ID JF909111; SV 1; circular; genomic DNA; STD; VRL; 2801 BP. XX AC JF909111; XX DT 21-JUN-2012 (Rel. 113, Created) DT 05-DEC-2012 (Rel. 115, Last updated, Version 3) XX DE East African cassava mosaic virus-Kenya isolate DE Comoros:Grande-Comore:GC32BY1:2010 segment DNA-A, complete sequence. XX KW . XX OS East African cassava mosaic virus-Kenya OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RC Publication Status: Online-Only RP 1-2801 RX DOI; 10.1186/1471-2148-12-228. RX PUBMED; 23186303. RA De Bruyn A., Villemot J., Lefeuvre P., Villar E., Hoareau M., RA Harimalala M., Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B., RA Harkins G.W., Varsani A., Martin D.P., Lett J.M.; RT "East African cassava mosaic-like viruses from Africa to Indian ocean RT islands: molecular diversity, evolutionary history and geographical RT dissemination of a bipartite begomovirus"; RL BMC Evol. Biol. 12(1):228-228(2012). XX RN [2] RP 1-2801 RA Villemot J., Lefeuvre P., Villar E., Hoareau M., Harimalala M., RA Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B., Varsani A., Martin D.P., RA Lett J.-M.; RT ; RL Submitted (24-MAR-2011) to the INSDC. RL UMR PVBMT, CIRAD, 7, chemin de l'IRAT, Saint-Pierre, Reunion 97410, France XX DR MD5; 1b6af5a2647a74d67845a57af5584663. XX FH Key Location/Qualifiers FH FT source 1..2801 FT /organism="East African cassava mosaic virus-Kenya" FT /segment="DNA-A" FT /host="Manihot esculenta (cassava)" FT /isolate="Comoros:Grande-Comore:GC32BY1:2010" FT /mol_type="genomic DNA" FT /country="Comoros:Grande-Comore" FT /lat_lon="11.48 S 43.31 E" FT /collection_date="2010" FT /db_xref="taxon:1229189" FT gene 174..530 FT /gene="AV2" FT CDS 174..530 FT /codon_start=1 FT /gene="AV2" FT /product="movement protein" FT /db_xref="GOA:I6LXD1" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:I6LXD1" FT /protein_id="AEG90000.1" FT /translation="MWDPLLNDFPETVHGFRSMLAVKYLLHLEQQYDRGTVGAEYIRDL FT IGVLRCKSYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQAHVS FT EAQDVQNVSKPRCP" FT gene 334..1107 FT /gene="AV1" FT CDS 334..1107 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:I6LX52" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:I6LX52" FT /protein_id="AEG89999.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKIWA FT NRPMYRKPKMYRMYRSPDVPKGCEGPCKVQSYEQRDDVKHTGMVRCVSDVTRGSGITHR FT VGKRFCVKSIYILGKIWMDENIKKQNHTNHVMFFLVRDRRPYGPSPQDFGQVFNMFDNE FT PTTATVKNDLRDRYQVLRKFYATVVGGPSGMKEQALVKRFFRINNHVVYNHQEQAKYEN FT HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN" FT gene complement(1104..1508) FT /gene="AC3" FT CDS complement(1104..1508) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer" FT /db_xref="GOA:I6LXU6" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:I6LXU6" FT /protein_id="AEG90003.1" FT /translation="MDSRTGELITAPQATNGVFTWEITNPLYFEITNHDKRPGNMHHDI FT ITLQIRFNHNLRKALGIHKCFLNFRVWTTLRPQTGRFLKVFRYQVLKYLDMIGVISINT FT VLQAVDHVLYDVLLNTLQVTEQHAIKFNLY" FT gene complement(1249..1656) FT /gene="AC2" FT CDS complement(1249..1656) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /db_xref="GOA:I6LXT9" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:I6LXT9" FT /protein_id="AEG90002.1" FT /translation="MPPSSPSTSHCSLVPIKVQHRTAKTRAVRRRRVDLECGCSFYLHI FT DCINHGFSHRGTHHCASSNEWRFYLGNNKSPLFRNHQPRQAAREHAPRHHHTPDTIQPQ FT PPEGIGDSQVFSQLQGLDDLTASDWSFLKSI" FT gene complement(1565..2644) FT /gene="AC1" FT CDS complement(1565..2644) FT /codon_start=1 FT /gene="AC1" FT /product="replication associated protein" FT /db_xref="GOA:I6LXU4" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:I6LXU4" FT /protein_id="AEG90001.1" FT /translation="MPRAGRFQINARNYFITYPRCSLTKEEALSQLKALSYPTNFIFIR FT VCRELHQDGVPHLHVLIQFEGKFQCTNPRFFDLISTSRSTHFHPNIQGAKSSSDVKAYI FT EKGGDFLDDGIFQVDARSARGEGQHLAQVYADALNASSKTEALQIIKEKDPKSFFLQFH FT NISANADRIFQAPPQTYISPFLSSSFTQVPEDIEVRVSENICTPAARPWRPISIVLECD