ID JF909119; SV 1; circular; genomic DNA; STD; VRL; 2801 BP. XX AC JF909119; XX DT 21-JUN-2012 (Rel. 113, Created) DT 05-DEC-2012 (Rel. 115, Last updated, Version 3) XX DE East African cassava mosaic virus-Kenya isolate DE Comoros:Grande-Comore:GC45AI1:2009 segment DNA-A, complete sequence. XX KW . XX OS East African cassava mosaic virus-Kenya OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RC Publication Status: Online-Only RP 1-2801 RX DOI; 10.1186/1471-2148-12-228. RX PUBMED; 23186303. RA De Bruyn A., Villemot J., Lefeuvre P., Villar E., Hoareau M., RA Harimalala M., Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B., RA Harkins G.W., Varsani A., Martin D.P., Lett J.M.; RT "East African cassava mosaic-like viruses from Africa to Indian ocean RT islands: molecular diversity, evolutionary history and geographical RT dissemination of a bipartite begomovirus"; RL BMC Evol. Biol. 12(1):228-228(2012). XX RN [2] RP 1-2801 RA Villemot J., Lefeuvre P., Villar E., Hoareau M., Harimalala M., RA Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B., Varsani A., Martin D.P., RA Lett J.-M.; RT ; RL Submitted (24-MAR-2011) to the INSDC. RL UMR PVBMT, CIRAD, 7, chemin de l'IRAT, Saint-Pierre, Reunion 97410, France XX DR MD5; 64bce680a7f4c8d7964cc17a60862336. XX FH Key Location/Qualifiers FH FT source 1..2801 FT /organism="East African cassava mosaic virus-Kenya" FT /segment="DNA-A" FT /host="Manihot esculenta (cassava)" FT /isolate="Comoros:Grande-Comore:GC45AI1:2009" FT /mol_type="genomic DNA" FT /country="Comoros:Grande-Comore" FT /lat_lon="11.76 S 43.25 E" FT /collection_date="2009" FT /db_xref="taxon:1229189" FT gene 174..530 FT /gene="AV2" FT CDS 174..530 FT /codon_start=1 FT /gene="AV2" FT /product="movement protein" FT /db_xref="GOA:I6LXZ1" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:I6LXZ1" FT /protein_id="AEG90048.1" FT /translation="MWDPLLNDFPETVHGFRSMLAVKYLLHLEQEYDRGTVGAEYIRDL FT IGVLRCKSYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQAHVS FT EAKDVQNVSKPRCP" FT gene 334..1107 FT /gene="AV1" FT CDS 334..1107 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:I6LXZ6" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:I6LXZ6" FT /protein_id="AEG90047.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKIWA FT NRPMYRKPKMYRMYRSPDVPKGCEGPCKVQSYEQRDDVKHTGMVRCVSDVTRGSGITHR FT VGKRFCVKSIYILGKIWMDENIKKQNHTNHVMFFLVRDRRPYGQSPQDFGQVFNMFDNE FT PTTATVKNDLRDRYQVLRKFYTTVVGGPSGMKEQALVKRFFRINNHVVYNHQEQAKYEN FT HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN" FT gene complement(1104..1508) FT /gene="AC3" FT CDS complement(1104..1508) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer" FT /db_xref="GOA:I6LXX0" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:I6LXX0" FT /protein_id="AEG90051.1" FT /translation="MDSRTGELITAPQATNGVFTWEITNPLYFEITNHDKRPGNMNHDI FT ITLQIRFNHNLRKALGIHKCFLNFKVWTTLRPQTGRFLKVFRYQVLKYLDMIGVISINT FT VLQAVDHVLYDVLLNTLQVTEQHAIKFNLY" FT gene complement(1249..1656) FT /gene="AC2" FT CDS complement(1249..1656) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /db_xref="GOA:I6LXZ3" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:I6LXZ3" FT /protein_id="AEG90050.1" FT /translation="MPPSSPSTSHCSLVPIKVQHRTAKTRAVRRRRVDLECGCSFYLHI FT DCINHGFSHRGTHHCASSNEWRFYLGNNKSPLFRNHQPRQAAREHEPRHHHTPDTVQPQ FT PPEGTGDSQVFSQLQGLDDLTASDWSFLKSI" FT gene complement(1565..2644) FT /gene="AC1" FT CDS complement(1565..2644) FT /codon_start=1 FT /gene="AC1" FT /product="replication associated protein" FT /db_xref="GOA:I6LXZ2" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:I6LXZ2" FT /protein_id="AEG90049.1" FT /translation="MPRAGRFQINARNYFITYPRCSLTKEEALSQLKALSYPTNIKFIR FT VCRELHQDGVPHLHVLIQFEGKFQCTNPRFFDLISTFRSTHFHPNIQGAKSSSDIKAYI FT EKGGEFLDDGIFQVDARSARGEGQHLAQVYADALNASSKTEALQIIKEKDPKSFFLQFH FT