Dbfetch
ID JF909095; SV 1; circular; genomic DNA; STD; VRL; 2799 BP. XX AC JF909095; XX DT 21-JUN-2012 (Rel. 113, Created) DT 05-DEC-2012 (Rel. 115, Last updated, Version 3) XX DE East African cassava mosaic Kenya virus isolate DE Comoros:Grande-Comore:GC16B00:2004 segment DNA-A, complete sequence. XX KW . XX OS East African cassava mosaic Kenya virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RC Publication Status: Online-Only RP 1-2799 RX DOI; 10.1186/1471-2148-12-228. RX PUBMED; 23186303. RA De Bruyn A., Villemot J., Lefeuvre P., Villar E., Hoareau M., RA Harimalala M., Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B., RA Harkins G.W., Varsani A., Martin D.P., Lett J.M.; RT "East African cassava mosaic-like viruses from Africa to Indian ocean RT islands: molecular diversity, evolutionary history and geographical RT dissemination of a bipartite begomovirus"; RL BMC Evol. Biol. 12(1):228-228(2012). XX RN [2] RP 1-2799 RA Villemot J., Lefeuvre P., Villar E., Hoareau M., Harimalala M., RA Abdoul-Karime A.L., Abdou-Chakour C., Reynaud B., Varsani A., Martin D.P., RA Lett J.-M.; RT ; RL Submitted (24-MAR-2011) to the INSDC. RL UMR PVBMT, CIRAD, 7, chemin de l'IRAT, Saint-Pierre, Reunion 97410, France XX DR MD5; c606c9b11ac6e3643fab05c1858ea010. XX FH Key Location/Qualifiers FH FT source 1..2799 FT /organism="East African cassava mosaic Kenya virus" FT /segment="DNA-A" FT /host="Manihot esculenta (cassava)" FT /isolate="Comoros:Grande-Comore:GC16B00:2004" FT /mol_type="genomic DNA" FT /country="Comoros:Grande-Comore" FT /lat_lon="11.72 S 43.27 E" FT /collection_date="2004" FT /db_xref="taxon:393599" FT gene 174..539 FT /gene="AV2" FT CDS 174..539 FT /codon_start=1 FT /gene="AV2" FT /product="movement protein" FT /db_xref="GOA:I6LXJ7" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:I6LXJ7" FT /protein_id="AEG89904.1" FT /translation="MWDPLLNEFPETVHGFRSMLAVKYLLHLEQEYDRGTVGAEYIRDL FT IGVLRCKSYVEATRRYTNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQAHVS FT EAQDVQNVSKPRCSEGL" FT gene 334..996 FT /gene="AV1" FT CDS 334..996 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:I6LXJ6" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:I6LXJ6" FT /protein_id="AEG89903.1" FT /translation="MSKRPGDILISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKIWA FT NRPMYRKPKMYRMYRSPDVPKGCEGPCKVQSYEQRDDVKHTGMVRCVSDVTRGSGITHR FT VGKRFCVKSIYILGKIWMDENIKKQNHTNHVMFFLVRDRRPYGQSPQDFGQVFNMFDNE FT PTTATVKNDLRDRYQVLRKFYTTVVGGPSGMKEQSLVKRFFRINNHVVYNHQEQAKV" FT gene complement(1105..1509) FT /gene="AC3" FT CDS complement(1105..1509) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer" FT /db_xref="GOA:I6LXK0" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:I6LXK0" FT /protein_id="AEG89907.1" FT /translation="MDSRTGELITAPQAKNGVFTWEITNPLYFDITNHDRRPGNMNHDL FT ITFQIRFNHNIRKALGIHKCFLNFKVWTTLRPPTGLFLKVFRYQVLKYLDMIGVISINT FT VIQAVDHVLYNVLLNTLQVTEHHEIKFNLY" FT gene complement(1250..1657) FT /gene="AC2" FT CDS complement(1250..1657) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /db_xref="GOA:I6LXJ9" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:I6LXJ9" FT /protein_id="AEG89906.1" FT /translation="MPPSSPSTSHCSQVPIKVQHRTAKTRAVRRRRVDLECGCSFYLHI FT DCINHGFSHRGTHHCASSKEWRFYLGNNKSPLFRHHQPRQETREHEPRPHHIPDTVQPQ FT HPEGIGDSQMFSQLQGLDDLTASDWSFLKSI" FT gene complement(1581..2645) FT /gene="AC1" FT CDS complement(1581..2645) FT /codon_start=1 FT /gene="AC1" FT /product="replication associated protein" FT /db_xref="GOA:I6LXJ8" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:I6LXJ8" FT /protein_id="AEG89905.1" FT /translation="MPRAGRFSIKAKNYFLTYPKCSLSKEEALDQLRQLQTPTNKLFIK FT ICRELHENGEPHLHALIQFEGKYNCTNQRFFDLISPSRSAHFHPNIQGAKSSSDVKSYL FT DKDGDTIQWGEFQIDGRSARGGQQSANDAYAKALNSANKSEALNVIRELAPKDFVLQFH FT