ID JF909118; SV 1; circular; genomic DNA; STD; VRL; 2801 BP. XX AC JF909118; XX DT 21-JUN-2012 (Rel. 113, Created) DT 05-DEC-2012 (Rel. 115, Last updated, Version 3) XX DE East African cassava mosaic virus-Kenya isolate DE Comoros:Grande-Comore:GC43AO3:2009 segment DNA-A, complete sequence. XX KW . XX OS East African cassava mosaic virus-Kenya OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RC Publication Status: Online-Only RP 1-2801 RX DOI; 10.1186/1471-2148-12-228. RX PUBMED; 23186303. RA De Bruyn A., Villemot J., Lefeuvre P., Villar E., Hoareau M., RA Harimalala M., Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B., RA Harkins G.W., Varsani A., Martin D.P., Lett J.M.; RT "East African cassava mosaic-like viruses from Africa to Indian ocean RT islands: molecular diversity, evolutionary history and geographical RT dissemination of a bipartite begomovirus"; RL BMC Evol. Biol. 12(1):228-228(2012). XX RN [2] RP 1-2801 RA Villemot J., Lefeuvre P., Villar E., Hoareau M., Harimalala M., RA Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B., Varsani A., Martin D.P., RA Lett J.-M.; RT ; RL Submitted (24-MAR-2011) to the INSDC. RL UMR PVBMT, CIRAD, 7, chemin de l'IRAT, Saint-Pierre, Reunion 97410, France XX DR MD5; 67ea7997dd182776322c2af920e0405f. XX FH Key Location/Qualifiers FH FT source 1..2801 FT /organism="East African cassava mosaic virus-Kenya" FT /segment="DNA-A" FT /host="Manihot esculenta (cassava)" FT /isolate="Comoros:Grande-Comore:GC43AO3:2009" FT /mol_type="genomic DNA" FT /country="Comoros:Grande-Comore" FT /lat_lon="11.78 S 43.26 E" FT /collection_date="2009" FT /db_xref="taxon:1229189" FT gene 174..530 FT /gene="AV2" FT CDS 174..530 FT /codon_start=1 FT /gene="AV2" FT /product="movement protein" FT /db_xref="GOA:I6LXD1" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:I6LXD1" FT /protein_id="AEG90042.1" FT /translation="MWDPLLNDFPETVHGFRSMLAVKYLLHLEQQYDRGTVGAEYIRDL FT IGVLRCKSYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQAHVS FT EAQDVQNVSKPRCP" FT gene 334..1107 FT /gene="AV1" FT CDS 334..1107 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:I6LXY4" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:I6LXY4" FT /protein_id="AEG90041.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRAVAPTVRVTRSKIWA FT NRPMYRKPKMYRMYRSPDVPKGCEGPCKVQSYEQRDDVKHTGMVRCVSDVTRGSGITHR FT VGKRFCVKSIYILGKIWMDENIKKQNHTNHVMFFLVRDRRPYGPSPQDFGQVFNMFDNE FT PTTATVKNDLRDRYQVLRKFYATVVGGPSGMKEQALVKRFFRINNHVVYNHQEQAKYEN FT HMENALLLYMACTHASNPVYATLKIRIYFYDAVTN" FT gene complement(1104..1508) FT /gene="AC3" FT CDS complement(1104..1508) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer" FT /db_xref="GOA:I6LXY8" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:I6LXY8" FT /protein_id="AEG90045.1" FT /translation="MDSRTGELITAPQATNGVFTWEITNPLYFEITDHDKRPGNMNHDI FT ITLQIRFNHNLRKALGIHKCFLNFKVWTTLRPQTGRFLKVFRYQVLKYLDMIGVISINT FT VLQAVDHVLYDVLLNTLQVTEKHAIKFNLY" FT gene complement(1249..1656) FT /gene="AC2" FT CDS complement(1249..1656) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /db_xref="GOA:I6LXY7" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:I6LXY7" FT /protein_id="AEG90044.1" FT /translation="MPPSSPSTSHCSLVPIKVQHRTAKTRAVRRRRVDLECGCSFYLHI FT DCINHGFSHRGTHHCASSNEWRFYLGNNKSPLFRNHRPRQAAREHEPRHHHTPDTVQPQ FT PPEGIGDSQVFSQLQGLDDLTASDWSFLKSI" FT gene complement(1565..2644) FT /gene="AC1" FT CDS complement(1565..2644) FT /codon_start=1 FT /gene="AC1" FT /product="replication associated protein" FT /db_xref="GOA:I6LXY6" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:I6LXY6" FT /protein_id="AEG90043.1" FT /translation="MPRAGRFQINARNYFITYPRCSLTKEEALSQLKALSYPTNIKFIR FT VCRELHQDGVPHLHILIQFEGKFQCTNPRFFDLISTSRSTHFHPNIQGAKSSSDVKAYI FT EKGGEFLDDGLFQIDARSARGEGQHLAQVYADALNASSKTEALQIIKEKDPKSFFLQFH FT