NISANADRIFQAPAQTYVSPFLSSSFTQVPEDIEVWVSENICSPAARPWRPISIVLEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKAFLDEERNQSLKAWALKNATFITLHEPL FT FSSAHQSPTPHSEDQGRQT" FT gene complement(2254..2487) FT /gene="AC4" FT CDS complement(2254..2487) FT /codon_start=1 FT /gene="AC4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:I6LXZ5" FT /protein_id="AEG90052.1" FT /translation="MGCLISMFSSSSKGSSNVPTQDSSISFPHSDPHISIRTFRELNHR FT PISKLILKREGNFLTMEFSRSMPEVQGGRASI" XX SQ Sequence 2801 BP; 732 A; 561 C; 715 G; 793 T; 0 other; accggatggc cgcgcccgaa aaagcaggtg gaccccacaa gatggccgcg cccgtgaaag 60 aaagtggtcc ccgcgcacat gtgttggtcg gccagtcata ttcacgcgtg aaagtctaga 120 tatttgttgt ttgtctttat agacttcgtc gcgaagtagt ggagcgcgtc aacatgtggg 180 atccattgtt gaacgatttc cccgaaaccg tccacggttt ccgttctatg cttgcggtta 240 aatacctgtt acatctggaa caggaatacg atcgcggtac tgtcggggcg gagtatatac 300 gtgatttaat aggggttcta cggtgtaaga gttatgtcga agcgaccagg agatataata 360 atctcaacac ccgtatccaa ggtgcggagg aggctgaact tcgacagccc atacacgaac 420 cgtgttgttg cccccactgt ccgcgtcacc agaagcaaaa tatgggccaa caggcccatg 480 tatcggaagc caaagatgta cagaatgtat cgaagcccag atgtccctaa gggctgtgaa 540 ggcccatgta aggttcagtc ctatgaacag agggatgatg tgaagcacac gggtatggtt 600 cgatgtgtca gtgatgttac tcgtgggtca ggtattaccc atagagtcgg gaagaggttt 660 tgtgttaagt ccatatatat attgggcaag atctggatgg atgagaatat caagaagcaa 720 aatcatacga accatgttat gttcttcctt gttcgagata gaaggcctta tggtcagagt 780 cctcaagatt ttggacaagt gttcaacatg ttcgataatg aacctactac ggcaactgtg 840 aagaatgatc ttagggaccg atatcaggtg ttacgtaaat tctatacgac tgttgttggt 900 ggaccctctg ggatgaagga acaagctctg gttaagaggt tttttaggat caataatcat 960 gtagtgtata atcatcagga acaggccaag tatgagaatc atactgagaa tgcgttgtta 1020 ttgtatatgg catgtacaca tgcctcgaat ccggtgtacg ctacgctgaa aatacgcatc 1080 tatttctatg atgcagtgac aaattaataa aggttgaatt ttattgcatg ttgctccgta 1140 acttggagcg tgtttagtaa tacatcgtac agaacatgat caacagcctg aagtacagtg 1200 ttaatggaaa taacgcctat catatctaaa tacttgagca cttgatatct aaatactttt 1260 aagaaacgac cagtctgagg ccgtaaggtc gtccagacct tgaagttgag aaaacacttg 1320 tgaatcccca gtgccttccg gaggttgtgg ttgaaccgta tctggagtgt gatgatgtcg 1380 tggttcatgt tccctggccg cttgtcgtgg ttggtgattt cgaaatagag gggatttgtt 1440 atttcccagg taaaaacgcc attcgttgct tgaggcgcag tgatgagttc ccctgtgcga 1500 gaatccatgg ttgatgcagt cgatatggag atagaacgag cagccgcatt cgaggtctac 1560 ccgcctacgt ctgacggccc tggtcttcgc tgtgcggtgt tggactttga tgggcactag 1620 agaacaatgg ctcgtggagg gtgatgaagg tggcattctt taaagcccag gctttaaggg 1680 actggttcct ttcctcgtcc agaaacgctt tatatgatga tgttggtcca ggattgcaga 1740 ggaagatagt gggaatgccg cctttaattt gaattggctt cccgtacttt gtattgcttt 1800 gccagtctct ttgggccccc atgaattctt tgaaatgctt tagatagtgc gggtctacgt 1860 cgtcaatgac gttgtaccat gcgtcgtttg aatatacctt tggagacaga tccaggtgtc 1920 cacatagata attatggggt cccagtgaac gagcccacat ggttttccct gttcggctat 1980 caccttcgag aacaatactg atcggtctcc atggccgcgc agcgggactg catatatttt 2040 ctgataccca tacttctatg tcttcgggga cttgtgtaaa tgatgatgat aagaacggac 2100 taacataagt ttgggccgga gcctggaaga ttctatccgc gttagcagat atgttatgga 2160 actgtaaaaa aaaggacttt ggatcttttt ctttaataat ctgaagagct tctgttttag 2220 aagaagcatt caacgcgtcg gcatatacct gagctaaatg ctggccctcc ccccttgcac 2280 ttctggcatc gacctggaaa attccatcgt caagaaattc ccctcccttt tcaatataag 2340 ctttgatatc ggacgatgat ttagctccct gaatgttcgg atggaaatgt gtggatctga 2400 atgtggaaat gagatcgaag aatcttgggt tggtacattg gaacttccct tcgaactgga 2460 tgagaacatg gagatgaggc accccatcct gatgtagttc tcggcaaacc ctgatgaatt 2520 tgatattcgt cgggtaagaa agggctttta attgggaaag tgcctcttcc tttgttaatg 2580 agcatcgggg ataggtaatg aaataatttc tggcatttat ttgaaaacga ccggctctcg 2640 gcatatttgc tgtcgttttg tatcggtgga cactcaaaac tccaggggaa cggtggaatg 2700 gtggacatta tataggatgt cccccaatgg cattcgtgta aataggtaga cttccatttc 2760 aaatttgaat gtcgaatatt ggcggccatc cgattaatat t 2801 //