NLNSNLERIFQEPLTPYISPFLSSSFTNVPEELEAWVSENVMGSAARPWRPSSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLDEEKNKSLKAWAIKNATFITLHEPL FT FSSAHQSPTPHSED" FT gene complement(2198..2494) FT /gene="AC4" FT CDS complement(2198..2494) FT /codon_start=1 FT /gene="AC4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:I6LXK1" FT /protein_id="AEG89908.1" FT /translation="MKMGNLICMPSFSSKASTIVPTNDSSTSYPLPGQPISTQIFRELN FT QAPTSSPIWIRTGTPSNGASFRSTDDLLEADNNPPMTLTPRLLTQQISQRLLM" XX SQ Sequence 2799 BP; 724 A; 560 C; 723 G; 792 T; 0 other; accggatggc cgcgcccgaa aaaagcaggt ggccccacaa gatggccgcg cccgttaaag 60 aaagtggtcc ccgcgcactt gtgttggtcg gccagtcata ttcacgcgtg aaagtctaga 120 tatttgttgt ttgtctttat agacttcgtc gcgaagtagt ggagcgcgtc aacatgtggg 180 atccattgtt gaacgagttt cccgaaaccg ttcacggttt ccgttctatg cttgctgtta 240 aatacctgtt acatctggaa caggaatacg atcgcggtac tgtcggggcg gagtatatac 300 gtgatttaat aggggttcta cggtgtaaga gttatgtcga agcgaccagg agatatacta 360 atctcaacac ccgtatccaa ggtgcggagg aggctgaact tcgacagccc atacacgaac 420 cgtgttgttg cccccactgt ccgcgtcacc agaagcaaaa tatgggccaa caggcccatg 480 tatcggaagc ccaagatgta cagaatgtat cgaagcccag atgttccgaa gggctgtgaa 540 ggcccatgta aggttcagtc ctatgaacag agggatgatg tgaagcacac tggtatggtc 600 cgatgtgtta gtgatgttac tcgtggatca ggcattaccc atagagtcgg gaagaggttt 660 tgtgtgaagt ccatatatat attgggcaag atttggatgg atgagaatat caagaagcaa 720 aatcatacga accatgttat gttcttcctt gttcgagata gaaggcctta tggtcagagt 780 cctcaagatt ttggacaagt gttcaacatg tttgataatg aacctactac ggcaactgtg 840 aagaatgatc ttagggaccg atatcaggtg ttacgtaaat tttatacgac tgttgttggt 900 ggaccctctg ggatgaagga acaatctctg gttaagaggt tttttaggat caataatcat 960 gtagtgtata atcatcagga acaggccaaa gtatgagaac catactgaga atgcgttgtt 1020 attgtatatg gcatgtacac atgcctcgaa tcctgtgtac gctacgctga aaatacgcat 1080 ctatttctat gatgcagtga caaattaata aaggttgaat tttatttcat ggtgctccgt 1140 aacttggagt gtgtttagta atacattgta cagaacatga tcaacagctt gaattacagt 1200 gttaatggaa ataacgccta tcatatctaa atacttgagc acttgatatc taaatacttt 1260 taagaaaaga ccagtcggag gccgtaaggt cgtccagacc ttgaagttga gaaaacattt 1320 gtgaatcccc aatgccttcc ggatgttgtg gttgaaccgt atctggaatg tgatgaggtc 1380 gtggttcatg ttccctggtc tcctgtcgtg gttggtgatg tcgaaataga ggggatttgt 1440 tatttcccag gtaaaaacgc cattctttgc ttgaggcgca gtgatgagtt cccctgtgcg 1500 agaatccatg attgatgcag tcgatatgga gatagaacga gcagccgcat tcgaggtcta 1560 cccgcctacg tctgacggcc ctagtcttcg ctgtgcggtg ttggactttg atgggcactt 1620 gagaacaatg gctcgtggag ggtgatgaag gtggcattct ttatagccca ggctttaagg 1680 gacttgttct tttcctcgtc cagaaactct ttatatgatg atgttggtcc tggattgcat 1740 aggaagatag tgggaatgcc gcctttaatt tgaattggct tcccgtactt tgtattgctt 1800 tgccagtccc gttgggcccc catgaattct ttgaaatgct tgaggtagtg ggggtcgacg 1860 tcatcaatga cgttgtacca tgcgtcgtta ctgtatacct ttggactgag atccaggtgt 1920 ccacacaagt agttatgtgg tcccaaagag cgagcccaca ttgtcttccc tgtcctacta 1980 tctccctcga tgacgatact actcggtctc catggccgcg cagcggaacc catcacgttc 2040 tcggaaaccc aggcttcaag ttcctcagga acgttagtga aagaagaaga aagaaaggga 2100 gaaatataag gagtgagagg ctcttgaaaa atcctctcta aattgctatt taaattatga 2160 aactgtaaaa caaaatcttt tggggctagt tcccgtatta cattaagagc ctctgactta 2220 tttgctgagt taagagcctt ggcgtaagcg tcattggcgg attgttgtcc gcctcgagca 2280 gatcgtccgt cgatctgaaa ctcgccccat tggatggtgt ccccgtcctt atccagatag 2340 gacttgacgt cggagcttga tttagctccc tgaatatttg ggtggaaatg ggctgaccgg 2400 gaaggggata tgaggtcgaa gaatcgttgg ttggtacaat tgtacttgcc ttcgaactga 2460 atgagggcat gcagatgagg ttccccattt tcatggagct ctctgcagat cttgatgaac 2520 aatttatttg ttggggtttg gagctgtcgg agctgatcca aggcctcttc tttcgataga 2580 gaacatttgg gatatgttag gaaatagttt ttggctttga tgctaaaacg accagccctt 2640 ggcatttgcg ctgtcgtata gcaatcgggg ggcactcaaa atctgtagca atcgggggaa 2700 tgggggggca atttatatga tgccccccaa atggcattta tgtaatatcc tcatgaaatt 2760 tgaattgcaa acgtggaaag cggccatccg tataatatt 2799 //