NISANADRIFQAPPQTYVSPFLSSSFTQVPEDIEVWVSENICSPAARPWRPISIVLEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLEEEKNQSLKAWALKNATFITLHEPL FT FSSAHQSPTPHSEDQGRQT" FT gene complement(2254..2487) FT /gene="AC4" FT CDS complement(2254..2487) FT /codon_start=1 FT /gene="AC4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:I6LXY9" FT /protein_id="AEG90046.1" FT /translation="MGCLISIFSSNSKGSSNVPTPDSSISFPHPDPHISIRTFRALNHR FT PMSKLILKREGNFLTMDFSKSMPEVQGGRASI" XX SQ Sequence 2801 BP; 729 A; 555 C; 715 G; 802 T; 0 other; accggatggc cgcgcccgaa aaagcagatg gaccccacag gatggccgcg cctgtgaaag 60 aaagtggtcc ccgcgcactt gttttggtcg gccagttata ttcacgcgtg aaagtctaga 120 tatttgttgt tggtctttat agacttcgtc gcgaagtagt ggagcgcgtc aacatgtggg 180 atccattgtt gaacgatttc cccgaaaccg ttcacggttt ccgttctatg cttgctgtta 240 aatacctgtt acatctggaa cagcaatacg atcgcggtac tgtcggggct gagtatatac 300 gggatctaat aggggttcta cggtgtaaga gttatgtcga agcgaccagg agatataata 360 atctcaacac ccgtatccaa ggtgcggagg aggctgaact tcgacagccc atacacgaac 420 cgtgctgttg cccccactgt ccgcgtcacc agaagcaaaa tatgggccaa caggcccatg 480 tatcggaagc ccaagatgta cagaatgtat cgaagcccag atgtccctaa gggctgtgaa 540 ggcccatgta aggtgcagtc ctatgaacag agggatgatg ttaagcacac gggtatggtt 600 cgatgtgtca gtgatgttac tcgtgggtca ggtattactc atagagtcgg gaagaggttt 660 tgtgttaagt ccatatatat attgggcaag atctggatgg atgagaatat caagaagcaa 720 aatcatacga accatgttat gttcttcctt gtgcgagata gaaggcctta tggtccgagt 780 cctcaagatt ttggacaagt gttcaacatg tttgataatg aacctactac tgcaactgtg 840 aaaaatgatc ttagggaccg gtatcaggtg ttacgtaaat tctatgcgac tgttgttggt 900 ggaccctctg ggatgaagga acaagctctg gttaagaggt tttttaggat caataatcat 960 gtagtgtata atcatcagga acaggccaag tatgagaatc atatggagaa tgcgttgtta 1020 ttgtatatgg catgtacaca tgcctcgaat cctgtgtacg ctacgctgaa aatacgcatc 1080 tatttctatg atgcagtgac aaattaataa aggttgaatt ttattgcatg tttctccgta 1140 acttggagcg tgttgagtaa tacatcgtac agaacatgat caacagcctg aagtacagtg 1200 ttaatggaaa taacgcctat catatctaaa tacttgagca cttgatatct aaatactttt 1260 aagaaacgac cagtctgagg ccgtaaggtc gtccagacct tgaagttgag aaaacacttg 1320 tgaatcccca atgccttccg gaggttgtgg ttgaaccgta tctggagtgt gatgatgtcg 1380 tggttcatgt tccctggccg cttgtcgtgg tcggtgattt cgaaatagag gggatttgtt 1440 atttcccagg taaaaacgcc attcgttgct tgaggcgcag tgatgagttc ccctgtgcga 1500 gaatccatgg ttgatgcagt cgatatggag atagaacgag cagccgcatt cgaggtctac 1560 ccgcctacgt ctgacggccc tggtcttcgc tgtgcggtgt tggactttga tgggcactag 1620 agaacaatgg ctcgtggagg gtgatgaagg tggcattctt taaagcccag gctttaaggg 1680 actggttctt ttcctcttcc agaaactctt tatatgatga tgttggtcca ggattgcaga 1740 ggaagatagt gggaatgccg cctttaattt gaattggctt cccgtacttt gtattgcttt 1800 gccagtctct ttgggccccc atgaattctt tgaaatgctt tagatagtgc gggtctacgt 1860 cgtcaatgac gttgtaccat gcgtcgtttg aatatacctt tggagacaga tccaagtgtc 1920 cacatagata attatggggt cccagtgaac gagcccacat ggtttttcct gttcggctat 1980 caccttcgag aacaatactg atcggtctcc atggccgcgc agcgggactg catatatttt 2040 cggataccca tacttctatg tcttcgggga cttgtgtaaa tgacgatgat aagaacggac 2100 taacataagt ttggggcgga gcctggaaga ttctatccgc gttagcagat atgttatgga 2160 actgtaaaaa aaaggacttt ggatcttttt ctttaataat ctgaagagct tctgttttag 2220 aagaagcatt caacgcgtct gcatatacct gagctaaatg ctggccctcc ccccttgcac 2280 ttcgggcatc gatttggaaa agtccatcgt caagaaattc ccctcccttt tcaatataag 2340 ctttgacatc ggacgatgat ttagcgccct gaatgttcgg atggaaatgt gtggatctgg 2400 atgtggaaat gagatcgaag aatctggggt tggtacattg gaacttccct tcgaattgga 2460 tgagaatatg gagatgaggc accccatcct gatgtagttc tcggcaaacc ctaatgaatt 2520 tgatattcgt cgggtaagaa agtgctttta attgggaaag tgcctcttcc tttgttaatg 2580 agcatcgggg ataggtaatg aaataatttc tggcatttat ttgaaaacga ccggctctcg 2640 gcatatttgc tgtcgttttg tatcggtgga cactcaaaac tccaggggaa cggtggaatg 2700 gtggacatta tataggatgt cccccaatgg cattcgtgta aataggtaga cttccatttc 2760 aattttgaat gtggaatatt ggcggccatc cgattaatat t 2801 //