtgaa agaagaagaa agaaagggag 2100 aaatataagg agtgagaggc tcttgaaaaa tcctctccaa attgctatat aaattatgaa 2160 actgtaaaac aaaatctttt ggggctagtt cccgtattac attaagagcc tcggacttat 2220 ttgctgagtt aagagccttg gcgtaagcgt cattggcgga ttgttgtccg cctcgagcag 2280 atcgtccgtc gatctgaaac tcgccccatt ggatggtgtc gccgtcctta tccagatagg 2340 acttgacgtc ggagcttgat ttagctccct gaatatttgg gtggaaatgc gctgaccggg 2400 aaggggatat gaggtcgaag aatcgttggt tggtacaatt gtacttgcct tcgaactgaa 2460 tgagggcatg cagatgaggt tccccatttt catggagctc tctgcagatc ttgatgaaca 2520 atttatttgt tggggtttgt agttgtcgga tctgatccaa ggcctcttct ttcgatagag 2580 aacatttggg atatgtgagg aaatagtttt tggctttgat gctaaaacga ccagcccttg 2640 gcatttgcgc tgtcgtatag caatcggggg gcactcaaag tctgtagcaa tcgggggaat 2700 gggggggcaa tttatatgat gccccccaaa tggcatttat gtaatatcct catgaaattt 2760 gaatttgaaa cgtggaaagc ggccatccat ataatatt 2798 //