FT SLTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVYPLYLKHFKDFLGAQRDC FT QIYIKYGKPIQIKGGIPSIFFCNPGSTSTYKEFLEEEKNLSLKAWALKNATFITLHEPL FT FSSAHQSPTPHSEDQGRQT" FT gene complement(2254..2487) FT /gene="AC4" FT CDS complement(2254..2487) FT /codon_start=1 FT /gene="AC4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:I6LXU1" FT /protein_id="AEG90004.1" FT /translation="MGCLISMFSSSSKGSSNVPTQDSSISFPHPDPHISIRTFRALNHR FT PMSKLILKREGTFLTMEFSRSMPEVQGGRASI" XX SQ Sequence 2801 BP; 742 A; 553 C; 713 G; 793 T; 0 other; accggatggc cgcgcccgaa aaagcaggtg gaccccacag tatggccgcg cccgttaaag 60 aaagtggtcc ccgcgcacgt gttttggtcg gccagtcata ttcacgcgtg aaagtctaga 120 tatttgttgt tggtctttat agacttcgtc gcgaagtagt ggatcgcgtc aacatgtggg 180 atccattgtt gaacgatttc cccgaaaccg ttcacggttt ccgttctatg cttgctgtta 240 aatacctgtt acatctggaa cagcaatacg atcgcggtac tgtcggggct gagtatatac 300 gggatctaat aggggtacta cggtgtaaga gttatgtcga agcgaccagg agatataata 360 atctcaacac ccgtatccaa ggtgcggagg aggctgaact tcgacagccc atacacgaac 420 cgtgttgttg cccccactgt ccgcgtcacc agaagcaaaa tatgggccaa caggcccatg 480 tatcggaagc ccaagatgta cagaatgtat cgaagcccag atgtccctaa gggctgtgaa 540 ggcccatgta aggttcagtc ctacgaacag agggatgatg ttaagcacac gggtatggtt 600 cgatgtgtca gtgatgttac gcgtgggtca ggtattactc atagagtcgg gaagaggttt 660 tgtgttaagt ccatatatat attgggcaag atctggatgg atgagaatat caagaagcaa 720 aatcatacga accatgtgat gttcttcctt gttcgagata gaaggcctta tggtccgagt 780 cctcaagatt ttggacaagt gttcaacatg tttgataatg aacctactac tgcaactgtg 840 aaaaatgatc ttagggaccg gtatcaggtg ttacgtaaat tctatgcgac tgttgttggt 900 ggaccctctg ggatgaagga acaagctctg gttaagaggt tttttaggat caataatcat 960 gtagtgtata atcatcagga acaggccaag tatgagaatc atactgagaa tgcgttgtta 1020 ttgtatatgg catgtacaca tgcctcgaat cctgtgtacg ctacgctgaa aatacgcatc 1080 tatttctatg atgcagtgac aaattaataa aggttgaatt ttattgcatg ttgctccgta 1140 acttggagcg tgtttagtaa tacatcgtac agaacatgat caacagcctg aagtacagtg 1200 ttaatggaaa taacgcctat catatctaaa tacttgagca cttgatatct aaatactttt 1260 aagaaacgac cagtctgagg ccgtaaggtc gtccagaccc tgaagttgag aaaacacttg 1320 tgaatcccca atgccttccg gaggttgtgg ttgaatcgta tctggagtgt gatgatgtcg 1380 tggtgcatgt tccctggccg cttgtcgtgg ttggtgattt cgaaatagag gggatttgtt 1440 atttcccagg taaaaacgcc attcgttgct tgaggcgcag tgatgagttc ccctgtgcga 1500 gaatccatgg ttgatgcagt cgatatggag atagaacgag cagccgcatt cgaggtctac 1560 ccgcctacgt ctgacggccc tggtcttcgc tgtgcggtgt tggactttga tgggcactag 1620 agaacaatgg ctcgtggagg gtgatgaagg tggcattctt taaagcccag gctttaaggg 1680 acaggttctt ttcctcttcc agaaactctt tatatgttga tgttgatcca ggattgcaga 1740 agaagataga gggaatgccg cctttaattt gaattggctt cccgtacttt atatagattt 1800 gacagtctct ttgggccccc aggaaatctt tgaaatgctt tagatagagc gggtatacgt 1860 cgtcaatgac gttgtaccat gcgtcgtttg aatatacttt tggagacaga tccaggtgtc 1920 cacatagata attatggggt cccagtgaac gagcccacat ggtttttcct gttaggctat 1980 cacattcgag aacaatactg atcggtctcc atggccgcgc agcgggagtg catatatttt 2040 ctgatacccg tacttctatg tcttcgggga cttgtgtaaa tgatgatgat aagaacggac 2100 taatataagt ttggggcgga gcctggaaga ttctatccgc gttagcagat atgttatgga 2160 actgtaaaaa aaaggacttg ggatcttttt ctttaataat ctgaagagct tctgttttag 2220 aagaagcatt caacgcgtct gcatatacct gagctaaatg ctggccctcc ccccttgcac 2280 ttctggcatc gacctggaaa attccatcgt caagaaagtc ccctcccttt tcaatataag 2340 ctttgacatc ggacgatgat ttagcgccct gaatgttcgg atggaaatgt gtggatctgg 2400 atgtggaaat gagatcgaag aatcttgggt tggtacattg gaacttccct tcgaactgga 2460 tgagaacatg gagatgaggc accccatcct gatgtagttc tcggcaaacc ctaatgaata 2520 tgaaattcgt cgggtaagaa agggctttta attgggaaag tgcctcttcc tttgttaatg 2580 agcatcgggg ataggtaatg aaataatttc tggcatttat ttgaaaacga ccggctctcg 2640 gcatatttgc tgtcgttttg tatcggtgga cactcaaaac tccaggggaa cggtggaatg 2700 gtggacatta tataggatgt cccccaatgg cattcgtgta aataggtaga cttccatttc 2760 aaatttgaat gtcgaatatt ggcggccatc cgattaatat t 2801 //